genome.fa.s12.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  144  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48762288--48762326	18	2.2	18	86	4	53	56	0	0	43	0.99
48763441--48763561	57	2.1	59	84	6	158	28	18	4	48	1.68
48771892--48771983	28	3.3	28	93	4	152	34	28	7	29	1.85
48772089--48772151	28	2.2	29	88	8	94	22	22	23	31	1.98
48779484--48779515	8	4.0	8	91	0	55	46	25	25	3	1.67
48779748--48779832	27	3.1	27	88	6	127	32	27	9	30	1.88
48779744--48779835	28	3.3	28	89	8	136	33	27	8	30	1.87
48779941--48780003	28	2.2	28	83	8	74	23	20	22	33	1.97
48789567--48789825	68	3.9	64	74	15	224	30	15	28	24	1.96
48814667--48814695	14	2.0	15	93	6	51	37	0	6	55	1.27
48821784--48821815	11	2.9	11	95	0	55	34	9	9	46	1.68
48822850--48823128	48	5.8	48	83	0	306	27	17	28	25	1.98
48822850--48823128	144	1.9	144	90	0	441	27	17	28	25	1.98
48832377--48832546	46	3.7	46	77	13	186	22	20	28	28	1.98
48832374--48832544	93	1.8	93	89	0	270	22	19	29	28	1.98
48839489--48839660	47	3.7	47	79	13	180	22	20	28	29	1.98
48844522--48844568	4	11.5	4	88	2	67	70	2	0	27	0.99
48844835--48844864	11	2.7	11	89	0	51	56	6	6	30	1.51
48846316--48846790	179	2.7	178	86	2	625	30	17	19	32	1.95
48846316--48846790	177	2.7	177	86	0	671	30	17	19	32	1.95
48847467--48847706	46	5.2	46	84	5	281	24	26	16	32	1.96
48848107--48848209	53	1.9	53	88	0	152	58	5	14	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48854513--48854542	11	2.7	11	89	0	51	56	6	6	30	1.51
48858613--48858799	40	4.7	40	89	2	268	33	27	20	18	1.96
48860261--48860290	15	1.9	16	93	6	53	33	20	0	46	1.51
48864986--48865207	111	2.0	111	85	0	300	44	17	21	17	1.87
48868221--48868287	29	2.3	29	81	2	80	52	10	4	32	1.56
48877032--48877216	40	4.6	40	89	4	259	27	27	22	23	2.00
48877031--48877220	80	2.4	80	88	6	287	26	26	22	24	2.00
48881969--48882175	53	3.8	53	74	6	193	37	18	24	19	1.94
48889149--48889188	20	1.9	22	90	10	66	22	10	10	57	1.61
48889311--48889443	67	2.0	67	89	0	203	30	31	16	21	1.95
48889415--48889550	58	2.4	54	83	7	157	31	25	17	25	1.97
48893028--48893132	53	2.0	53	86	0	147	38	19	22	20	1.94
48894876--48894999	47	2.6	48	81	10	139	24	28	18	29	1.98
48902637--48902840	40	5.1	40	92	1	304	25	28	24	22	1.99
48907359--48907424	33	2.0	33	100	0	132	51	3	12	33	1.54
48908695--48908741	8	6.0	8	85	9	62	31	0	2	65	1.04
48916885--48916942	11	5.1	11	72	6	53	46	3	1	48	1.29
48917074--48917322	124	2.0	124	100	0	498	45	17	13	23	1.84
48917455--48917522	24	2.6	25	81	9	75	45	0	1	52	1.09
48917464--48917522	18	3.5	16	80	15	57	45	0	0	54	0.99
48919438--48919486	26	1.9	26	91	4	82	20	0	8	71	1.11
48923807--48923834	13	2.2	13	100	0	56	21	14	32	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48926185--48926244	25	2.4	25	88	2	95	38	5	10	46	1.59
48926488--48926531	23	1.9	23	85	0	61	45	18	11	25	1.82
48928234--48928259	7	3.7	7	100	0	52	73	0	0	26	0.84
48929140--48929212	31	2.4	31	90	2	112	46	6	19	27	1.75
48931632--48931680	23	2.1	23	88	0	71	20	24	24	30	1.98
48935301--48935567	48	5.6	48	79	4	261	26	17	30	25	1.97
48939237--48939282	19	2.4	19	100	0	92	34	17	15	32	1.91
48941884--48942173	120	2.4	120	84	4	356	24	21	26	27	1.99
48941884--48942173	40	7.3	40	86	2	320	24	21	26	27	1.99
48950139--48950392	40	6.3	41	87	1	295	25	21	25	27	1.99
48950152--48950428	120	2.3	120	83	4	339	24	21	25	27	1.99
48959913--48960039	55	2.3	55	83	5	166	18	29	25	25	1.98
48975011--48975115	29	3.7	29	91	3	151	31	33	13	21	1.92
48975124--48975316	40	4.8	40	90	1	291	29	27	21	21	1.99
48986750--48986939	48	4.0	47	81	2	191	25	18	30	25	1.98
48995155--48995229	25	3.0	24	88	3	105	32	16	20	32	1.94
48995524--48995557	17	2.0	17	88	0	50	29	2	8	58	1.43
48998146--48998321	90	2.0	90	82	0	217	27	27	22	22	1.99
49002509--49002558	27	1.9	26	84	8	66	50	10	6	34	1.60
49038165--49038269	39	2.7	39	88	2	140	24	23	26	24	2.00
49053371--49053457	28	3.1	28	88	6	122	26	29	14	28	1.95
49053676--49053728	16	3.3	16	86	0	61	7	20	20	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49054885--49054916	16	2.0	16	100	0	64	12	6	31	50	1.65
49055294--49055335	21	1.9	22	85	9	59	45	4	9	40	1.58
49058370--49058490	39	3.1	39	79	2	127	45	22	4	27	1.73
49060218--49060387	46	3.7	46	77	7	191	29	30	19	21	1.97
49060226--49060397	93	1.8	93	89	0	272	28	30	19	21	1.98
49062779--49062867	30	3.0	30	80	8	101	57	15	16	10	1.65
49062779--49062858	15	5.4	15	80	7	92	58	13	17	10	1.62
49062790--49062867	15	5.2	15	78	9	79	56	15	16	11	1.67
49069876--49070524	326	2.0	326	95	0	1181	32	21	20	25	1.98
49071489--49071687	27	7.4	27	85	0	245	36	18	19	25	1.95
49071489--49071687	81	2.5	81	87	0	272	36	18	19	25	1.95
49072405--49072468	33	2.0	32	84	3	83	20	25	20	34	1.96
49073351--49073548	27	7.3	27	72	8	125	32	13	17	37	1.88
49073365--49073557	54	3.6	53	75	8	158	32	11	19	36	1.88
49073396--49073556	81	2.0	81	83	7	202	32	11	19	36	1.88
49073395--49073557	27	6.0	27	76	9	145	31	11	19	36	1.88
49078129--49078210	43	1.9	42	82	7	103	23	18	26	31	1.97
49081038--49081207	48	3.5	48	95	0	295	32	9	29	28	1.88
49081377--49081479	37	2.8	37	96	0	188	23	20	32	24	1.98
49082754--49083030	40	6.9	40	93	1	414	21	22	29	26	1.99
49083036--49083168	29	4.7	29	77	11	123	21	15	30	33	1.93
49086693--49086862	48	3.5	48	95	0	295	32	9	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49087032--49087134	37	2.8	37	96	0	188	23	20	32	24	1.98
49092221--49092299	37	2.1	37	90	0	122	25	31	18	24	1.98
49092417--49092735	47	6.7	47	97	1	557	30	30	8	31	1.87
49097123--49097162	20	2.0	20	100	0	80	20	30	20	30	1.97
49099655--49099692	14	2.6	15	84	16	53	2	39	0	57	1.12
49101739--49101908	46	3.7	46	77	13	188	20	19	30	30	1.97
49101729--49101900	93	1.8	93	92	2	292	20	20	30	28	1.97
49110245--49110285	21	2.0	21	85	9	57	2	31	2	63	1.20
49119453--49119484	3	10.7	3	100	0	64	31	0	0	68	0.90
49123966--49124157	68	2.9	64	76	12	199	27	29	15	28	1.96
49154739--49155025	40	7.2	39	85	5	287	23	22	27	25	2.00
49172719--49172832	57	2.0	57	96	0	210	32	9	7	50	1.62
49185752--49185828	38	2.0	38	94	0	136	29	14	24	31	1.94
49188281--49188359	31	2.5	31	93	0	140	26	24	18	30	1.98
49188577--49188699	26	4.8	26	90	1	187	27	23	22	26	2.00
49188577--49188699	52	2.4	51	95	2	221	27	23	22	26	2.00
49189472--49189555	27	3.1	27	87	3	116	21	25	21	32	1.98
49189621--49189750	56	2.4	54	81	2	134	30	10	19	40	1.84
49189710--49189908	81	2.5	80	89	0	281	31	8	19	40	1.82
49189771--49189912	53	2.6	54	84	7	175	30	7	19	42	1.78
49189594--49189953	27	13.3	27	74	6	210	31	9	19	39	1.83
49189931--49190061	27	4.9	27	87	0	172	40	7	21	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49189890--49190099	81	2.6	81	73	0	204	35	7	20	36	1.82
49222939--49223103	40	4.1	40	82	6	174	25	27	21	25	2.00
49230852--49230996	40	3.6	41	82	8	167	24	27	22	24	2.00
49234812--49234840	10	2.9	10	100	0	58	20	27	20	31	1.98
49238475--49238732	47	5.5	46	75	10	186	29	18	28	22	1.98
49254441--49254495	23	2.4	23	87	0	83	41	18	18	21	1.90
49257992--49258194	47	4.3	47	93	0	343	33	11	27	27	1.92
49259752--49259825	29	2.6	29	86	4	96	27	16	31	25	1.96
49266637--49266787	28	5.4	28	94	1	241	27	11	27	33	1.92
49270440--49270513	29	2.6	29	86	4	96	27	16	31	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311