genome.fa.s12.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  129  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43524708--43524775	17	4.0	16	73	17	57	27	17	1	52	1.53
43524684--43524775	28	3.2	28	79	11	98	31	18	1	48	1.55
43524708--43524775	12	6.1	10	72	21	55	27	17	1	52	1.53
43524826--43524942	57	2.1	55	82	7	139	29	11	3	55	1.51
43524909--43524956	23	2.2	22	88	7	71	27	6	0	66	1.15
43525168--43525242	5	12.5	6	71	23	52	26	16	0	57	1.39
43525168--43525236	12	5.8	12	79	14	72	26	17	0	56	1.41
43525168--43525247	23	3.3	23	86	8	99	26	15	0	58	1.37
43525168--43525247	12	6.7	12	74	22	62	26	15	0	58	1.37
43525250--43525294	21	2.1	22	83	4	56	22	8	2	66	1.30
43525192--43525288	21	4.1	23	67	21	58	24	10	1	63	1.32
43525191--43525296	23	4.5	22	72	17	81	25	11	0	62	1.35
43525216--43525354	15	9.1	15	68	17	65	24	8	2	64	1.36
43525349--43525432	29	2.9	30	82	5	100	25	14	3	57	1.53
43525338--43525445	29	3.7	29	79	8	96	24	13	2	59	1.48
43526092--43526123	4	8.0	4	92	0	55	78	21	0	0	0.76
43527115--43527193	25	3.1	26	73	14	67	60	3	7	27	1.41
43527299--43527421	26	5.0	25	70	18	89	65	4	1	28	1.23
43527309--43527370	11	5.2	12	74	16	58	67	3	1	27	1.15
43527309--43527423	23	4.7	26	72	16	77	65	6	0	27	1.22
43527343--43527441	51	2.0	50	84	6	128	60	9	2	28	1.38
43527438--43527581	50	3.0	48	81	9	157	56	6	6	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43527429--43527610	47	3.7	47	80	7	168	57	5	7	30	1.49
43530544--43530572	2	14.5	2	100	0	58	51	0	48	0	1.00
43536125--43536149	11	2.3	11	100	0	50	24	0	8	68	1.16
43541119--43541166	25	1.9	25	83	8	62	58	4	0	37	1.18
43543756--43543795	18	2.2	19	86	4	55	27	7	22	42	1.80
43546365--43546425	20	3.0	21	82	15	76	67	4	3	24	1.26
43550321--43550429	48	2.3	48	86	0	146	33	27	19	20	1.96
43550718--43550744	3	9.0	3	100	0	54	66	0	0	33	0.92
43551469--43551510	9	3.8	11	85	14	52	57	4	0	38	1.20
43555944--43556051	55	2.0	55	80	7	121	25	30	20	23	1.98
43559198--43559258	30	2.0	30	83	0	77	34	21	4	39	1.75
43560178--43560271	48	2.0	48	87	4	136	37	26	17	19	1.93
43560195--43560286	48	1.9	48	88	0	139	40	26	15	18	1.90
43580634--43580727	25	3.8	25	78	10	88	24	23	19	32	1.97
43585618--43585741	49	2.6	48	79	8	128	25	29	19	25	1.98
43586449--43586498	20	2.6	19	84	9	57	36	22	0	42	1.54
43587890--43588056	64	2.6	63	79	6	160	47	14	17	19	1.82
43588137--43588198	28	2.2	28	85	0	88	32	8	33	25	1.85
43592044--43592112	21	3.4	21	67	15	63	36	2	7	53	1.44
43592099--43592129	15	2.1	14	94	5	53	35	3	6	54	1.42
43593473--43593515	23	2.0	23	86	9	63	13	4	37	44	1.65
43596508--43596571	34	1.9	33	87	9	94	31	28	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43599064--43599178	44	2.6	45	83	2	133	37	13	20	27	1.91
43610363--43610400	20	1.9	20	88	0	58	36	31	13	18	1.89
43611575--43611634	30	2.0	30	93	0	102	26	0	10	63	1.26
43611745--43611779	16	2.1	16	89	5	52	57	0	0	42	0.99
43619858--43619886	14	2.1	14	100	0	58	34	6	0	58	1.25
43625506--43625579	31	2.4	31	81	0	85	40	8	6	44	1.60
43629490--43629541	16	3.3	15	71	23	52	51	1	13	32	1.52
43629478--43629543	33	2.0	33	96	0	123	48	4	13	33	1.63
43631852--43631942	44	2.1	44	100	0	182	35	0	21	42	1.53
43632222--43632369	43	3.4	43	77	9	149	28	14	24	33	1.94
43658974--43659023	25	2.0	25	88	0	73	38	2	2	58	1.21
43662319--43662586	46	5.8	46	72	15	246	28	27	20	23	1.99
43662327--43662591	93	2.8	93	93	0	449	27	27	20	23	1.99
43662373--43662538	47	3.6	46	77	8	192	28	26	19	25	1.98
43665046--43665238	6	31.3	6	70	16	110	51	13	15	19	1.77
43665075--43665184	31	3.5	31	77	4	123	52	16	13	17	1.74
43665073--43665153	37	2.2	37	88	0	117	51	14	14	18	1.76
43665118--43665207	19	4.5	19	71	22	58	52	13	15	18	1.75
43665112--43665175	25	2.6	25	89	0	101	53	14	14	18	1.73
43665075--43665238	62	2.6	62	90	0	247	51	14	15	18	1.77
43665178--43665238	25	2.4	25	83	0	86	49	11	18	21	1.78
43665357--43665416	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43665688--43665908	27	8.3	27	83	3	241	24	19	19	36	1.94
43665692--43665908	80	2.7	81	82	5	271	24	19	18	36	1.94
43665944--43666394	27	16.7	26	81	5	427	30	7	21	39	1.82
43666001--43666394	27	14.6	27	85	0	500	30	7	21	39	1.81
43666001--43666394	54	7.3	54	90	0	581	30	7	21	39	1.81
43667615--43667655	10	4.1	10	90	0	55	31	0	4	63	1.15
43672122--43672161	7	5.7	7	93	0	71	17	52	0	30	1.45
43672122--43672168	21	2.2	21	96	0	85	19	48	0	31	1.49
43673756--43673940	50	3.7	50	84	3	223	28	20	29	21	1.98
43676020--43676078	30	2.0	30	82	0	73	32	5	23	38	1.77
43676422--43676589	48	3.5	48	83	1	185	26	20	26	26	1.99
43683816--43684019	53	3.8	53	75	5	160	38	17	23	20	1.93
43687854--43687900	23	2.0	23	100	0	94	31	17	12	38	1.87
43696505--43696606	43	2.4	42	83	1	123	20	17	30	31	1.96
43696581--43696662	43	1.9	43	87	0	119	19	18	30	31	1.96
43700267--43700312	22	2.0	23	84	12	60	30	10	10	47	1.73
43703810--43704023	101	2.1	102	84	0	268	34	23	13	29	1.92
43706112--43706251	48	2.9	48	87	3	183	27	21	24	26	1.99
43706110--43706340	48	5.0	46	77	7	182	26	19	25	28	1.99
43706112--43706340	96	2.5	91	80	6	219	27	20	24	27	1.99
43708154--43708378	40	5.6	40	82	2	254	24	26	23	25	2.00
43708118--43708378	80	3.3	78	80	6	274	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43712037--43712149	44	2.6	42	80	9	129	23	15	26	33	1.95
43712037--43712164	42	3.0	41	77	10	123	25	15	25	33	1.95
43719524--43719677	43	3.6	43	73	15	140	25	17	27	29	1.97
43721951--43722181	50	4.7	48	80	5	237	29	24	19	26	1.98
43721939--43722181	99	2.5	99	80	4	276	29	24	19	26	1.99
43727449--43727648	50	4.0	51	77	5	183	31	25	18	25	1.97
43727458--43727648	49	3.8	49	74	7	163	31	26	18	24	1.97
43737361--43737458	49	2.0	49	100	0	196	34	12	26	26	1.92
43738637--43738765	47	2.8	47	89	3	181	23	14	29	32	1.94
43745513--43745602	29	3.1	29	95	0	162	28	15	23	32	1.95
43758543--43758634	44	2.2	42	82	5	105	33	25	15	26	1.95
43759445--43759475	15	2.1	15	100	0	62	45	6	12	35	1.68
43767116--43767155	21	1.9	21	85	10	55	20	25	22	32	1.98
43770573--43770997	47	9.1	47	94	1	710	31	9	30	28	1.88
43771116--43771193	36	2.1	37	90	2	122	24	19	30	25	1.98
43773046--43773191	43	3.4	43	100	0	292	22	15	35	26	1.94
43773173--43773246	29	2.6	29	89	4	105	25	16	32	25	1.96
43773556--43773712	40	3.9	40	76	7	131	26	22	26	24	2.00
43774630--43774723	40	2.4	39	90	1	143	24	22	26	26	2.00
43776905--43776934	15	2.0	15	100	0	60	40	20	0	40	1.52
43778415--43778447	7	4.9	7	85	7	50	60	0	0	39	0.97
43779605--43779843	55	4.5	53	79	9	202	36	17	23	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43779605--43779804	108	1.8	110	84	4	280	36	16	24	23	1.94
43779925--43779972	23	2.0	24	88	4	71	47	10	20	20	1.79
43780048--43780078	16	1.9	16	93	0	53	41	0	22	35	1.54
43785757--43785932	46	3.8	46	76	12	207	21	19	28	30	1.98
43785754--43785924	93	1.8	93	93	0	297	21	20	29	29	1.98
43788460--43788633	46	3.7	46	80	6	172	26	20	30	22	1.98
43793586--43793777	40	4.8	40	79	8	178	26	21	26	26	1.99
43793587--43793771	80	2.3	81	81	7	209	25	21	26	26	2.00
43795150--43795325	46	3.8	46	77	4	192	19	20	29	30	1.97
43795147--43795317	93	1.8	93	91	0	279	19	21	29	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311