genome.fa.s12.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  201  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69218487--69218702	117	1.8	117	87	5	321	30	30	19	19	1.97
69226718--69226756	20	2.0	20	89	0	60	35	0	15	48	1.45
69226846--69227017	84	2.0	85	96	1	319	33	12	29	24	1.92
69229007--69229061	24	2.3	23	84	9	67	74	1	20	3	1.06
69230303--69230486	40	4.6	41	82	9	222	23	22	28	25	1.99
69230303--69230484	79	2.3	80	83	6	219	24	22	28	25	2.00
69230356--69230519	79	2.1	78	84	5	206	25	20	28	25	1.99
69237014--69237070	25	2.4	25	82	5	73	71	1	21	5	1.14
69238304--69238488	40	4.6	39	83	5	203	24	22	27	25	2.00
69238304--69238486	79	2.3	81	83	7	223	24	22	27	25	2.00
69246160--69246196	10	3.7	10	92	7	58	37	10	18	32	1.86
69246166--69246230	21	3.0	21	77	2	58	40	12	15	32	1.84
69246261--69246333	25	2.9	25	87	0	101	30	26	19	24	1.98
69253336--69253376	11	3.8	11	93	3	66	36	9	19	34	1.85
69261214--69261247	14	2.6	13	90	9	52	23	5	8	61	1.47
69261246--69261502	128	2.0	128	98	0	496	34	13	21	30	1.92
69262360--69262566	53	3.9	54	80	8	217	21	25	17	35	1.95
69262371--69262558	55	3.5	53	81	7	209	20	25	18	35	1.96
69262591--69262711	47	2.5	48	71	9	113	23	23	18	35	1.95
69266863--69267038	46	3.8	46	77	7	194	19	19	30	29	1.97
69266860--69267030	93	1.8	93	91	0	279	19	20	30	28	1.97
69270469--69270693	40	5.6	40	82	3	254	23	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69270475--69270663	83	2.3	80	86	2	252	22	21	29	27	1.99
69272255--69272305	19	2.5	19	87	9	66	17	37	29	15	1.91
69276337--69276515	40	4.4	40	86	7	229	25	29	23	22	1.99
69279318--69279494	27	6.6	27	82	5	196	27	15	27	29	1.96
69279319--69279473	82	1.9	80	86	5	222	27	15	27	29	1.96
69287390--69287565	27	6.6	26	82	8	194	27	15	27	28	1.96
69287391--69287545	81	1.9	81	85	7	217	27	16	27	28	1.97
69291874--69291934	31	2.0	31	100	0	122	36	16	16	31	1.91
69298218--69298425	54	3.9	54	76	12	176	21	25	15	36	1.94
69304844--69305051	55	3.9	54	81	4	222	22	25	17	35	1.95
69305078--69305195	47	2.5	47	78	15	127	23	21	21	33	1.97
69305198--69305282	44	1.9	44	83	4	109	24	25	14	35	1.93
69307800--69307921	43	2.9	41	81	11	156	27	23	17	31	1.97
69324359--69324408	25	2.0	25	100	0	100	32	28	8	32	1.86
69329991--69330112	49	2.6	47	80	5	129	26	31	17	24	1.97
69332602--69332714	43	2.7	43	84	1	156	31	25	18	23	1.97
69345678--69345720	2	21.5	2	90	0	68	0	53	0	46	1.00
69349736--69349772	18	2.1	17	90	5	56	0	21	0	78	0.75
69353329--69353372	19	2.3	20	81	18	58	4	18	13	63	1.46
69359356--69359385	15	2.1	14	93	6	51	66	0	26	6	1.16
69362864--69362936	27	2.7	27	73	0	74	39	23	5	31	1.77
69362920--69363042	27	4.6	27	86	0	147	36	17	19	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69362928--69363034	54	2.0	54	88	3	162	36	18	19	25	1.95
69365495--69366024	47	11.3	47	91	0	835	34	8	28	27	1.87
69365639--69365714	22	3.3	22	66	16	64	32	10	30	26	1.90
69367888--69367948	22	2.8	22	85	9	88	18	21	24	36	1.95
69368019--69368099	27	3.0	27	83	5	76	18	22	20	38	1.94
69368216--69368329	6	18.5	6	67	15	63	19	19	14	46	1.84
69368216--69368305	25	3.6	25	86	0	126	20	18	15	45	1.85
69374699--69374758	28	2.2	27	90	3	93	33	26	25	15	1.95
69375185--69375237	27	2.0	27	84	0	70	28	15	20	35	1.93
69381397--69381553	56	2.8	54	81	5	163	29	33	17	19	1.94
69388885--69389038	56	2.8	55	79	6	150	29	31	16	21	1.96
69405043--69405074	16	2.0	16	93	0	55	56	0	9	34	1.32
69405436--69405587	42	3.5	43	75	12	159	25	17	24	32	1.96
69405436--69405607	43	4.0	43	75	8	170	25	17	25	32	1.97
69407741--69407854	43	2.7	43	80	11	135	31	28	17	21	1.96
69415768--69415842	20	3.8	20	69	0	60	28	22	36	13	1.92
69415853--69415904	20	2.6	21	77	20	65	28	25	26	19	1.98
69418503--69418589	24	3.2	27	79	17	101	33	24	22	19	1.97
69418695--69418784	27	3.3	27	93	3	153	32	7	24	35	1.84
69419032--69419061	8	3.8	8	90	0	51	3	23	23	50	1.64
69425909--69425954	14	3.4	13	79	8	56	76	2	2	19	1.00
69425913--69425949	19	1.9	19	88	0	56	78	2	2	16	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69426388--69426502	55	2.1	56	83	8	146	34	21	24	19	1.96
69426413--69426502	27	3.2	27	85	7	119	32	23	24	20	1.98
69426608--69426700	28	3.3	28	96	0	168	31	7	26	34	1.84
69429227--69429301	37	2.0	37	100	0	150	42	8	13	36	1.73
69433539--69433611	15	4.9	15	89	0	110	12	15	15	57	1.65
69442334--69442360	7	3.9	7	100	0	54	29	0	55	14	1.40
69444159--69444208	26	2.0	25	88	11	75	56	8	10	26	1.60
69456588--69456650	20	3.1	21	72	9	67	30	17	31	20	1.96
69456584--69456667	40	2.1	40	81	0	96	32	16	32	19	1.94
69456632--69456720	40	2.2	40	86	4	117	32	16	30	20	1.95
69458736--69458912	46	3.9	44	77	11	185	22	20	28	28	1.98
69458733--69458904	93	1.8	93	91	0	281	22	20	29	27	1.99
69460597--69460654	27	2.1	27	87	0	80	41	18	12	27	1.86
69464379--69464431	27	2.0	27	84	0	70	39	11	16	32	1.85
69471170--69471244	27	2.7	28	89	6	109	77	5	5	12	1.10
69476502--69476530	13	2.2	13	100	0	58	17	37	31	13	1.89
69479531--69479587	25	2.3	25	93	6	98	5	43	15	35	1.70
69479689--69479722	13	2.6	13	100	0	68	5	35	41	17	1.74
69481442--69481583	49	2.9	50	82	1	178	28	19	21	30	1.97
69484790--69484843	15	3.6	15	80	9	65	11	7	12	68	1.39
69484785--69484843	30	2.0	29	86	3	82	10	6	16	66	1.43
69486993--69487230	49	4.8	49	86	2	305	24	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69486985--69487230	99	2.5	100	85	2	343	24	19	27	28	1.98
69489720--69489929	40	5.3	40	92	0	314	23	20	29	26	1.99
69497649--69497858	40	5.3	40	92	0	314	23	20	29	26	1.99
69501364--69501437	25	3.0	25	73	0	67	31	18	21	28	1.97
69504158--69504455	138	2.1	140	90	2	467	46	4	7	41	1.52
69504331--69504559	116	2.0	116	91	0	368	45	4	8	41	1.55
69504539--69504681	75	1.9	75	88	8	220	34	12	6	46	1.69
69510947--69510993	21	2.1	24	84	11	64	29	2	4	63	1.25
69511775--69511816	21	2.1	21	87	12	63	47	4	2	45	1.36
69512468--69512502	17	2.1	17	100	0	70	34	5	20	40	1.76
69513149--69513180	14	2.3	14	94	0	55	31	9	31	28	1.88
69519835--69519904	23	3.0	23	69	12	63	31	15	25	27	1.96
69522658--69522695	19	2.0	19	89	0	58	34	50	2	13	1.55
69523660--69523689	15	2.1	14	93	6	51	10	0	43	46	1.37
69524992--69525057	28	2.4	28	81	0	69	27	24	21	27	1.99
69525086--69525142	21	2.7	21	94	0	96	40	49	5	5	1.48
69531057--69531137	34	2.4	34	87	2	119	23	23	24	28	2.00
69532415--69532439	10	2.5	10	100	0	50	68	0	32	0	0.90
69542849--69542894	24	1.9	24	82	8	58	21	8	2	67	1.29
69548471--69548546	34	2.2	34	85	0	107	21	25	26	27	1.99
69557096--69557229	40	3.3	40	82	0	151	27	20	23	29	1.99
69557240--69557299	28	2.1	28	90	0	93	26	10	30	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69572377--69572405	14	2.1	14	100	0	58	20	6	34	37	1.80
69574979--69575164	67	2.8	67	80	9	177	31	16	29	22	1.95
69575003--69575186	67	2.8	64	77	8	194	29	16	29	23	1.96
69576984--69577023	20	2.0	20	85	9	55	20	27	0	52	1.46
69576982--69577016	16	2.2	16	90	5	54	20	25	0	54	1.45
69578769--69578797	5	5.8	5	100	0	58	37	0	0	62	0.96
69588055--69588112	26	2.3	26	81	3	73	53	15	6	24	1.66
69588063--69588113	26	2.0	26	88	0	75	50	13	7	27	1.69
69589813--69589846	17	2.0	17	88	0	50	52	5	14	26	1.64
69593127--69593281	43	3.6	44	81	3	181	27	13	25	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311