genome.fa.s12.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  132  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44534924--44534997	37	2.0	37	100	0	148	40	13	2	43	1.58
44536261--44536319	26	2.3	26	85	5	84	35	15	27	22	1.94
44539578--44539740	85	1.9	85	82	5	204	26	19	25	28	1.99
44542525--44542670	40	3.7	39	85	4	184	26	21	27	24	2.00
44558464--44558538	34	2.2	34	83	4	98	37	18	5	38	1.74
44559207--44559243	19	1.9	19	89	10	58	8	16	2	72	1.19
44571675--44571744	35	2.0	35	91	5	115	27	22	11	38	1.89
44576898--44576969	35	2.1	35	89	5	110	25	25	12	37	1.91
44577219--44577919	85	8.2	85	84	5	814	16	33	32	17	1.92
44577219--44577919	43	16.5	43	85	4	859	16	33	32	17	1.92
44585935--44586055	58	2.1	59	90	1	190	33	23	17	25	1.96
44586458--44586533	24	3.2	24	78	0	89	7	38	34	19	1.81
44586810--44587214	43	9.5	43	86	5	515	16	35	31	16	1.92
44586822--44587214	170	2.3	169	84	6	535	16	35	31	17	1.92
44586805--44587212	213	1.9	213	88	5	619	16	34	31	16	1.92
44589717--44589782	33	2.0	33	93	0	114	40	4	19	34	1.72
44595453--44595675	20	11.4	20	72	13	128	57	5	13	23	1.57
44595420--44595649	20	11.8	19	71	13	123	59	6	11	22	1.56
44595420--44595548	58	2.2	58	84	4	161	60	8	11	19	1.56
44595460--44595721	117	2.2	116	76	14	263	58	6	12	22	1.56
44595500--44595724	97	2.3	96	79	9	233	57	6	13	23	1.59
44595994--44596051	19	3.0	20	76	5	64	62	8	1	27	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44595991--44596055	20	3.3	19	81	12	78	61	7	4	26	1.43
44597097--44597155	24	2.5	24	80	5	66	42	1	3	52	1.28
44598051--44598118	27	2.5	27	81	9	68	48	4	0	47	1.22
44599493--44599637	62	2.3	62	83	4	202	34	11	22	31	1.90
44599621--44599694	21	3.4	21	74	22	64	33	14	25	25	1.94
44599618--44599694	22	3.5	22	78	5	86	33	14	25	25	1.94
44599794--44599924	34	3.8	33	83	6	122	45	11	8	35	1.71
44602677--44602710	18	1.9	17	94	5	59	26	8	0	64	1.22
44604105--44604159	29	1.9	28	88	3	83	50	5	1	41	1.36
44605583--44605634	27	2.0	27	82	14	65	21	13	19	46	1.84
44611770--44611827	6	9.5	6	73	3	53	75	3	5	15	1.11
44620257--44620334	39	2.0	39	89	0	120	30	12	21	34	1.91
44636335--44636392	15	3.9	15	83	0	62	10	15	13	60	1.59
44639512--44639610	42	2.3	43	84	5	121	17	19	31	32	1.94
44639546--44639636	43	2.1	43	83	2	121	18	17	31	31	1.94
44642286--44642361	26	2.9	26	88	0	107	31	19	9	39	1.83
44648288--44648327	21	1.9	21	85	10	55	35	25	10	30	1.88
44653830--44653872	17	2.5	17	88	7	61	30	16	20	32	1.95
44653841--44653874	17	2.0	17	100	0	68	23	17	23	35	1.95
44656224--44656290	34	2.0	34	96	0	125	56	13	8	20	1.64
44661387--44661445	30	1.9	31	86	3	84	18	23	1	55	1.51
44665962--44666001	20	2.1	19	85	4	53	30	2	0	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44672540--44672697	68	2.3	68	97	0	298	24	30	14	31	1.95
44672540--44672723	68	2.7	67	91	5	264	23	28	14	33	1.94
44680059--44680216	68	2.3	68	77	13	153	20	27	15	35	1.94
44681777--44682009	115	2.0	115	96	1	432	34	12	15	38	1.84
44684254--44684283	15	2.0	15	93	0	51	33	16	10	40	1.82
44684845--44684883	19	2.0	20	85	5	53	35	10	5	48	1.59
44685924--44686099	58	3.0	58	94	0	316	32	14	16	36	1.89
44689308--44689348	19	2.2	19	86	8	57	63	2	2	31	1.20
44700344--44700388	20	2.3	20	84	3	56	24	15	31	28	1.96
44700379--44700517	60	2.3	59	81	6	154	28	20	25	25	1.99
44700425--44700520	28	3.3	27	72	22	86	28	19	26	26	1.99
44703632--44703679	21	2.4	19	76	10	51	35	10	4	50	1.56
44716430--44716470	17	2.4	16	80	11	55	53	0	0	46	1.00
44716468--44716519	13	3.6	14	76	12	52	69	1	1	26	1.10
44716808--44716861	20	2.6	20	88	5	72	48	7	9	35	1.63
44716818--44716891	30	2.4	31	81	2	87	48	9	8	33	1.65
44717809--44717845	20	1.9	18	89	10	56	43	0	21	35	1.53
44719636--44719789	50	3.1	50	94	1	276	30	7	22	39	1.81
44721336--44721553	40	5.5	40	89	2	298	22	23	27	25	2.00
44723909--44723950	21	2.0	21	85	0	57	42	7	11	38	1.69
44725480--44725555	23	3.4	22	82	7	82	47	27	10	14	1.77
44726373--44726402	12	2.5	12	94	0	51	6	20	40	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44739959--44740113	28	5.5	29	74	10	126	26	18	29	25	1.98
44739956--44740089	57	2.4	56	85	5	189	28	17	29	25	1.97
44744116--44746610	833	3.0	828	86	2	3360	44	11	20	24	1.84
44746850--44746899	23	2.3	23	83	12	63	16	28	34	22	1.95
44747997--44748108	44	2.5	44	82	10	129	25	32	19	23	1.98
44747997--44748211	47	4.7	46	77	10	172	23	31	20	25	1.98
44749995--44750140	37	3.9	37	97	0	256	26	31	19	23	1.98
44750347--44750540	47	4.1	47	90	0	289	26	28	11	33	1.91
44762458--44762487	13	2.3	13	94	0	51	13	33	33	20	1.91
44767118--44767265	74	2.0	74	90	0	233	27	13	10	47	1.76
44769960--44770135	27	6.6	27	81	5	187	26	14	28	30	1.95
44769964--44770114	80	1.9	79	87	4	223	26	14	28	30	1.95
44778045--44778201	27	5.8	27	83	4	190	27	15	28	29	1.96
44778046--44778201	82	1.9	81	88	3	233	26	15	28	29	1.96
44778045--44778199	55	2.9	54	83	3	195	27	15	27	29	1.96
44778044--44778220	27	6.6	27	81	5	171	26	16	27	29	1.97
44778042--44778220	82	2.2	81	83	4	229	26	16	27	29	1.97
44781496--44781572	33	2.3	33	84	0	91	27	14	27	31	1.95
44781518--44781583	33	2.0	33	84	0	87	27	21	24	27	1.99
44784405--44784430	13	2.0	13	100	0	52	38	23	15	23	1.92
44788990--44789171	27	6.8	27	91	2	305	36	19	19	25	1.95
44788990--44789171	53	3.4	54	95	2	332	36	19	19	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44788990--44789170	80	2.3	80	92	2	301	36	19	18	25	1.94
44788990--44789198	80	2.6	79	83	9	255	34	19	19	26	1.95
44789832--44789883	27	2.0	26	84	3	68	17	26	21	34	1.95
44792234--44792454	27	8.2	27	85	0	307	37	17	18	26	1.93
44792234--44792454	54	4.1	54	90	0	343	37	17	18	26	1.93
44799513--44800602	605	1.8	605	81	3	1370	41	11	20	27	1.86
44800928--44800973	10	4.5	10	81	5	56	13	23	21	41	1.88
44800925--44800973	21	2.4	20	82	3	62	12	22	22	42	1.86
44815702--44815864	47	3.5	46	75	10	168	28	20	28	23	1.99
44815702--44815916	94	2.3	93	83	3	270	28	19	29	22	1.98
44817762--44817817	23	2.4	24	87	3	78	21	30	12	35	1.90
44818614--44818732	27	4.4	27	91	0	175	31	10	24	33	1.88
44832466--44832744	138	2.0	138	86	2	384	36	11	23	28	1.90
44836184--44836254	28	2.5	28	86	4	90	33	25	11	29	1.91
44838934--44839084	40	3.8	41	87	2	184	22	27	25	24	2.00
44847105--44847245	37	3.7	37	80	10	126	24	28	23	23	2.00
44853520--44853587	34	2.0	34	100	0	136	38	14	11	35	1.83
44853794--44854017	40	5.6	40	88	1	308	29	25	21	23	1.99
44858413--44858523	42	2.8	37	74	19	100	29	20	18	31	1.96
44861817--44861931	43	2.7	43	87	5	162	27	29	16	26	1.97
44861817--44861946	43	3.0	43	75	12	133	30	28	16	24	1.96
44866699--44866974	47	5.8	47	72	14	217	28	18	29	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44866656--44866974	94	3.4	96	76	15	238	29	18	28	23	1.98
44866705--44866973	145	1.9	142	83	5	353	28	17	29	24	1.97
44871760--44871981	39	5.7	40	85	7	253	24	22	27	25	2.00
44871760--44871979	117	1.9	118	83	6	286	25	22	27	25	2.00
44871760--44872014	78	3.3	78	80	9	220	25	21	27	24	2.00
44882850--44883033	40	4.6	39	77	8	165	27	27	21	23	1.99
44882813--44883033	80	2.8	80	78	7	193	26	27	21	24	1.99
44882853--44883033	80	2.3	80	83	9	210	27	27	21	23	1.99
44886208--44886341	43	3.2	43	77	11	152	31	29	15	23	1.96
44887292--44887324	16	2.1	16	94	0	57	33	36	15	15	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311