genome.fa.s12.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  157  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53488871--53488899	13	2.2	13	100	0	58	31	0	13	55	1.39
53491927--53491964	7	5.3	7	90	6	58	13	2	2	81	0.90
53491927--53491966	14	2.7	15	88	7	64	12	5	2	80	0.98
53492946--53493295	174	2.0	174	92	0	583	27	24	19	28	1.99
53495923--53496068	37	3.9	37	87	1	177	26	31	18	23	1.97
53495926--53496068	74	1.9	74	86	0	205	24	32	18	24	1.97
53496273--53496560	47	6.1	47	87	0	396	27	28	11	32	1.91
53496366--53496442	22	3.4	22	69	22	68	25	28	14	31	1.95
53496273--53496561	141	2.0	141	91	0	470	27	28	11	32	1.91
53509108--53509136	13	2.2	13	100	0	58	31	0	13	55	1.39
53513994--53514037	19	2.4	19	85	7	56	50	0	9	40	1.34
53527741--53527788	24	2.0	24	100	0	96	37	4	12	45	1.61
53528011--53528071	29	2.1	29	81	6	70	42	0	24	32	1.55
53529716--53529740	8	3.1	8	100	0	50	16	0	24	60	1.36
53530216--53530314	43	2.3	43	78	3	110	31	17	22	29	1.96
53532990--53533105	28	4.2	28	84	2	155	18	25	19	36	1.94
53538402--53538592	47	4.1	47	91	0	274	32	9	28	28	1.89
53538445--53538523	25	3.3	25	65	22	69	32	10	27	29	1.89
53538419--53538638	94	2.3	94	82	3	246	33	10	29	27	1.90
53541711--53541839	46	2.8	46	89	0	195	20	21	28	29	1.98
53544650--53544684	15	2.3	15	90	0	61	14	14	11	60	1.60
53547044--53547171	46	2.8	46	85	0	175	20	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53548937--53548988	8	6.6	8	91	2	70	51	25	15	7	1.69
53549198--53549312	29	4.0	28	84	2	122	27	14	28	28	1.95
53552143--53552243	25	4.1	24	85	3	112	27	21	19	30	1.98
53552291--53552338	20	2.3	21	89	3	71	33	18	10	37	1.85
53575878--53575960	27	3.1	27	78	0	76	24	19	21	34	1.96
53575972--53576093	27	4.6	27	87	9	160	26	13	19	40	1.88
53585400--53585526	43	3.0	42	80	3	146	25	17	24	33	1.96
53586299--53586434	40	3.4	40	88	6	188	25	22	27	24	2.00
53586299--53586458	79	2.0	78	80	5	180	26	21	27	23	1.99
53590847--53591116	47	5.9	47	87	7	387	33	12	28	25	1.92
53591526--53591661	40	3.5	40	89	7	192	25	22	27	25	1.99
53591521--53591694	80	2.2	77	79	10	176	25	22	28	23	1.99
53599402--53599626	40	5.7	40	86	5	296	24	22	28	25	2.00
53599402--53599659	119	2.2	119	81	6	283	25	21	27	24	1.99
53609858--53609941	43	2.0	43	88	4	125	28	27	17	26	1.98
53612856--53612936	33	2.4	33	83	6	83	24	22	25	27	2.00
53615168--53615250	30	2.7	30	78	10	89	32	16	25	25	1.96
53615168--53615245	31	2.6	30	81	2	93	32	17	25	24	1.97
53618140--53618266	43	3.0	41	75	13	103	32	28	14	24	1.95
53618850--53618878	15	1.9	15	100	0	58	62	13	0	24	1.32
53624093--53624137	22	2.0	24	82	8	58	33	6	26	33	1.83
53624102--53624149	24	2.0	23	84	11	62	33	10	25	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53633852--53634089	49	4.8	49	85	3	289	29	26	17	26	1.98
53636238--53636399	43	3.8	42	77	10	132	24	17	26	31	1.97
53641479--53641685	53	3.8	54	77	1	200	37	19	23	19	1.94
53643120--53643230	27	4.1	27	81	5	127	36	20	24	18	1.94
53651170--53651343	27	6.4	27	84	4	197	29	27	14	27	1.96
53651187--53651342	82	1.9	81	88	3	233	29	28	15	26	1.96
53654254--53654508	55	4.8	54	77	7	220	21	24	17	36	1.95
53654299--53654501	108	1.9	110	83	4	268	23	24	18	33	1.97
53659026--53659081	11	5.5	11	71	16	57	35	12	19	32	1.89
53659015--53659081	20	3.3	20	93	0	116	34	11	20	32	1.90
53659395--53659456	31	2.0	31	93	0	106	35	16	24	24	1.95
53667063--53667119	11	5.5	11	68	16	50	36	10	17	35	1.84
53667053--53667119	20	3.3	20	87	0	98	35	10	19	34	1.86
53667168--53667268	24	4.2	24	89	3	150	32	18	18	29	1.95
53667168--53667268	49	2.1	49	88	3	152	32	18	18	29	1.95
53668786--53668856	25	2.8	25	93	2	115	25	25	22	26	2.00
53668785--53668869	25	3.4	24	87	7	109	28	23	22	25	1.99
53669077--53669159	30	2.7	31	83	7	100	33	21	24	20	1.97
53674303--53674526	40	5.6	40	79	8	217	26	27	20	25	1.99
53674303--53674524	79	2.8	79	80	6	207	26	27	20	25	1.99
53681537--53681709	40	4.3	40	91	2	278	23	21	29	25	1.99
53689694--53689855	40	4.1	40	92	0	261	22	23	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53690097--53690140	22	2.0	22	82	8	54	31	11	13	43	1.80
53691356--53691426	25	2.8	25	84	2	88	28	23	19	28	1.99
53691647--53691729	30	2.7	31	88	3	125	31	19	26	22	1.98
53697057--53697321	46	5.7	46	87	1	334	20	25	13	40	1.90
53700509--53700539	16	1.9	16	93	0	53	35	22	0	41	1.54
53700506--53700545	20	2.0	20	85	0	53	37	22	0	40	1.54
53700755--53700913	53	3.0	53	79	5	167	24	25	15	35	1.94
53700708--53700962	55	4.8	53	76	8	225	22	24	16	36	1.94
53705082--53705288	53	3.8	54	78	3	220	36	18	23	21	1.95
53709670--53709782	29	4.0	29	85	6	142	28	30	15	26	1.96
53709659--53709769	58	1.9	57	87	1	159	27	30	15	26	1.96
53711133--53711166	16	2.1	16	100	0	68	17	5	29	47	1.71
53712587--53712676	27	3.2	27	76	7	83	33	21	23	22	1.97
53712782--53712846	28	2.3	28	91	0	103	30	9	27	32	1.88
53712943--53712996	19	2.8	19	100	0	108	20	33	14	31	1.93
53724670--53724792	40	3.1	40	91	0	210	26	29	22	21	1.99
53731060--53731102	17	2.5	17	96	0	77	32	16	13	37	1.88
53734627--53734701	6	12.3	6	75	13	73	49	14	17	18	1.80
53735064--53735196	27	5.0	27	87	4	171	24	18	19	36	1.94
53735162--53735285	54	2.3	54	73	1	124	31	11	20	36	1.88
53735226--53735286	27	2.3	27	83	11	72	31	11	19	37	1.87
53740014--53740246	49	4.7	50	81	2	272	25	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53740017--53740246	100	2.3	99	84	3	284	25	17	26	30	1.97
53740017--53740259	101	2.4	100	81	7	273	26	17	25	30	1.98
53742124--53742239	27	4.3	26	82	5	115	36	19	22	21	1.95
53742124--53742238	54	2.1	53	83	3	140	36	19	22	21	1.95
53742391--53742454	27	2.4	28	76	7	69	35	25	20	18	1.95
53742434--53742568	27	5.0	27	87	0	153	23	19	20	37	1.95
53742435--53742568	54	2.5	54	82	0	169	23	19	19	37	1.94
53742560--53742664	27	3.9	26	72	7	84	31	7	23	37	1.83
53749490--53749559	27	2.6	27	88	0	104	38	24	8	28	1.85
53749525--53749613	27	3.3	27	76	3	81	39	20	13	26	1.90
53750053--53750202	32	4.8	32	83	0	178	24	18	20	36	1.95
53754752--53755061	47	6.6	47	91	1	431	28	29	7	34	1.85
53758411--53758598	40	4.7	40	88	0	261	25	28	22	23	2.00
53761153--53761381	47	4.9	47	90	0	341	27	29	8	34	1.87
53763516--53763611	27	3.6	27	84	0	129	41	21	8	28	1.82
53764064--53764182	31	3.8	32	86	3	161	23	17	19	39	1.92
53764195--53764247	26	2.0	26	85	0	70	13	18	22	45	1.84
53768369--53768410	20	2.1	20	86	0	57	80	0	11	7	0.88
53771447--53771492	17	2.7	18	76	10	51	43	17	15	23	1.87
53772252--53772329	32	2.5	32	91	2	122	42	10	12	34	1.77
53776544--53776619	28	2.7	28	95	0	134	52	15	6	25	1.67
53776571--53776660	37	2.4	38	87	5	139	50	16	5	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53776918--53776963	23	2.0	23	95	0	83	28	21	19	30	1.98
53778172--53778258	27	3.3	26	80	4	102	35	21	22	19	1.96
53778473--53778540	27	2.5	27	87	0	91	26	19	17	36	1.94
53781818--53781947	66	1.9	70	82	7	169	35	16	29	19	1.93
53784433--53784612	40	4.5	40	81	10	174	26	27	22	23	1.99
53784433--53784612	79	2.3	80	80	8	190	26	27	22	23	1.99
53791968--53792147	80	2.3	80	83	10	210	27	27	20	23	1.99
53791965--53792147	40	4.6	40	81	8	187	28	27	20	24	1.99
53796883--53797063	40	4.5	40	82	8	183	25	27	23	24	2.00
53799072--53799186	27	4.3	27	91	5	162	35	22	23	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311