genome.fa.s12.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  134  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45186483--45186591	7	15.6	7	72	11	62	50	33	0	15	1.51
45186483--45186596	21	5.4	21	74	8	79	50	32	0	16	1.52
45190935--45190962	14	2.0	14	100	0	56	57	0	0	42	0.99
45191252--45191354	50	2.1	50	94	0	179	27	10	28	33	1.90
45192819--45192959	49	2.9	50	84	3	187	26	19	29	24	1.98
45193022--45193180	42	3.6	42	74	14	151	30	19	24	25	1.98
45192930--45193170	90	2.6	90	78	9	218	30	19	22	27	1.98
45195827--45195859	11	3.0	11	86	13	50	42	0	0	57	0.98
45199696--45199722	11	2.5	11	100	0	54	44	0	0	55	0.99
45201434--45201593	24	6.5	24	72	9	117	25	13	29	31	1.94
45201440--45201579	74	1.9	75	81	10	171	25	12	30	32	1.92
45213611--45213669	30	2.0	30	89	0	91	20	13	6	59	1.57
45213960--45213986	14	1.9	14	100	0	54	29	3	0	66	1.09
45213930--45213985	27	2.0	29	82	10	71	33	5	1	58	1.31
45221840--45221881	21	2.0	21	100	0	84	33	0	9	57	1.31
45225309--45225374	21	3.0	21	77	4	60	68	1	7	22	1.24
45225874--45225913	21	1.9	21	84	0	53	45	0	17	37	1.49
45226408--45226471	24	2.6	25	77	7	67	17	23	20	39	1.92
45232306--45232392	43	2.0	43	100	0	174	37	18	6	36	1.78
45236717--45236765	21	2.4	21	86	3	64	38	2	22	36	1.66
45237419--45237484	25	2.6	25	95	0	114	25	25	15	33	1.95
45240275--45240360	40	2.2	39	91	2	136	26	17	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45242930--45243079	67	2.2	67	81	8	171	33	17	28	21	1.96
45242954--45243125	67	2.7	64	76	7	177	29	17	29	23	1.97
45254581--45254710	50	2.6	50	83	4	154	34	26	14	23	1.94
45255066--45255112	19	2.3	20	82	10	60	48	14	0	36	1.44
45264934--45264958	13	1.9	13	100	0	50	16	40	28	16	1.89
45264999--45265114	55	2.1	55	82	6	137	14	29	30	25	1.95
45266093--45266125	13	2.5	13	90	0	57	24	48	18	9	1.76
45279495--45279742	40	6.2	40	84	3	304	25	22	26	25	2.00
45370652--45370773	39	3.1	40	88	3	185	25	27	23	22	2.00
45378769--45378930	40	4.1	40	84	6	204	27	28	21	22	1.99
45386577--45386662	43	2.0	43	100	0	172	44	16	6	32	1.74
45387929--45387986	30	1.9	30	89	0	89	29	24	8	37	1.85
45419491--45419538	25	1.9	25	86	0	69	33	25	16	25	1.96
45419575--45419637	20	3.2	20	93	0	108	38	12	17	31	1.87
45419691--45419857	24	7.0	24	86	8	234	29	20	21	28	1.98
45419692--45419836	23	6.1	23	89	8	220	29	20	20	29	1.97
45419692--45419836	47	3.1	47	92	3	238	29	20	20	29	1.97
45420050--45420113	31	2.1	31	90	0	101	35	15	23	25	1.94
45427615--45427662	25	1.9	25	91	0	78	35	25	14	25	1.94
45427701--45427757	9	5.9	9	73	15	51	35	8	21	35	1.84
45427699--45427761	20	3.2	20	95	0	117	36	12	19	31	1.89
45427815--45427939	24	5.2	24	91	6	209	29	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45427815--45427939	47	2.6	48	92	6	209	29	20	22	28	1.98
45429361--45429659	40	7.5	40	88	4	401	25	28	22	23	1.99
45431537--45431600	31	2.1	31	90	0	101	35	15	23	25	1.94
45437382--45437420	20	2.0	20	94	0	69	51	10	10	28	1.68
45443314--45443414	43	2.3	43	88	6	143	22	28	30	17	1.97
45453977--45454008	13	2.4	14	94	5	57	43	9	18	28	1.81
45457992--45458799	406	2.0	406	98	0	1544	30	17	16	35	1.92
45459094--45459134	15	2.8	15	96	3	75	14	24	7	53	1.66
45461757--45461805	21	2.2	23	89	7	75	57	0	2	40	1.10
45461774--45461810	14	2.6	15	83	12	51	54	0	0	45	1.00
45464671--45464716	5	9.8	5	84	11	62	41	15	2	41	1.59
45468168--45468229	32	1.9	32	90	0	97	37	20	9	32	1.86
45475745--45475917	93	1.8	93	86	8	253	23	30	18	28	1.98
45479282--45479431	72	2.0	74	92	7	252	21	8	29	40	1.83
45479296--45479448	72	2.1	73	84	10	197	23	9	28	39	1.85
45479417--45479522	53	2.0	53	98	0	203	30	17	22	29	1.97
45481111--45481152	1	42.0	1	95	0	75	97	2	0	0	0.16
45481879--45482005	1	127.0	1	95	0	227	97	2	0	0	0.16
45484951--45485030	25	3.2	25	77	21	87	25	38	3	32	1.73
45489068--45489144	24	3.2	24	98	0	145	32	3	42	20	1.70
45490101--45490130	8	3.8	8	90	0	51	50	23	23	3	1.64
45490549--45490651	27	3.8	27	91	5	147	19	25	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45496912--45497012	24	4.2	24	93	0	166	33	3	41	20	1.71
45498425--45498553	27	4.8	26	88	4	150	18	24	21	34	1.96
45504708--45504802	43	2.2	43	83	3	111	33	25	15	25	1.95
45505494--45505592	33	3.0	33	98	0	189	56	12	16	15	1.67
45508503--45508530	13	2.2	13	100	0	56	28	0	14	57	1.38
45509936--45510153	40	5.5	40	86	5	309	27	20	24	27	1.99
45509932--45510138	80	2.6	80	96	0	378	27	20	24	28	1.99
45525119--45525400	50	5.6	50	75	7	232	30	25	17	25	1.97
45525120--45525400	151	1.9	150	86	3	402	30	25	17	25	1.97
45527196--45527245	23	2.2	23	82	10	59	34	10	0	56	1.33
45539364--45539801	44	9.9	44	73	9	327	28	15	26	28	1.96
45539301--45539801	176	2.8	175	83	3	580	29	15	26	28	1.96
45561193--45561277	40	2.2	40	91	2	118	30	20	24	24	1.98
45561204--45561407	40	5.2	39	86	2	228	27	27	23	20	1.99
45561204--45561407	79	2.6	79	88	1	239	27	27	23	20	1.99
45561244--45561438	40	4.9	40	88	3	270	27	28	23	21	1.99
45561172--45561438	119	2.2	118	84	2	320	28	26	23	22	1.99
45561244--45561438	79	2.5	79	90	2	293	27	28	23	21	1.99
45567972--45568223	40	6.3	40	79	5	278	27	28	19	24	1.98
45567972--45568222	80	3.2	80	93	0	396	27	28	19	24	1.98
45576096--45576247	40	3.8	40	85	3	225	25	28	20	25	1.99
45576076--45576246	80	2.2	80	90	1	263	27	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45592739--45592827	33	2.6	33	77	5	81	29	24	17	28	1.98
45594799--45594910	27	4.2	26	83	7	134	37	22	24	16	1.93
45602676--45602782	27	3.9	28	83	9	132	38	22	23	15	1.93
45611949--45612059	27	4.2	26	82	5	123	39	20	23	16	1.92
45612470--45612501	8	4.0	8	91	0	55	3	25	25	46	1.67
45613471--45613536	24	2.8	24	97	0	123	21	39	6	33	1.78
45617133--45617308	46	3.8	46	77	12	207	22	20	27	30	1.98
45617130--45617300	93	1.8	93	93	0	297	22	21	27	29	1.99
45622625--45622845	40	5.6	40	81	9	240	24	22	26	26	2.00
45626056--45626167	27	4.2	26	86	5	143	38	21	24	16	1.93
45627575--45627676	24	4.2	24	96	0	177	20	41	3	34	1.71
45636111--45636281	46	3.7	46	78	11	197	22	21	28	28	1.99
45639567--45639713	40	3.7	40	83	5	120	25	27	21	25	2.00
45639613--45639793	80	2.3	80	83	9	219	27	27	20	23	1.99
45639610--45639793	40	4.6	40	81	7	196	28	27	20	23	1.99
45647433--45647615	80	2.3	81	83	10	225	27	25	21	25	1.99
45647430--45647560	40	3.3	40	84	2	174	29	25	19	25	1.99
45651033--45651108	40	1.9	40	88	0	116	22	17	30	30	1.96
45653661--45653761	37	2.7	37	87	3	150	29	19	26	23	1.98
45653794--45654075	48	5.9	48	88	1	406	32	15	22	29	1.95
45670067--45670097	14	2.2	14	94	0	53	9	29	3	58	1.46
45673990--45674016	12	2.2	12	100	0	54	33	18	7	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45684160--45684207	17	2.8	17	75	15	53	35	10	8	45	1.68
45684264--45684321	29	2.0	29	100	0	116	44	0	27	27	1.54
45696832--45696944	38	3.0	38	89	0	163	15	20	23	40	1.90
45696859--45696985	38	3.3	38	82	4	121	18	17	22	42	1.89
45707072--45707296	40	5.7	40	86	5	296	24	22	28	25	2.00
45707072--45707329	119	2.2	119	81	6	283	25	21	27	24	1.99
45715267--45715451	40	4.7	40	82	7	209	24	22	27	25	2.00
45715320--45715484	79	2.1	79	84	6	210	25	21	27	25	1.99
45718547--45718584	20	1.9	20	89	10	60	42	13	7	36	1.73
45724574--45724618	20	2.2	20	100	0	90	33	15	4	46	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311