genome.fa.s12.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  106  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34819553--34819586	18	1.9	17	88	5	50	26	5	0	67	1.13
34833080--34833190	53	2.1	53	89	0	168	9	42	27	20	1.82
34857289--34857314	12	2.2	12	100	0	52	7	15	30	46	1.74
34857337--34857472	41	3.3	40	82	6	139	37	21	21	19	1.94
34857368--34857472	41	2.6	40	89	3	147	38	20	21	19	1.94
34857451--34857499	24	2.0	24	96	0	89	42	26	16	14	1.86
34857539--34857663	54	2.5	46	74	17	117	50	31	0	18	1.47
34858929--34858962	13	2.6	13	95	0	59	35	38	0	26	1.57
34858991--34859020	14	2.1	14	93	0	51	43	40	3	13	1.60
34859088--34859117	14	2.1	14	93	0	51	26	36	3	33	1.73
34861730--34861759	5	6.0	5	92	0	51	43	0	0	56	0.99
34863217--34863263	19	2.5	19	76	10	51	21	2	4	72	1.12
34863620--34863659	19	2.1	19	90	9	64	35	5	0	60	1.19
34870930--34870968	21	1.9	21	89	5	62	56	2	0	41	1.13
34870969--34871023	25	2.3	24	76	14	60	56	1	0	41	1.10
34871374--34871421	17	2.7	18	81	9	55	39	0	0	60	0.97
34871374--34871421	19	2.6	19	86	3	62	39	0	0	60	0.97
34874403--34874561	27	5.9	26	82	8	167	35	21	23	19	1.96
34874431--34874563	54	2.5	54	95	1	232	35	21	24	18	1.95
34874863--34875064	102	2.0	102	95	1	361	35	26	11	25	1.91
34875980--34876009	10	3.0	10	95	0	51	53	10	26	10	1.66
34876096--34876201	26	4.1	26	96	0	194	34	25	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34878410--34878522	41	2.7	42	84	1	147	18	23	18	38	1.93
34878409--34878522	21	5.5	21	69	2	77	18	23	18	39	1.92
34887695--34887754	29	2.0	30	87	3	86	36	6	25	31	1.82
34889349--34889479	39	3.3	40	80	7	158	28	26	20	24	1.99
35008099--35008162	19	3.2	19	65	26	51	18	15	34	31	1.93
35008098--35008203	41	2.4	46	89	10	159	20	16	31	31	1.95
35013063--35013190	53	2.4	54	77	21	139	24	32	21	21	1.98
35013063--35013193	51	2.5	53	74	24	127	24	32	21	21	1.98
35020609--35020687	27	3.2	27	60	29	66	26	29	20	24	1.99
35020585--35020709	47	2.7	47	98	1	243	28	29	20	22	1.98
35026817--35026872	9	6.2	9	85	0	76	55	23	3	17	1.58
35026817--35026866	18	2.8	18	93	0	91	56	26	2	16	1.51
35026820--35026892	27	2.7	27	82	0	74	52	23	4	20	1.64
35026952--35027023	34	2.1	34	84	0	90	44	13	6	34	1.71
35029334--35029519	67	2.8	67	80	8	175	32	16	29	22	1.95
35029358--35029541	67	2.8	64	78	7	192	30	16	29	23	1.96
35032583--35032642	32	1.9	32	82	3	77	33	11	8	46	1.70
35034087--35034176	44	2.0	44	95	0	162	50	31	6	12	1.66
35036691--35036775	35	2.4	35	82	0	107	42	15	12	29	1.84
35040139--35040297	43	3.7	43	76	10	146	35	23	14	27	1.93
35044398--35044453	26	2.2	25	75	12	60	44	12	19	23	1.84
35045592--35045656	22	3.0	21	77	20	62	16	15	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35049735--35049937	27	7.6	27	85	5	232	27	13	28	30	1.94
35049735--35049937	53	3.8	53	82	7	230	27	13	28	30	1.94
35057707--35057910	27	7.6	27	85	4	232	27	13	27	30	1.94
35061543--35061591	19	2.7	18	81	12	55	40	4	10	44	1.57
35068204--35068285	42	2.0	42	83	9	105	34	26	14	24	1.94
35077623--35077795	46	3.7	46	78	10	199	21	20	28	29	1.98
35077620--35077790	93	1.8	93	92	0	288	21	20	29	28	1.98
35082257--35082477	40	5.7	40	84	10	269	25	27	22	24	2.00
35082257--35082477	75	2.8	80	83	9	267	25	27	22	24	2.00
35090211--35090436	40	5.7	40	86	5	296	26	26	22	24	2.00
35093272--35093419	42	3.5	42	75	14	117	29	24	18	27	1.98
35101367--35101482	43	2.7	43	83	1	144	30	31	17	21	1.96
35108645--35108741	47	2.1	47	94	0	167	30	6	16	46	1.71
35121818--35121944	23	5.2	25	79	15	92	22	25	19	33	1.97
35121818--35121931	47	2.4	46	84	8	131	22	24	20	32	1.98
35127731--35127802	30	2.4	30	84	6	85	37	19	15	27	1.92
35131283--35131501	48	4.6	47	81	11	175	25	26	16	31	1.97
35131236--35131504	96	2.8	95	82	7	305	24	27	18	30	1.98
35131232--35131501	144	1.9	141	81	9	323	24	27	17	30	1.97
35134960--35135114	47	3.3	47	80	7	181	21	29	19	29	1.98
35134960--35135136	46	3.8	45	79	10	162	20	29	18	30	1.97
35134960--35135169	93	2.2	94	80	8	241	22	29	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35152523--35152554	9	3.8	9	84	16	50	31	0	0	68	0.90
35155297--35155329	17	2.0	17	88	5	50	12	3	3	81	0.91
35157586--35157630	6	7.5	6	90	7	65	15	2	0	82	0.77
35157586--35157640	17	3.1	17	86	5	65	18	3	0	78	0.90
35163552--35163581	11	2.7	11	89	0	51	56	10	0	33	1.32
35166511--35166682	46	3.7	46	78	13	199	28	28	21	21	1.99
35166516--35166686	93	1.8	93	93	0	297	28	29	21	21	1.98
35167106--35167165	30	2.0	30	90	0	93	30	25	8	36	1.85
35171434--35171604	39	4.3	39	84	6	202	25	21	28	25	1.99
35171381--35171604	79	2.8	79	81	7	222	25	20	28	25	1.99
35171461--35171637	79	2.2	80	82	4	200	25	21	28	24	1.99
35179268--35179445	40	4.6	38	82	12	175	24	21	28	26	1.99
35179268--35179445	77	2.3	80	81	10	199	24	21	28	26	1.99
35179346--35179495	40	3.8	38	80	8	122	24	22	28	24	1.99
35182674--35182825	43	3.6	43	80	11	154	32	28	17	21	1.96
35182674--35182828	44	3.6	44	74	15	135	32	27	17	22	1.96
35184603--35184642	19	2.1	19	86	9	55	52	10	7	30	1.62
35201166--35201190	3	8.3	3	100	0	50	32	36	0	32	1.58
35206274--35206460	55	3.5	53	77	7	171	35	16	24	23	1.95
35206283--35206483	108	1.8	110	85	4	282	34	16	24	24	1.95
35206721--35206751	16	1.9	16	93	0	53	41	0	22	35	1.54
35212023--35212074	27	2.0	26	84	3	68	32	19	28	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35216371--35216624	53	4.8	54	79	8	247	37	14	25	22	1.93
35216378--35216578	108	1.9	109	86	5	291	34	15	25	24	1.94
35216817--35216847	16	1.9	16	93	0	53	41	0	22	35	1.54
35221660--35221749	35	2.4	38	75	14	98	34	17	20	27	1.95
35225315--35225454	48	2.9	48	81	0	172	32	25	16	25	1.96
35227250--35227282	15	2.2	15	100	0	66	36	18	6	39	1.75
35227250--35227287	15	2.6	15	91	4	51	42	18	5	34	1.73
35231678--35231908	40	5.8	40	92	0	336	24	28	21	25	1.99
35240220--35240449	40	5.8	40	92	1	336	24	28	21	25	1.99
35244856--35245120	40	6.6	40	80	8	227	26	22	25	25	2.00
35252394--35252658	40	6.6	40	83	6	261	26	23	26	24	2.00
35272437--35272490	25	2.2	25	93	0	90	38	16	22	22	1.93
35273936--35273987	24	2.2	24	89	0	77	53	7	3	34	1.48
35277634--35277954	49	6.7	47	76	8	220	24	26	19	29	1.98
35277682--35277954	49	5.7	48	77	6	221	23	26	19	30	1.98
35277634--35277954	94	3.3	94	78	6	304	24	26	19	29	1.98
35277634--35277963	48	6.9	46	74	10	182	25	26	18	29	1.98
35279689--35279713	13	1.9	13	100	0	50	60	0	0	40	0.97
35301677--35301704	5	5.6	5	100	0	56	21	0	0	78	0.75
35301890--35301955	34	1.9	34	93	0	114	39	21	3	36	1.69
35302021--35302074	21	2.6	20	71	8	54	29	25	3	40	1.73
35304689--35304753	25	2.6	25	97	0	121	38	12	20	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35306648--35306737	42	2.1	42	81	4	101	27	28	16	26	1.97
35306732--35306900	48	3.5	46	81	3	140	25	28	19	26	1.99
35311781--35311949	46	3.6	47	82	7	177	27	17	30	24	1.97
35319067--35319282	46	4.6	46	80	7	197	28	20	28	23	1.99
35322760--35322880	47	2.6	47	89	0	179	33	6	30	29	1.83
35331082--35331367	48	6.0	48	79	8	287	28	18	28	24	1.98
35331082--35331364	96	3.0	96	84	3	322	28	18	28	24	1.98
35332377--35332407	11	2.8	11	100	0	62	6	25	38	29	1.81
35332870--35332899	15	2.0	15	100	0	60	46	20	6	26	1.75
35334718--35334902	40	4.7	40	80	7	191	24	23	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311