genome.fa.s12.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  186  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63994176--63994358	79	2.3	81	83	9	225	25	27	22	24	2.00
63994155--63994358	40	5.1	40	81	8	229	25	27	22	25	2.00
63997102--63997169	25	2.7	25	81	4	75	29	22	23	25	1.99
64005035--64005190	43	3.6	43	85	0	204	29	23	18	28	1.98
64006010--64006038	13	2.1	14	93	6	51	55	10	0	34	1.34
64009562--64009644	30	2.7	31	83	3	98	22	22	19	34	1.96
64009865--64009935	25	2.8	25	86	2	97	29	21	22	26	1.99
64017490--64017572	30	2.7	31	85	3	107	22	24	20	32	1.98
64017785--64017863	25	3.2	24	82	8	88	29	21	20	29	1.98
64017793--64017863	25	2.8	25	85	6	90	29	22	22	25	1.99
64021215--64021278	9	7.6	9	72	13	55	32	1	14	51	1.51
64021209--64021242	15	2.1	17	89	10	54	35	0	8	55	1.31
64021215--64021282	24	2.7	26	93	6	113	33	1	13	51	1.50
64022587--64022655	33	2.1	33	100	0	138	24	11	11	52	1.71
64024600--64024641	14	2.9	14	82	13	50	30	0	19	50	1.48
64024616--64024642	14	1.9	14	100	0	54	33	0	14	51	1.43
64024646--64024700	22	2.5	23	77	11	62	21	3	29	45	1.69
64024687--64024729	7	6.3	7	83	5	61	16	0	41	41	1.48
64025370--64025433	32	2.0	33	87	6	96	40	29	17	12	1.86
64025632--64025734	32	3.2	32	70	8	75	33	19	19	28	1.96
64026214--64026356	27	5.3	27	76	5	110	31	11	18	38	1.86
64026255--64026384	54	2.4	54	83	2	145	34	9	18	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64026281--64026387	27	4.0	27	81	7	119	35	9	17	37	1.82
64026227--64026387	81	2.0	81	80	7	184	33	9	18	37	1.84
64029180--64029378	41	4.8	42	79	5	201	29	19	16	34	1.94
64029177--64029378	82	2.5	82	85	4	264	29	19	17	34	1.94
64037276--64037375	44	2.3	42	80	8	103	28	19	19	34	1.95
64037281--64037413	42	3.1	44	76	9	132	28	18	19	33	1.95
64037281--64037437	43	3.7	43	72	10	133	26	19	22	32	1.97
64041418--64041618	53	3.8	53	75	10	173	37	16	24	21	1.94
64045555--64045590	17	2.1	17	100	0	72	50	16	11	22	1.77
64046216--64046279	23	2.8	23	72	9	58	43	0	1	54	1.09
64046260--64046292	8	4.0	8	92	7	57	60	0	0	39	0.97
64049965--64050012	20	2.4	20	100	0	96	12	35	35	16	1.87
64057980--64058168	40	4.7	40	92	2	308	25	26	22	24	2.00
64066888--64066920	13	2.5	13	100	0	66	42	33	18	6	1.75
64067781--64067910	48	2.8	46	78	6	136	25	28	16	30	1.96
64069218--64069252	17	2.0	18	88	5	54	48	0	37	14	1.44
64081935--64082044	42	2.6	43	77	12	111	24	19	22	33	1.97
64086238--64086375	69	2.0	68	92	1	231	45	15	7	31	1.73
64094979--64095041	30	2.1	30	93	0	108	25	3	12	58	1.49
64095092--64095125	12	2.8	12	90	0	50	67	0	0	32	0.91
64095690--64095752	30	2.1	30	93	0	108	25	3	12	58	1.49
64095803--64095836	12	2.8	12	90	0	50	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64094652--64096076	711	2.0	711	99	0	2841	27	16	19	35	1.94
64101319--64101370	21	2.5	21	75	6	52	25	28	26	19	1.98
64102357--64102394	14	2.9	13	81	11	51	57	10	13	18	1.63
64105798--64105969	93	1.8	93	93	2	301	29	29	20	20	1.98
64105791--64105966	46	3.8	46	78	14	200	30	29	20	19	1.97
64124509--64124551	21	2.0	23	81	9	54	39	11	16	32	1.84
64128965--64129136	67	2.7	63	78	9	186	27	16	30	25	1.97
64132855--64132879	12	2.1	12	100	0	50	48	16	8	28	1.74
64135916--64135960	20	2.2	20	88	0	63	35	11	2	51	1.50
64139134--64139179	24	1.9	24	86	8	67	23	30	2	43	1.66
64143596--64143622	14	1.9	14	100	0	54	51	14	3	29	1.60
64148448--64148611	46	3.5	45	82	7	170	23	29	19	28	1.98
64148443--64148662	47	4.7	46	74	15	159	23	29	20	27	1.98
64157972--64158011	20	2.0	20	85	5	53	52	0	15	32	1.43
64162277--64162330	20	2.6	21	85	11	76	50	16	12	20	1.78
64165197--64165259	30	2.1	30	84	0	81	19	25	25	30	1.98
64171140--64171195	23	2.4	23	100	0	112	26	0	33	39	1.57
64177481--64177514	8	4.1	8	96	3	59	14	0	23	61	1.33
64178871--64178928	30	2.0	29	86	3	80	24	31	32	12	1.91
64179360--64179431	30	2.4	30	95	0	126	18	37	26	18	1.93
64180366--64180504	50	2.8	50	84	6	160	25	25	19	30	1.98
64183405--64183491	27	3.2	27	85	3	104	36	18	26	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64192956--64193016	30	2.0	30	84	6	79	31	24	6	37	1.81
64193753--64193829	38	2.0	38	97	0	145	32	6	12	48	1.67
64203230--64203307	24	3.0	25	77	17	88	39	15	20	24	1.91
64203228--64203319	28	3.4	28	82	10	111	38	14	21	26	1.91
64205453--64205512	29	2.1	29	100	0	120	41	6	10	41	1.65
64206838--64206872	5	6.8	5	87	6	52	0	14	0	85	0.59
64206837--64206873	11	3.5	11	88	7	58	0	13	0	86	0.57
64207713--64207751	17	2.3	17	86	8	53	82	2	2	12	0.89
64207748--64207820	8	8.4	8	79	18	58	60	1	1	36	1.14
64207764--64207881	10	12.8	9	72	18	57	53	0	0	44	1.12
64207748--64207820	28	2.7	27	85	10	96	60	1	1	36	1.14
64207756--64207800	19	2.5	17	89	10	63	55	2	0	42	1.12
64208080--64208138	28	2.1	28	87	0	82	42	1	0	55	1.09
64208180--64208238	11	5.8	10	74	16	50	32	1	1	64	1.13
64208180--64208238	31	1.9	31	89	0	91	32	1	1	64	1.13
64210645--64210777	43	3.1	41	80	10	135	31	27	18	22	1.97
64210676--64210778	41	2.4	43	87	4	156	34	26	16	22	1.95
64220899--64220932	12	2.8	12	86	0	50	44	0	0	55	0.99
64222566--64222594	10	2.9	10	100	0	58	51	6	0	41	1.28
64224035--64224144	55	2.0	55	98	0	211	37	18	15	29	1.91
64228557--64228708	27	5.6	27	93	3	241	30	28	13	26	1.94
64228557--64228708	55	2.8	55	94	0	259	30	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64236986--64237100	43	2.7	43	81	4	126	26	20	25	27	1.99
64240257--64240334	29	2.7	28	84	11	104	25	15	30	28	1.96
64240287--64240613	173	1.9	174	93	0	566	29	14	24	31	1.94
64250504--64251113	148	4.2	143	85	11	793	26	18	19	35	1.95
64251158--64251304	76	2.0	69	85	14	192	36	17	15	30	1.91
64251302--64251600	74	3.8	76	77	13	272	32	17	18	32	1.94
64251302--64251600	75	3.8	75	77	16	270	32	17	18	32	1.94
64252094--64252152	29	2.0	29	87	9	84	23	10	28	37	1.88
64257589--64257900	38	7.6	38	71	22	220	31	24	14	29	1.94
64257588--64257900	84	3.7	85	94	1	549	31	24	14	29	1.94
64259475--64259501	11	2.5	11	100	0	54	44	18	7	29	1.77
64260607--64260648	15	2.8	15	88	0	66	52	14	16	16	1.75
64262046--64262186	27	5.3	27	81	13	175	34	21	24	18	1.96
64262046--64262185	54	2.6	54	92	3	230	34	22	25	18	1.96
64262575--64262604	8	3.8	8	90	0	51	3	26	26	43	1.70
64266922--64267423	38	11.7	41	71	19	332	31	23	14	29	1.95
64266922--64267423	85	5.8	85	81	11	572	31	23	14	29	1.95
64267133--64267396	48	5.8	48	83	10	354	30	23	15	30	1.95
64267045--64267423	133	2.9	133	94	0	634	31	23	15	29	1.95
64270122--64270163	15	2.8	15	92	0	66	54	14	14	16	1.71
64272828--64273062	38	5.6	44	74	16	182	31	23	13	30	1.93
64272823--64273063	85	2.8	85	89	0	356	31	23	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64278481--64278553	38	2.0	36	82	15	89	45	19	12	23	1.84
64279413--64279456	21	2.1	21	83	8	54	40	6	11	40	1.68
64280003--64280110	43	2.5	42	77	5	110	27	12	26	32	1.93
64286418--64286449	13	2.5	13	94	0	55	31	34	28	6	1.82
64296333--64296376	21	2.1	21	84	16	56	34	9	20	36	1.84
64296985--64297106	46	2.6	46	78	8	131	22	31	17	28	1.97
64304491--64304757	46	5.7	48	73	12	164	22	29	19	27	1.98
64307708--64307866	39	4.1	38	89	1	210	27	24	20	27	1.99
64307716--64307867	78	1.9	78	90	0	241	27	24	19	28	1.99
64317445--64317517	25	3.2	24	64	28	61	27	28	23	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311