genome.fa.s12.2.7.7.80.10.50.1000.278.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  278  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91242861--91242903	21	2.0	21	100	0	86	48	9	9	32	1.67
91250494--91250520	13	2.1	13	100	0	54	44	7	7	40	1.60
91253364--91253439	38	2.0	38	100	0	152	39	21	10	28	1.86
91253632--91253751	24	4.9	23	77	7	89	34	23	26	15	1.95
91253658--91253785	24	5.2	24	77	6	105	37	24	25	13	1.91
91253633--91253751	48	2.4	48	84	5	141	34	23	26	15	1.94
91253730--91253811	26	3.2	25	75	5	67	39	21	21	17	1.93
91256233--91256354	50	2.4	51	87	2	174	35	14	22	27	1.94
91256339--91256485	31	4.7	31	88	3	215	25	18	27	27	1.98
91256562--91256723	49	3.5	48	83	9	189	29	14	26	30	1.95
91256604--91256767	42	3.7	43	82	9	163	29	13	26	29	1.94
91259345--91259396	25	2.1	25	81	0	59	67	1	3	26	1.18
91263807--91263882	40	1.9	40	86	0	107	34	34	13	18	1.89
91265950--91265984	6	5.5	6	90	10	52	82	2	0	14	0.77
91265950--91265985	13	2.8	13	84	16	56	83	2	0	13	0.76
91266004--91266072	9	7.6	9	78	3	66	27	10	20	42	1.84
91271559--91271627	36	1.9	36	96	0	129	43	4	11	40	1.61
91273402--91273466	21	3.2	21	73	20	75	10	26	23	40	1.87
91273384--91273484	39	2.6	39	91	0	166	12	27	23	35	1.92
91275519--91275689	48	3.5	48	81	9	170	28	18	26	27	1.98
91277764--91277834	31	2.3	31	92	0	115	29	19	16	33	1.94
91277858--91277949	42	2.2	42	88	0	130	34	21	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91278094--91278216	26	4.8	26	91	1	178	29	23	21	26	1.99
91278094--91278216	52	2.4	51	94	2	212	29	23	21	26	1.99
91279024--91279102	27	2.9	27	90	3	124	18	26	22	31	1.97
91279141--91279493	27	13.0	27	76	7	214	30	9	20	39	1.84
91279254--91279486	81	2.9	80	88	1	322	29	8	21	41	1.81
91279141--91279497	54	6.6	54	74	7	256	30	9	20	39	1.84
91279452--91279607	27	5.8	27	85	1	143	39	7	20	33	1.80
91279452--91279607	53	2.9	53	81	0	159	39	7	20	33	1.80
91281367--91281947	131	4.4	130	80	6	546	28	19	17	34	1.94
91288981--91289063	41	2.0	41	97	0	157	31	16	8	43	1.78
91293514--91293871	44	8.1	44	85	0	448	29	14	30	25	1.95
91293514--91293871	132	2.7	132	88	0	520	29	14	30	25	1.95
91296893--91297623	131	5.6	129	85	4	914	29	17	17	35	1.93
91296906--91297515	262	2.3	263	91	0	1006	29	17	17	35	1.93
91303011--91303056	23	2.0	23	83	4	58	47	8	4	39	1.54
91303018--91303062	23	2.0	23	81	0	54	42	11	6	40	1.67
91308682--91308966	48	6.0	47	80	1	255	27	17	29	25	1.98
91308695--91308970	96	2.9	96	81	2	322	28	17	28	25	1.98
91308682--91308966	144	2.0	144	80	4	324	27	17	29	25	1.98
91309527--91309585	28	2.1	28	100	0	118	38	23	15	22	1.92
91310002--91310030	15	1.9	15	100	0	58	55	10	0	34	1.34
91310085--91310148	32	2.0	32	100	0	128	56	3	0	40	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91311376--91311427	18	2.9	18	72	11	52	59	5	5	28	1.44
91312545--91312583	20	2.0	20	94	0	69	12	0	28	58	1.34
91312578--91312622	22	2.1	21	87	4	63	26	0	33	40	1.57
91318703--91318755	15	3.8	15	72	23	53	77	0	7	15	0.98
91318702--91318770	26	2.7	26	78	17	81	75	0	7	17	1.02
91319050--91319097	23	2.1	23	96	0	87	37	0	25	37	1.56
91322546--91322583	20	2.0	20	89	5	60	60	7	2	28	1.38
91335924--91335952	14	2.0	15	93	6	51	37	0	0	62	0.96
91335950--91336010	24	2.4	23	82	15	68	32	0	6	60	1.22
91335926--91335991	35	1.9	34	87	9	98	33	0	3	63	1.10
91336937--91336985	20	2.3	21	83	13	57	63	0	0	36	0.95
91341637--91341888	71	3.5	71	86	2	301	30	23	12	32	1.92
91343825--91343861	19	1.9	19	100	0	74	27	21	10	40	1.86
91345224--91345278	23	2.3	24	75	9	60	30	0	0	69	0.89
91346995--91347125	35	3.6	35	77	9	136	33	25	10	30	1.90
91354439--91354569	35	3.6	35	75	9	127	34	25	10	29	1.90
91357097--91357129	9	3.8	9	88	8	50	33	0	0	66	0.92
91359949--91360488	271	2.0	270	83	1	679	30	9	16	44	1.79
91361522--91362387	433	2.0	433	99	0	1723	38	7	18	36	1.78
91363784--91363821	12	3.2	12	85	7	51	78	18	0	2	0.86
91366593--91367083	261	1.9	263	86	2	711	26	18	19	36	1.95
91366589--91367085	130	3.8	131	87	2	676	25	18	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91381736--91382278	133	4.1	133	88	2	750	28	19	23	27	1.98
91382625--91382650	12	2.2	12	100	0	52	76	23	0	0	0.78
91385411--91385933	131	4.0	130	84	2	634	26	17	19	36	1.94
91385441--91385933	261	1.9	263	84	1	677	26	18	19	35	1.95
91385411--91385933	130	4.0	131	84	2	647	26	17	19	36	1.94
91391906--91391954	18	2.7	18	93	3	80	4	2	26	67	1.19
91392801--91392862	30	2.1	30	90	6	99	43	29	8	19	1.79
91392959--91392993	14	2.6	14	90	4	54	51	5	14	28	1.65
91393013--91393296	78	3.8	76	82	7	296	35	17	16	30	1.92
91393241--91393729	84	5.7	86	75	12	405	35	17	19	27	1.94
91393206--91393560	84	4.1	88	83	7	440	38	15	17	28	1.91
91393540--91393713	94	1.9	94	82	2	224	31	20	21	26	1.98
91393795--91394103	77	4.0	77	88	4	444	29	21	20	29	1.98
91393130--91394701	323	4.7	318	81	11	1578	33	20	19	27	1.96
91394128--91394456	74	4.1	76	70	19	224	31	21	19	27	1.98
91393130--91394701	166	9.5	164	84	8	1816	33	20	19	27	1.96
91394204--91394701	88	5.7	88	75	13	289	33	21	18	27	1.96
91392972--91394689	489	3.5	486	84	9	1953	33	19	18	27	1.96
91394294--91394456	76	2.1	75	86	6	231	31	20	18	28	1.96
91394366--91394699	88	3.8	88	88	5	483	34	21	17	26	1.95
91394366--91394699	180	1.9	176	86	5	483	34	21	17	26	1.95
91394724--91394918	72	2.7	73	82	6	227	36	22	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91409645--91409693	22	2.2	22	92	7	82	67	0	6	26	1.14
91409978--91410028	21	2.4	22	90	3	77	58	7	1	31	1.37
91411997--91412108	27	4.2	26	86	5	134	35	22	24	17	1.95
91411997--91412108	54	2.1	54	86	3	154	35	22	24	17	1.95
91413707--91413788	26	3.2	26	92	3	139	37	25	6	30	1.80
91414798--91414829	16	2.0	16	100	0	64	25	18	12	43	1.85
91420329--91420368	18	2.2	18	90	0	62	55	0	0	45	0.99
91420302--91420359	6	9.5	6	80	10	64	44	1	0	53	1.10
91433396--91433437	14	3.2	13	80	19	52	52	0	11	35	1.38
91441464--91441505	22	1.9	22	85	9	59	59	4	0	35	1.19
91443311--91443379	12	5.8	11	75	20	50	28	2	4	63	1.28
91443307--91443387	24	3.4	23	83	6	83	30	2	4	61	1.30
91443593--91443652	18	3.4	18	75	13	63	30	1	5	63	1.25
91443598--91443638	20	2.2	18	86	8	55	31	0	2	65	1.05
91443569--91443677	25	4.5	23	69	19	53	33	5	2	57	1.36
91443885--91443931	24	1.9	25	83	12	62	31	2	12	53	1.51
91445708--91445741	17	2.0	17	88	0	50	29	32	17	20	1.96
91448148--91448178	2	15.5	2	93	0	53	54	0	0	45	0.99
91456277--91456415	67	2.1	67	95	0	251	40	16	8	34	1.79
91457038--91457072	15	2.3	15	100	0	70	28	11	8	51	1.67
91465154--91465195	20	2.1	20	86	0	57	42	33	7	16	1.75
91473329--91473401	35	1.9	40	81	15	93	60	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91483105--91483146	18	2.3	18	95	0	75	47	2	0	50	1.14
91483365--91483424	30	2.0	30	100	0	120	53	16	6	23	1.66
91486041--91486087	24	2.0	24	95	0	85	72	21	2	4	1.12
91486042--91486098	24	2.4	23	85	5	78	71	22	1	3	1.10
91488497--91488532	12	3.0	12	95	0	63	27	25	5	41	1.77
91497420--91497444	13	1.9	13	100	0	50	24	20	0	56	1.43
91497204--91497526	84	3.8	84	82	9	345	27	17	21	32	1.96
91497384--91498152	164	4.9	158	71	19	492	28	21	19	30	1.97
91499885--91499941	29	2.0	29	93	6	98	77	15	3	3	1.05
91499913--91499966	22	2.7	20	83	16	67	66	24	1	7	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311