genome.fa.s12.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  289  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94066785--94066835	23	2.2	24	96	3	95	62	0	0	37	0.95
94083772--94083842	35	2.0	35	100	0	142	36	26	5	30	1.80
94084942--94085045	18	5.5	18	75	12	93	26	0	9	62	1.32
94084942--94085023	9	8.9	9	78	5	74	26	1	8	63	1.31
94085134--94085177	18	2.4	18	80	0	61	40	0	2	56	1.11
94085339--94085365	14	1.9	14	100	0	54	51	7	7	33	1.58
94086426--94086458	15	2.1	17	88	11	52	48	6	0	45	1.27
94093814--94093926	59	1.9	58	94	1	199	53	1	4	39	1.31
94098538--94098639	28	3.6	28	93	0	159	36	10	23	29	1.89
94099224--94099249	11	2.4	11	100	0	52	50	0	7	42	1.31
94099784--94099828	23	2.0	23	87	12	67	51	2	0	46	1.13
94101522--94101571	24	2.0	26	88	7	77	54	2	10	34	1.45
94101678--94101776	25	4.1	23	74	11	67	56	2	10	31	1.44
94101726--94101776	25	2.0	25	92	3	84	60	0	9	29	1.28
94101726--94101806	26	3.1	26	81	13	87	59	2	9	28	1.42
94103995--94104200	40	5.2	40	90	0	324	28	26	21	23	1.99
94103995--94104200	80	2.6	80	95	0	360	28	26	21	23	1.99
94105615--94105642	13	2.2	13	100	0	56	57	14	0	28	1.38
94108779--94108828	24	2.0	26	88	7	77	54	2	10	34	1.45
94108935--94109033	25	4.1	24	71	16	80	57	2	9	31	1.41
94108983--94109063	26	3.1	26	78	16	87	60	2	8	28	1.39
94108991--94109031	11	3.2	13	76	16	50	63	0	9	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94109617--94109668	25	2.0	25	85	3	68	63	5	3	26	1.34
94115362--94115406	23	2.0	23	100	0	90	33	4	17	44	1.69
94117201--94117244	22	2.0	21	82	8	52	50	2	2	45	1.27
94119746--94119812	6	11.2	6	100	0	134	32	0	16	50	1.45
94120565--94120600	13	2.8	14	84	16	51	27	25	0	47	1.52
94120552--94120592	18	2.2	19	87	12	59	29	24	0	46	1.53
94122472--94122502	4	7.5	4	92	7	53	0	29	0	70	0.87
94123076--94123150	6	12.5	6	100	0	150	33	0	17	49	1.47
94129420--94129488	18	3.8	18	77	5	68	34	14	15	34	1.89
94130748--94130781	17	2.1	15	89	10	50	0	35	0	64	0.94
94130753--94130801	25	2.0	25	84	8	64	0	30	2	67	1.02
94131222--94131278	24	2.4	24	90	0	96	40	15	3	40	1.65
94135449--94135502	23	2.3	23	83	3	63	40	14	9	35	1.78
94141246--94141304	25	2.4	25	97	0	109	44	22	16	16	1.87
94144266--94144305	15	2.5	17	84	8	57	60	0	5	35	1.19
94144670--94144695	8	3.2	8	100	0	52	26	38	0	34	1.57
94153489--94153520	17	1.9	16	93	6	55	53	0	15	31	1.43
94156169--94156234	21	3.2	21	73	14	66	39	0	3	57	1.14
94156464--94156497	13	2.8	12	86	4	50	47	0	0	52	1.00
94156856--94156890	7	5.1	7	96	3	63	42	0	0	57	0.99
94157510--94157556	20	2.5	19	86	6	60	40	2	17	40	1.61
94158370--94158469	39	2.6	37	81	7	119	36	25	27	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94158868--94158908	21	1.9	22	85	5	57	41	14	0	43	1.45
94161251--94161295	21	2.1	21	83	0	54	22	26	26	24	2.00
94163391--94163573	86	2.1	86	81	4	206	41	8	12	37	1.73
94165668--94165749	20	4.0	20	73	22	71	25	7	2	64	1.32
94182684--94182718	18	1.9	18	88	0	52	31	0	11	57	1.34
94183033--94183097	25	2.9	23	80	15	66	66	7	0	26	1.19
94183059--94183097	19	2.0	20	90	5	62	71	7	0	20	1.10
94183646--94183678	16	2.0	17	88	5	50	42	6	0	51	1.26
94184436--94185207	132	5.9	130	76	6	567	30	18	18	33	1.95
94191829--94191859	11	2.8	11	100	0	62	74	0	25	0	0.82
94194403--94194437	18	1.9	18	88	0	52	31	0	11	57	1.34
94194712--94194744	16	2.0	17	88	5	50	42	6	0	51	1.26
94195504--94195895	132	3.0	130	84	4	547	32	18	15	32	1.92
94195504--94195895	130	3.0	129	84	5	545	32	18	15	32	1.92
94195515--94196011	130	3.8	131	80	5	524	31	18	16	32	1.94
94195938--94196176	132	1.8	132	80	7	288	25	17	19	37	1.93
94198206--94198250	22	2.0	22	83	8	56	33	11	8	46	1.70
94198388--94198419	6	5.3	6	92	0	55	43	15	21	18	1.87
94199522--94199771	137	1.8	135	81	8	308	41	9	5	43	1.61
94202666--94202722	21	2.7	21	78	10	71	47	22	15	14	1.82
94209307--94209367	30	2.0	30	81	6	70	34	13	18	34	1.89
94209734--94209862	54	2.3	57	80	7	140	43	1	3	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94210039--94210070	16	2.0	16	93	0	55	28	34	6	31	1.82
94210393--94210450	23	2.5	22	81	15	64	36	12	6	44	1.68
94210690--94210757	3	23.3	3	78	11	70	61	4	0	33	1.16
94210665--94210755	39	2.3	40	90	1	139	58	6	1	34	1.31
94222523--94222565	18	2.4	17	81	11	50	27	2	18	51	1.59
94224791--94224820	14	2.1	14	93	0	51	46	36	0	16	1.47
94226570--94226647	33	2.4	32	79	16	88	51	6	1	41	1.36
94231157--94231214	29	2.0	29	100	0	116	17	20	10	51	1.74
94231912--94232004	45	2.1	44	97	2	177	34	3	2	60	1.25
94232816--94232857	20	2.1	20	86	0	57	50	0	4	45	1.23
94233100--94233139	16	2.5	16	79	0	53	47	7	15	30	1.72
94251901--94251927	2	13.5	2	100	0	54	51	0	0	48	1.00
94253768--94253804	17	2.2	17	100	0	74	51	5	16	27	1.66
94256558--94256634	31	2.5	31	84	0	100	25	44	16	12	1.84
94257339--94257370	13	2.5	13	94	0	55	78	0	3	18	0.89
94257343--94257379	17	2.2	17	90	0	56	75	0	5	18	0.99
94257428--94257458	4	7.5	4	92	7	53	70	0	29	0	0.87
94258662--94258709	15	3.3	15	82	2	62	37	2	12	47	1.53
94259341--94259381	19	2.2	19	87	12	59	46	0	24	29	1.53
94260233--94260257	2	12.5	2	100	0	50	52	0	0	48	1.00
94265138--94265183	19	2.4	18	82	10	56	19	23	13	43	1.86
94273408--94273666	134	1.9	134	88	1	385	32	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94273604--94274055	88	5.1	87	67	12	265	30	21	20	27	1.98
94273515--94274075	177	3.2	177	88	1	811	29	21	21	26	1.99
94273649--94273925	44	6.2	44	69	9	152	29	22	21	27	1.99
94274370--94274428	31	2.0	31	90	6	95	27	38	15	18	1.91
94274846--94274879	17	2.0	17	94	0	59	44	5	38	11	1.65
94285739--94285846	38	2.8	38	85	2	137	21	23	26	28	1.99
94285851--94285974	64	1.9	64	96	0	230	12	25	31	30	1.92
94285915--94286150	43	5.5	43	90	0	373	11	24	32	31	1.91
94285818--94286017	107	1.9	105	89	2	310	12	24	31	31	1.92
94286127--94286157	16	1.9	16	93	0	53	12	29	29	29	1.94
94289619--94289978	47	7.7	45	73	12	262	28	18	29	23	1.98
94289619--94289979	94	3.9	93	78	8	376	28	18	29	23	1.98
94289619--94289979	141	2.6	137	80	9	399	28	18	29	23	1.98
94305191--94305247	30	1.9	30	88	0	87	29	15	28	26	1.96
94305597--94305858	46	5.6	45	73	10	172	29	19	29	22	1.98
94307845--94307955	47	2.4	46	83	8	145	36	23	15	25	1.94
94308718--94308746	4	7.2	4	100	0	58	0	24	0	75	0.80
94311233--94311298	33	2.0	34	85	8	91	81	4	4	9	0.96
94311241--94311294	8	6.5	8	79	12	56	81	3	3	11	0.95
94314813--94314845	17	1.9	17	93	0	57	75	6	0	18	1.00
94315708--94316687	171	5.7	171	86	4	1277	30	18	25	26	1.98
94316157--94316562	44	9.2	44	67	12	188	29	16	26	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94315972--94316578	44	13.9	44	65	16	170	29	17	25	27	1.98
94316668--94316773	45	2.4	45	93	0	176	27	16	26	29	1.97
94324050--94324106	30	1.9	30	85	0	78	28	22	7	42	1.80
94333573--94333604	11	2.8	12	86	13	50	68	0	0	31	0.90
94341103--94341150	18	2.8	18	87	9	73	41	10	0	47	1.37
94342925--94342982	21	2.8	20	87	10	55	3	50	17	29	1.62
94342936--94343026	21	4.3	21	82	8	80	3	46	19	30	1.66
94344814--94344848	10	3.4	10	92	7	61	34	17	17	31	1.93
94344809--94344848	21	1.9	21	94	0	71	37	17	15	30	1.90
94344808--94344860	21	2.5	20	84	3	70	37	16	13	32	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311