genome.fa.s12.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  112  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37113792--37113899	54	2.0	54	96	0	198	26	31	16	25	1.97
37115831--37116002	51	3.5	48	79	10	193	31	25	18	25	1.97
37115821--37116006	101	1.9	100	91	1	309	31	25	18	24	1.98
37117647--37117700	28	1.9	28	100	0	108	24	11	40	24	1.87
37124209--37124332	45	2.7	47	81	15	152	28	29	20	21	1.98
37124163--37124332	93	1.8	93	91	1	279	28	28	20	22	1.98
37131713--37131880	91	1.8	91	92	3	284	29	29	19	21	1.98
37131708--37131877	45	3.7	46	77	16	192	30	28	19	21	1.98
37132299--37132358	30	2.0	30	90	0	93	30	25	8	36	1.85
37140192--37140252	15	4.1	15	79	8	61	55	14	18	11	1.68
37142752--37142926	46	3.8	45	77	13	167	29	30	20	20	1.97
37142759--37142931	93	1.9	93	88	2	267	28	30	20	20	1.98
37142807--37142946	46	3.0	46	74	13	126	29	30	20	20	1.97
37163420--37163477	24	2.4	24	91	0	89	25	15	32	25	1.95
37199461--37199642	48	3.8	48	82	0	202	24	17	31	26	1.97
37201703--37201736	10	3.4	10	84	15	52	17	32	8	41	1.80
37223273--37223359	43	2.0	43	90	0	138	26	13	22	36	1.92
37229974--37230139	46	3.6	45	77	11	165	22	18	26	32	1.97
37233117--37233198	27	3.0	27	92	0	137	31	9	30	28	1.89
37237647--37237871	40	5.6	40	84	7	244	25	27	21	24	1.99
37237647--37237872	80	2.8	80	84	5	287	26	27	21	24	1.99
37237647--37237872	120	1.9	120	82	5	287	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37245611--37245794	40	4.7	39	82	8	212	26	27	22	23	2.00
37245611--37245794	79	2.3	80	81	8	207	26	27	22	23	2.00
37259914--37260065	27	5.6	27	77	1	117	44	21	8	25	1.80
37259914--37260065	54	2.8	54	81	5	148	44	21	8	25	1.80
37260060--37260119	27	2.2	26	83	13	77	36	18	18	26	1.94
37260074--37260157	27	3.1	27	85	0	96	35	17	19	27	1.94
37266187--37266312	47	2.7	47	94	0	225	34	12	26	26	1.92
37266187--37266553	97	3.8	95	78	12	288	35	9	26	28	1.87
37266283--37266560	48	5.8	48	89	3	398	36	7	26	29	1.84
37266283--37266560	145	1.9	143	88	4	416	36	7	26	29	1.84
37266235--37266557	97	3.4	96	85	6	397	35	8	26	29	1.86
37266706--37266813	36	2.9	37	93	2	182	23	18	31	26	1.97
37268076--37268500	79	5.4	79	92	2	647	26	20	26	26	1.99
37268076--37268516	40	11.1	40	86	3	570	26	20	26	26	1.99
37268076--37268516	119	3.7	118	86	3	598	26	20	26	26	1.99
37268680--37268730	25	2.0	25	85	7	68	31	7	31	29	1.86
37272574--37272699	47	2.7	47	92	0	207	35	11	26	25	1.91
37272669--37272949	48	5.8	48	89	3	411	36	7	26	29	1.84
37272670--37272949	146	1.9	144	88	2	418	36	7	26	29	1.84
37272672--37272946	98	2.8	98	88	3	403	36	7	26	29	1.84
37273096--37273204	37	2.9	37	94	0	182	22	20	31	25	1.98
37275570--37275655	33	2.5	34	79	5	102	12	6	38	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37277891--37278040	42	3.5	43	77	13	157	26	20	24	29	1.99
37282828--37283080	48	5.3	48	77	7	289	37	25	11	26	1.89
37282870--37283106	24	9.9	24	76	6	187	37	26	10	25	1.89
37282828--37283106	96	2.9	96	94	1	470	36	25	11	26	1.89
37286426--37286609	40	4.6	40	82	6	196	23	20	27	28	1.99
37286426--37286606	80	2.3	81	83	9	221	23	20	27	27	1.99
37286507--37286656	40	3.8	38	80	10	131	25	22	28	24	1.99
37293845--37294149	48	6.4	48	79	6	330	35	26	11	25	1.91
37293846--37294148	96	3.2	96	96	0	552	35	26	11	26	1.91
37293817--37294149	24	13.9	24	74	9	270	35	26	12	25	1.91
37294576--37294607	16	2.0	16	93	0	55	56	15	0	28	1.40
37305855--37305979	37	3.5	36	79	8	132	39	33	12	14	1.84
37310242--37310297	26	2.2	25	77	3	58	41	16	10	32	1.82
37312801--37312985	79	2.3	81	83	9	229	25	27	22	24	2.00
37312801--37312985	40	4.7	40	82	7	225	25	27	22	24	2.00
37320694--37320878	79	2.3	80	81	7	207	26	27	21	24	1.99
37320694--37320878	40	4.7	40	82	7	216	26	27	21	24	1.99
37323828--37323882	28	1.9	29	82	10	69	20	43	20	16	1.88
37342110--37342240	49	2.7	48	84	4	156	22	25	21	30	1.99
37346172--37346396	40	5.6	40	80	2	236	25	22	27	25	2.00
37346172--37346432	80	3.3	80	79	4	251	25	22	26	25	2.00
37354310--37354505	40	4.9	40	78	10	186	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37354393--37354534	40	3.5	40	85	0	122	26	24	26	23	2.00
37354310--37354570	80	3.3	79	78	6	244	26	23	25	25	2.00
37363174--37363487	49	6.5	47	76	13	268	23	31	18	26	1.98
37363077--37363389	98	3.3	98	85	3	352	26	30	16	26	1.97
37363218--37363486	142	1.9	142	84	6	366	24	31	18	25	1.98
37366896--37366924	2	14.5	2	100	0	58	51	0	48	0	1.00
37376950--37377025	31	2.5	31	91	0	125	22	31	28	17	1.96
37377995--37378039	22	2.0	22	86	0	63	68	2	6	22	1.24
37381398--37381455	30	1.9	30	89	6	91	18	27	31	22	1.97
37383274--37383307	6	5.8	6	89	6	52	85	0	2	11	0.71
37383274--37383307	11	2.9	12	86	8	52	85	0	2	11	0.71
37383275--37383307	17	1.9	17	93	0	57	84	0	3	12	0.72
37392944--37393377	215	2.0	215	96	0	805	32	18	17	31	1.94
37396470--37396589	43	2.8	42	74	7	125	26	23	16	33	1.96
37398558--37398596	17	2.6	14	78	21	51	28	0	33	38	1.57
37398564--37398599	17	2.1	17	100	0	72	27	0	36	36	1.57
37399048--37399086	21	1.9	21	94	5	71	66	5	10	17	1.39
37406735--37406798	31	2.1	31	90	0	101	25	23	15	35	1.94
37407053--37407119	20	3.3	20	85	0	98	32	20	14	31	1.93
37409208--37409236	6	4.8	6	100	0	58	31	17	17	34	1.93
37415940--37415991	21	2.5	21	87	3	70	25	36	23	15	1.93
37423324--37423350	13	2.1	13	100	0	54	14	37	33	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37431814--37432038	40	5.7	40	85	5	287	24	21	28	25	1.99
37431814--37432071	80	3.2	80	82	7	233	25	21	27	25	1.99
37439815--37440038	40	5.6	39	85	5	272	24	21	28	25	1.99
37439815--37440038	79	2.8	79	85	4	283	24	21	28	25	1.99
37439854--37440071	79	2.8	79	84	6	230	26	20	27	24	1.99
37446703--37446924	40	5.7	40	86	8	280	24	22	27	24	2.00
37454757--37455013	40	6.5	40	83	8	278	25	22	26	25	2.00
37454756--37455013	119	2.2	119	82	8	312	25	22	26	25	2.00
37457809--37457937	49	2.6	50	81	6	156	26	26	20	27	1.99
37459616--37459648	6	5.5	6	100	0	66	33	15	18	33	1.92
37466338--37466382	20	2.2	20	84	4	54	24	35	22	17	1.95
37470656--37470711	24	2.3	24	96	0	103	44	3	14	37	1.62
37472602--37472662	27	2.3	27	97	0	113	34	26	19	19	1.96
37474065--37474194	49	2.7	49	81	2	145	23	24	20	31	1.98
37474252--37474339	46	1.9	46	88	0	131	23	27	21	27	1.99
37479740--37482661	974	3.0	974	98	0	5558	28	24	19	27	1.99
37486927--37487251	49	6.8	46	72	13	239	24	30	19	26	1.98
37486883--37487154	98	2.8	98	84	2	347	26	29	17	26	1.98
37486979--37487247	142	1.9	142	82	4	337	24	30	18	26	1.98
37488750--37488779	12	2.4	13	88	11	53	50	20	6	23	1.71
37489716--37489748	5	6.6	5	100	0	66	78	0	0	21	0.75
37505254--37505311	30	1.9	30	89	6	91	17	29	32	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37516085--37516356	39	7.0	39	87	0	391	24	27	24	23	2.00
37516389--37516423	12	2.9	12	100	0	70	40	25	0	34	1.56
37520768--37520825	30	1.9	30	82	6	73	17	25	32	24	1.96
37524122--37524234	43	2.7	41	75	5	118	28	24	15	31	1.95
37527362--37527472	40	2.8	39	82	5	116	25	21	28	24	1.99
37531300--37531333	11	3.2	11	87	8	52	55	2	26	14	1.53
37532522--37532548	5	5.4	5	100	0	54	22	0	0	77	0.76
37535407--37535572	43	3.9	42	73	11	140	30	24	16	28	1.97
37536887--37536925	19	2.1	19	85	0	51	71	7	5	15	1.26
37537360--37537447	28	3.1	29	79	10	94	35	21	22	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311