genome.fa.s12.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  142  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48054115--48054353	40	6.1	40	92	3	362	26	28	22	22	1.99
48071663--48071688	6	4.3	6	100	0	52	69	0	0	30	0.89
48074033--48074079	20	2.3	20	86	13	78	27	36	12	23	1.91
48078905--48078983	37	2.1	37	86	4	106	25	29	20	25	1.99
48079102--48079478	47	7.9	47	93	1	619	29	29	8	32	1.87
48079102--48079478	143	2.7	143	95	0	668	29	29	8	32	1.87
48084143--48084211	34	2.0	34	85	0	93	26	21	23	28	1.99
48087832--48087953	6	19.8	6	74	17	99	48	16	17	18	1.82
48087832--48087953	19	6.6	18	72	17	99	48	16	17	18	1.82
48087841--48087982	31	4.5	31	92	0	212	50	14	16	19	1.79
48087816--48087982	62	2.7	62	85	3	212	50	14	16	19	1.78
48088118--48088192	27	2.8	27	87	2	98	36	20	24	20	1.95
48088144--48088209	26	2.6	26	83	7	64	37	19	24	18	1.93
48088868--48089065	27	7.3	26	85	4	198	25	20	19	35	1.95
48088842--48089065	54	4.2	54	83	2	263	25	20	18	35	1.95
48088869--48089065	81	2.4	81	88	0	304	25	20	18	35	1.95
48089028--48089105	40	2.0	40	97	0	147	32	19	14	34	1.91
48089071--48089129	27	2.2	27	87	6	84	28	22	15	33	1.94
48089004--48089129	67	1.9	67	85	6	175	29	19	15	34	1.93
48089115--48089426	27	11.6	27	81	2	277	31	8	21	38	1.84
48088977--48089159	94	1.9	94	81	4	217	30	18	17	34	1.94
48092395--48092576	40	4.5	40	80	3	213	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48105901--48106024	43	2.9	43	77	10	119	28	16	21	33	1.95
48110145--48110365	40	5.6	41	81	8	253	25	22	25	26	2.00
48118393--48118613	40	5.6	41	81	8	262	25	22	25	26	2.00
48130992--48131028	8	4.6	8	89	0	56	5	40	32	21	1.76
48130992--48131031	16	2.5	16	100	0	80	5	37	32	25	1.77
48140502--48140541	22	1.9	20	85	10	53	47	7	7	37	1.60
48143201--48143231	6	5.3	6	92	7	55	70	0	0	29	0.87
48150250--48150381	40	3.3	38	82	8	147	24	18	28	28	1.98
48152316--48152497	40	4.6	39	80	10	167	28	27	19	24	1.99
48152319--48152497	80	2.3	80	82	11	201	27	27	20	24	1.99
48160075--48160181	40	2.7	40	84	5	119	25	27	20	27	1.99
48160081--48160301	80	2.8	80	79	7	193	27	27	20	25	1.99
48160121--48160301	80	2.3	80	83	9	219	27	27	20	23	1.99
48160118--48160301	40	4.6	40	81	7	196	28	27	20	23	1.99
48169284--48169395	27	4.2	26	82	12	127	38	23	22	16	1.93
48169284--48169395	54	2.1	54	86	3	154	38	23	22	16	1.93
48170825--48170922	24	4.1	24	93	0	160	21	40	5	32	1.75
48177186--48177294	27	4.0	27	81	10	125	38	22	22	16	1.93
48178729--48178778	24	2.1	24	92	0	82	22	42	4	32	1.72
48180861--48180999	74	1.9	75	87	4	210	44	9	14	31	1.77
48180983--48181399	138	3.0	138	88	1	631	41	7	5	45	1.55
48183866--48183953	43	2.0	44	91	2	142	35	25	12	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48193732--48193761	14	2.1	15	93	6	53	13	10	13	63	1.52
48197381--48197500	48	2.5	48	82	8	129	19	20	28	32	1.96
48199761--48199951	27	7.0	27	81	1	220	42	23	16	17	1.88
48199761--48199951	81	2.3	81	84	0	247	42	23	16	17	1.88
48199957--48200135	27	6.6	27	81	2	171	24	14	17	43	1.86
48202104--48202157	22	2.5	22	78	3	65	22	35	29	12	1.91
48202908--48202972	18	3.4	18	72	15	67	41	7	16	33	1.77
48202906--48202972	22	3.2	22	67	16	70	41	7	16	34	1.76
48202905--48202983	40	2.0	40	100	0	158	40	10	15	34	1.81
48202913--48202980	22	3.3	22	72	16	81	39	8	16	35	1.79
48209930--48210153	40	5.6	40	82	3	263	25	23	27	24	2.00
48209930--48210189	80	3.3	79	81	6	276	25	23	26	25	2.00
48212575--48212614	21	2.0	20	90	5	62	45	25	0	30	1.54
48213524--48213568	17	2.6	17	100	0	90	13	31	22	33	1.92
48214545--48214587	12	3.5	12	82	14	52	58	9	9	23	1.58
48217200--48217314	27	4.3	26	76	10	97	44	17	19	19	1.87
48217341--48217432	27	3.5	27	83	2	107	20	18	21	39	1.93
48229752--48229803	27	1.9	27	100	0	104	46	3	3	46	1.39
48229757--48229819	27	2.3	27	83	8	74	49	3	6	41	1.44
48234430--48234650	80	2.8	80	80	7	202	27	27	20	24	1.99
48234470--48234650	80	2.3	80	83	9	219	27	27	20	23	1.99
48234467--48234650	40	4.6	40	81	7	196	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48238982--48239020	18	2.2	18	95	0	69	20	23	33	23	1.97
48242438--48242568	40	3.3	39	81	4	163	28	27	20	23	1.99
48242401--48242568	80	2.1	80	81	5	189	26	27	20	24	1.99
48247507--48247577	34	2.1	34	100	0	142	33	8	23	33	1.85
48249068--48249149	41	2.0	41	90	0	128	24	20	15	39	1.92
48258044--48258226	66	2.8	64	77	9	194	30	17	29	22	1.97
48262441--48262639	66	3.0	67	82	7	192	32	16	28	23	1.96
48262478--48262661	67	2.9	63	81	7	226	30	16	28	23	1.96
48265676--48265707	16	2.0	16	100	0	64	50	37	6	6	1.53
48266981--48267031	16	3.2	16	77	0	57	52	19	19	7	1.70
48266981--48267026	24	1.9	24	90	0	74	50	19	21	8	1.75
48267242--48267327	28	3.0	28	89	3	136	27	15	29	27	1.96
48268687--48268724	15	2.6	14	84	15	51	36	0	5	57	1.21
48271322--48271539	99	2.2	97	82	5	269	33	11	9	44	1.74
48281399--48281576	27	6.6	27	83	3	205	26	15	28	29	1.96
48281400--48281555	82	1.9	81	88	3	233	26	15	28	29	1.96
48281396--48281576	82	2.2	81	83	2	229	27	15	27	29	1.96
48285722--48285753	16	2.0	16	93	0	55	56	34	0	9	1.32
48287096--48287126	16	1.9	16	93	0	53	41	19	25	12	1.87
48287367--48287490	28	4.4	29	77	11	132	30	15	29	24	1.95
48291437--48291560	45	2.7	46	92	3	216	20	20	28	30	1.98
48301718--48301991	46	5.8	47	74	12	179	26	16	29	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48301681--48301888	46	4.5	46	79	9	194	27	16	28	27	1.97
48306196--48306306	41	2.6	43	78	8	120	29	21	18	30	1.97
48315832--48315957	40	3.2	40	94	1	209	26	27	23	23	2.00
48323857--48323982	39	3.2	38	89	5	182	26	26	22	23	2.00
48326023--48326065	16	2.7	16	85	0	59	9	20	18	51	1.74
48335387--48335594	40	5.2	40	86	2	285	23	21	29	25	1.99
48340528--48340599	29	2.5	29	84	4	83	27	30	13	27	1.94
48349092--48349243	27	5.6	27	92	3	232	31	28	13	26	1.93
48349092--48349243	55	2.8	55	93	0	250	31	28	13	26	1.93
48357135--48357286	27	5.6	27	93	3	241	30	28	13	26	1.94
48357135--48357286	55	2.8	55	94	0	259	30	28	13	26	1.94
48359819--48359892	29	2.6	29	86	4	96	25	31	16	27	1.96
48361907--48361945	19	2.1	19	90	0	60	56	2	2	38	1.27
48361941--48362006	18	3.2	20	80	17	73	63	0	3	33	1.10
48363558--48364065	44	11.5	44	83	1	604	28	26	13	31	1.94
48374084--48374287	40	5.1	40	84	2	250	23	25	27	24	2.00
48374080--48374287	80	2.6	80	90	3	312	24	24	27	24	2.00
48379289--48379324	7	5.0	7	86	6	54	66	0	2	30	1.06
48379289--48379324	15	2.5	14	86	8	54	66	0	2	30	1.06
48379309--48379403	10	9.2	10	69	17	52	61	0	8	30	1.26
48379543--48379581	19	2.1	19	90	0	60	56	2	2	38	1.27
48379578--48379638	15	4.0	14	72	17	50	65	0	3	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48379589--48379627	12	3.4	11	82	10	51	64	0	2	33	1.08
48379591--48379640	18	2.6	19	84	9	57	66	0	2	32	1.03
48383977--48384156	45	4.0	44	75	8	175	46	11	17	24	1.82
48383978--48384052	22	3.4	22	68	18	57	49	10	17	22	1.77
48383976--48384142	90	1.9	90	85	2	237	47	11	17	23	1.81
48384300--48384402	27	3.8	27	82	0	107	33	13	28	24	1.93
48384399--48384450	27	1.9	27	84	0	68	46	23	15	15	1.83
48397612--48397653	21	2.0	21	85	0	57	69	2	14	14	1.30
48399222--48399326	40	2.6	40	100	0	210	23	23	28	23	2.00
48404863--48404945	28	2.9	28	84	8	105	26	15	32	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311