genome.fa.s12.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  288  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93906763--93906817	12	4.0	13	75	25	51	50	1	0	47	1.11
93906783--93906839	18	2.9	19	74	23	55	61	0	0	38	0.96
93906800--93906861	31	1.9	33	87	12	94	61	1	0	37	1.06
93906884--93906939	24	2.3	24	84	9	69	57	1	0	41	1.09
93907045--93907080	18	1.9	18	94	5	63	58	0	0	41	0.98
93907031--93907097	23	3.1	21	77	20	68	56	0	0	43	0.99
93907045--93907128	21	4.6	19	71	25	67	60	0	1	38	1.04
93907045--93907102	20	3.0	21	85	9	70	62	0	0	37	0.96
93907030--93907102	20	3.6	20	77	15	69	58	0	0	41	0.98
93907066--93907172	33	3.2	33	79	14	128	59	0	0	38	1.10
93907126--93907185	22	2.5	24	81	7	79	53	5	0	41	1.23
93907216--93907268	20	2.7	19	82	8	70	75	3	3	16	1.10
93907475--93907503	14	2.1	14	100	0	58	27	20	27	24	1.99
93911060--93911112	13	4.4	13	70	18	51	37	47	1	13	1.54
93911054--93911100	22	2.1	22	88	0	67	34	51	2	12	1.52
93911060--93911128	35	2.0	35	85	5	95	34	49	1	14	1.53
93911872--93911904	16	2.1	16	94	0	57	21	21	6	51	1.69
93911904--93912103	3	67.3	3	66	15	67	32	8	2	57	1.41
93911916--93911947	13	2.6	13	90	9	50	25	6	3	65	1.31
93912071--93912135	22	2.9	23	76	15	73	24	4	6	64	1.36
93912355--93912411	25	2.3	23	80	14	62	17	5	14	63	1.48
93919273--93919305	17	2.0	17	88	5	50	33	9	0	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93919592--93920025	46	10.0	46	81	12	513	22	24	15	37	1.93
93919774--93920011	38	5.8	38	81	14	296	23	25	16	35	1.95
93919725--93920025	84	3.6	84	96	0	557	23	24	15	35	1.94
93919636--93920025	168	2.3	172	90	3	608	23	24	15	36	1.93
93923019--93923485	206	2.3	206	94	0	819	31	19	22	27	1.98
93923573--93923669	45	2.2	46	86	5	144	29	14	30	24	1.95
93923981--93924014	13	2.6	13	95	0	59	38	50	0	11	1.39
93923994--93924049	22	2.5	22	80	5	69	37	50	0	12	1.41
93924415--93924456	19	2.3	18	87	4	57	26	2	2	69	1.13
93924441--93924522	33	2.3	38	83	12	102	34	14	0	51	1.43
93924773--93924829	25	2.3	23	82	8	69	19	5	12	63	1.47
93926924--93926955	2	16.0	2	100	0	64	0	50	0	50	1.00
93927683--93927745	18	3.0	23	74	21	59	52	0	1	46	1.10
93927712--93927746	18	1.9	18	100	0	70	60	0	0	40	0.97
93930196--93930226	2	16.0	2	93	6	55	51	0	0	48	1.00
93930273--93930359	26	3.2	26	71	9	84	29	1	9	59	1.36
93930658--93930714	15	3.7	15	80	2	60	28	8	1	61	1.36
93940698--93940743	24	1.9	24	81	0	56	52	4	0	43	1.21
93941750--93942081	41	8.1	39	84	7	227	35	22	21	20	1.96
93941821--93942081	41	6.4	41	92	0	398	34	23	21	20	1.97
93942479--93942530	25	2.1	25	92	0	86	26	7	21	44	1.79
93942827--93942868	22	1.9	22	90	0	66	19	4	33	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93944611--93944655	21	2.1	21	100	0	90	24	17	57	0	1.40
93944970--93945110	71	2.0	71	97	0	264	30	20	23	25	1.98
93945038--93945153	43	2.6	42	77	8	133	31	19	22	26	1.98
93945998--93946027	5	5.8	5	92	7	51	3	56	40	0	1.16
93946056--93946134	25	3.5	24	70	16	60	69	5	1	24	1.16
93946067--93946131	20	2.9	23	84	11	73	66	6	1	26	1.24
93946217--93946245	12	2.5	12	94	5	51	58	6	6	27	1.50
93946315--93946339	12	2.1	12	100	0	50	76	0	0	24	0.80
93947879--93947973	21	4.7	21	83	3	115	13	22	20	44	1.86
93947843--93947955	42	2.7	42	87	0	145	14	22	15	47	1.81
93949362--93949393	10	3.1	11	91	8	50	6	9	0	84	0.78
93950048--93950076	13	2.1	14	93	6	51	51	0	3	44	1.18
93951066--93951107	19	2.2	19	83	8	50	33	4	2	59	1.31
93953556--93953595	7	5.6	7	82	5	53	67	0	10	22	1.20
93953638--93953692	28	1.9	29	85	3	76	29	1	1	67	1.11
93954204--93954251	19	2.5	20	96	3	89	77	18	0	4	0.93
93954221--93954276	25	2.2	26	93	3	96	75	17	1	5	1.09
93954221--93954276	26	2.2	25	93	6	96	75	17	1	5	1.09
93965051--93965226	71	2.5	70	86	5	223	29	14	23	32	1.94
93965254--93965420	72	2.3	73	87	3	230	25	14	27	31	1.95
93965051--93965578	199	2.7	193	85	5	666	26	15	23	34	1.95
93965920--93966060	72	2.0	72	100	0	282	32	16	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93966014--93966109	49	2.0	49	97	0	183	30	16	20	32	1.95
93965942--93966181	121	2.0	121	95	0	435	31	16	18	33	1.93
93966063--93966792	72	9.2	77	77	14	467	31	16	17	34	1.93
93966397--93966423	14	1.9	14	100	0	54	14	14	7	62	1.51
93966398--93966431	14	2.4	14	90	0	50	17	20	5	55	1.62
93966320--93966510	93	2.1	92	87	3	269	26	19	17	36	1.94
93966432--93967003	88	7.0	77	71	18	370	28	16	18	36	1.93
93966432--93966792	78	4.5	76	76	12	294	30	16	18	34	1.93
93966774--93966835	30	2.1	30	90	6	99	19	9	29	41	1.83
93966168--93967003	253	3.4	246	82	7	887	29	16	17	36	1.92
93970298--93970379	39	2.2	35	77	12	83	42	1	0	56	1.07
93970314--93970376	21	3.4	18	78	16	67	34	1	0	63	1.04
93979655--93979700	21	2.2	21	88	7	67	50	2	0	47	1.13
93981038--93981064	12	2.2	12	100	0	54	59	0	0	40	0.98
93982521--93982560	20	2.0	20	85	9	55	67	0	25	7	1.16
93985466--93985523	17	3.1	19	79	20	77	50	6	1	41	1.39
93985468--93985524	20	3.0	20	78	21	77	47	7	1	43	1.40
93985474--93985569	17	5.6	17	67	22	58	53	4	3	39	1.36
93989942--93989991	20	2.5	20	83	3	66	56	2	0	42	1.11
94000980--94001108	67	1.9	67	100	0	258	64	6	8	20	1.43
94001271--94001325	26	2.0	28	89	6	87	58	9	9	23	1.58
94001271--94001333	26	2.5	26	82	12	69	55	7	7	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94005319--94005426	26	4.2	26	89	0	171	31	6	25	37	1.81
94007024--94007101	27	2.9	28	83	11	99	19	26	20	33	1.96
94010467--94010587	39	3.1	39	92	0	206	21	23	29	24	1.99
94011973--94012118	53	2.7	53	87	6	197	26	15	27	30	1.96
94015550--94015656	29	3.8	28	77	3	124	17	14	35	31	1.91
94019503--94019532	3	10.0	3	100	0	60	66	0	0	33	0.92
94022017--94022176	39	4.1	39	90	0	266	20	22	30	26	1.98
94026675--94026701	14	1.9	14	100	0	54	18	7	0	74	1.05
94031127--94031158	5	6.6	5	92	7	57	18	0	0	81	0.70
94031127--94031157	14	2.2	14	100	0	62	19	0	0	80	0.71
94031607--94031665	31	1.9	30	82	6	73	35	0	3	61	1.13
94035463--94035570	55	2.0	54	83	1	135	50	12	7	29	1.66
94038222--94038246	6	4.2	6	100	0	50	16	36	0	48	1.46
94039485--94039524	21	1.9	21	85	10	55	40	5	10	45	1.60
94040904--94040953	26	1.9	26	95	0	91	22	2	26	50	1.60
94041765--94041798	12	2.7	13	81	9	52	41	50	0	8	1.34
94043001--94043047	25	1.9	24	83	12	60	27	21	21	29	1.98
94043447--94043554	38	2.8	38	85	0	135	28	26	22	22	1.99
94045972--94046324	3	116.0	3	66	18	81	27	8	3	60	1.41
94046280--94046324	22	2.1	21	91	4	72	31	6	0	62	1.21
94047665--94047708	17	2.5	17	85	7	52	34	4	2	59	1.30
94049740--94049786	18	2.5	20	79	13	62	51	4	0	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94056349--94056482	69	1.9	70	86	4	191	44	9	11	34	1.73
94057154--94057274	60	2.0	60	100	0	242	23	29	13	33	1.92
94057327--94057402	38	2.0	38	100	0	152	39	15	21	23	1.92
94057374--94057423	22	2.2	22	96	3	91	36	20	18	26	1.95
94060738--94061539	77	10.2	77	84	4	878	37	13	9	39	1.77
94060750--94061492	157	4.8	156	88	4	1002	38	12	9	39	1.76
94060750--94061483	313	2.3	313	87	5	1004	38	12	9	39	1.76
94061669--94061717	18	2.6	18	81	12	55	34	2	0	63	1.06
94063348--94063385	20	1.9	20	89	10	60	57	10	0	31	1.32
94066778--94066829	23	2.2	24	82	10	70	63	1	0	34	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311