genome.fa.s12.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  193  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66425441--66425534	49	2.0	47	95	4	170	29	28	8	32	1.87
66427996--66467424	220	179.7	220	79	9	12860	28	22	17	32	1.96
66427996--66462107	660	51.6	660	79	10	19699	28	22	17	32	1.96
66432750--66432910	89	1.8	88	87	10	240	26	24	18	31	1.97
66432750--66432910	87	1.8	87	87	10	238	26	24	18	31	1.97
66433185--66433350	89	1.9	88	83	6	219	28	22	18	30	1.97
66434730--66434890	89	1.8	89	85	7	231	26	25	18	29	1.98
66434950--66435110	89	1.8	87	84	5	216	30	22	14	31	1.94
66434597--66436236	781	2.1	782	87	2	2313	28	22	16	32	1.96
66434817--66436012	561	2.1	562	86	2	1633	28	22	16	32	1.96
66435037--66435802	341	2.2	347	83	3	970	27	21	16	33	1.95
66435731--66435891	89	1.8	87	85	5	225	28	24	18	28	1.98
66435390--66436891	439	3.4	438	86	2	1972	28	22	16	32	1.96
66435517--66436895	659	2.1	659	88	0	2044	28	22	16	31	1.96
66436697--66437013	131	2.5	125	84	7	374	26	21	17	34	1.95
66437538--66437620	43	1.9	43	85	2	112	26	26	16	30	1.97
66438491--66438651	89	1.8	89	86	5	238	27	26	18	28	1.98
66438931--66439091	89	1.8	87	81	5	198	30	22	14	31	1.94
66439238--66439557	131	2.5	125	82	6	351	26	20	17	35	1.95
66440152--66440313	89	1.8	87	81	7	202	27	23	15	33	1.95
66440372--66440532	89	1.8	89	84	5	220	27	21	18	32	1.96
66441032--66441192	89	1.8	89	86	5	238	27	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66441782--66442098	131	2.5	123	83	7	361	26	21	17	34	1.95
66441119--66442764	781	2.1	787	87	2	2365	28	22	17	32	1.96
66442698--66446518	781	4.9	782	73	12	3022	28	22	17	32	1.96
66443621--66443703	43	1.9	43	82	7	105	26	24	15	33	1.95
66443694--66443854	89	1.8	87	85	7	227	27	24	17	31	1.97
66444354--66444514	89	1.8	87	85	5	225	26	24	18	31	1.98
66445014--66445174	89	1.8	89	84	5	220	31	21	16	31	1.95
66445234--66445394	89	1.8	89	85	7	231	27	24	17	30	1.97
66446016--66446176	89	1.8	87	85	7	227	27	22	18	31	1.97
66446456--66446616	89	1.8	87	85	5	225	27	22	16	32	1.96
66447236--66447396	89	1.8	87	85	5	225	28	24	16	30	1.97
66447896--66448056	89	1.8	87	85	5	225	27	22	16	32	1.96
66447548--66449182	781	2.1	785	90	1	2526	28	22	16	32	1.95
66448677--66448837	89	1.8	87	86	5	234	27	24	17	30	1.97
66449117--66449277	89	1.8	87	88	5	243	26	23	19	31	1.98
66449778--66449938	89	1.8	87	88	5	243	26	23	19	31	1.98
66450433--66450591	87	1.8	87	88	8	243	25	24	18	30	1.98
66451080--66451270	90	2.1	87	79	8	206	30	21	17	30	1.96
66452440--66452522	43	1.9	43	85	2	112	26	26	15	31	1.96
66452513--66452674	87	1.8	87	83	7	211	29	20	16	33	1.95
66452953--66453113	89	1.8	89	88	5	247	27	25	18	28	1.98
66453173--66453333	87	1.8	87	84	5	216	28	22	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66454488--66454646	87	1.8	87	84	8	216	27	23	17	31	1.97
66454705--66454863	89	1.8	85	86	8	230	28	23	16	31	1.96
66456769--66456931	89	1.8	89	82	6	213	28	22	16	32	1.96
66457203--66457361	87	1.9	87	86	5	234	27	23	18	30	1.98
66458507--66458667	89	1.8	89	87	2	245	29	22	16	31	1.96
66458727--66458887	89	1.8	87	84	7	218	27	24	17	31	1.97
66459941--66460101	89	1.8	87	84	5	216	30	24	14	30	1.95
66460248--66460498	131	1.9	131	84	6	337	24	21	17	36	1.94
66460942--66461102	89	1.8	87	84	5	216	30	24	14	30	1.95
66461382--66461542	89	1.8	87	84	7	218	27	24	17	31	1.97
66461602--66461762	89	1.8	87	84	5	216	30	24	14	30	1.95
66461909--66462228	131	2.5	125	82	9	330	27	20	17	35	1.94
66461249--66462884	781	2.1	788	88	2	2403	28	21	17	32	1.96
66461469--66462668	561	2.1	567	87	2	1723	28	22	16	32	1.96
66461827--66462448	341	1.8	342	91	1	1032	27	20	17	34	1.95
66463043--66463203	89	1.8	89	86	5	238	26	25	18	29	1.98
66463190--66463272	43	1.9	43	85	2	112	26	26	15	31	1.96
66464432--66464592	89	1.8	87	86	5	234	27	23	18	31	1.97
66464519--66464769	131	1.9	133	89	3	391	25	21	17	34	1.96
66465203--66465363	89	1.8	89	84	5	220	27	24	17	30	1.97
66466083--66466243	89	1.8	87	82	5	207	27	23	17	31	1.97
66466743--66466903	89	1.8	89	86	7	240	27	24	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66466963--66467123	89	1.8	87	84	5	216	30	24	14	30	1.95
66467419--66469689	220	10.4	220	89	0	3345	27	22	17	32	1.96
66468154--66468314	89	1.8	87	88	5	243	26	25	18	29	1.98
66468301--66468383	43	1.9	43	85	2	112	26	26	15	31	1.96
66472979--66473189	40	5.3	40	79	2	221	25	22	26	26	2.00
66472979--66473162	79	2.3	81	83	3	239	26	22	26	25	2.00
66472979--66473193	79	2.7	80	80	7	226	25	22	26	26	2.00
66476396--66476523	28	4.5	28	86	6	168	28	12	26	32	1.93
66476396--66476523	57	2.2	57	87	2	177	28	12	26	32	1.93
66478453--66478508	7	7.9	7	81	15	62	0	16	0	83	0.64
66478460--66478509	9	5.6	9	79	9	57	0	16	0	84	0.63
66478453--66478508	16	3.9	15	76	23	66	0	16	0	83	0.64
66478454--66478509	29	2.0	29	86	10	80	0	16	0	83	0.64
66484075--66484140	19	3.2	21	87	6	64	36	21	7	34	1.82
66484092--66484189	19	5.2	19	90	7	155	35	15	10	38	1.81
66484092--66484189	36	2.6	37	88	9	144	35	15	10	38	1.81
66491216--66491323	51	2.1	50	91	3	180	24	22	5	48	1.72
66493018--66493192	94	1.9	94	93	0	305	37	10	6	46	1.63
66498576--66498725	40	3.7	39	75	3	156	30	20	22	28	1.98
66499585--66499671	7	10.9	8	72	14	56	60	4	1	33	1.24
66499619--66499657	7	5.4	7	90	3	60	69	2	0	28	1.02
66504280--66504543	43	6.2	43	79	4	246	25	17	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66508343--66508460	43	2.8	42	78	7	139	30	23	14	31	1.94
66511979--66512118	40	3.5	40	90	3	212	25	27	22	23	2.00
66522441--66522542	28	3.7	27	78	3	87	26	32	14	26	1.95
66529891--66530154	40	6.5	40	90	2	343	25	22	26	25	2.00
66537753--66537976	40	5.5	40	88	6	308	24	22	28	25	1.99
66540155--66540235	28	2.9	28	78	10	94	30	29	12	27	1.93
66541667--66541922	27	9.6	27	81	7	254	39	21	9	29	1.85
66541934--66542049	27	4.3	27	86	4	153	32	21	6	38	1.80
66541909--66542021	54	2.1	53	80	6	120	34	17	8	38	1.81
66541932--66542049	54	2.2	54	89	0	173	33	21	6	38	1.80
66542107--66542179	26	2.7	27	79	8	78	39	21	17	20	1.92
66542128--66542178	27	1.9	26	88	4	75	33	23	21	21	1.97
66542991--66543085	25	3.8	25	88	2	138	27	24	23	25	2.00
66542991--66543116	25	5.0	24	82	7	128	29	22	23	25	1.99
66542989--66543110	50	2.4	50	80	8	142	27	23	22	25	2.00
66543232--66543323	42	2.2	42	96	0	166	27	11	21	39	1.89
66544466--66544496	16	1.9	16	93	0	53	35	22	0	41	1.54
66544463--66544502	20	2.0	20	85	0	53	37	22	0	40	1.54
66544687--66544941	55	4.8	53	79	7	234	21	25	16	36	1.94
66544734--66544931	108	1.8	110	86	2	292	23	25	16	34	1.95
66552033--66552063	16	1.9	16	93	0	53	35	22	0	41	1.54
66552030--66552069	20	2.0	20	85	0	53	37	22	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66552301--66552459	53	2.9	54	85	5	214	22	24	17	35	1.95
66565637--66565671	18	1.9	18	88	11	54	71	0	0	28	0.86
66565637--66565672	19	1.9	18	88	5	54	72	0	0	27	0.85
66565926--66565983	22	2.6	22	81	7	64	41	17	5	36	1.72
66640005--66640104	29	3.5	28	86	8	114	26	13	28	33	1.93
66640033--66640118	29	3.0	28	85	8	102	30	11	24	33	1.91
66647810--66647852	18	2.4	18	81	14	61	46	4	9	39	1.57
66648290--66648387	27	3.5	28	88	5	128	25	13	28	32	1.93
66648318--66648401	27	3.0	27	87	5	96	29	11	25	33	1.91
66657262--66657379	29	4.1	29	83	4	125	27	14	31	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311