genome.fa.s12.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  140  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47385599--47385658	30	2.0	30	90	0	93	30	25	8	36	1.85
47394683--47394733	25	2.0	26	88	3	77	41	11	9	37	1.75
47407045--47407129	42	2.0	42	95	0	152	31	12	20	35	1.90
47408243--47408295	20	2.7	20	90	0	88	20	32	30	16	1.95
47409642--47409763	47	2.6	47	82	5	138	23	22	30	23	1.99
47416343--47416424	26	3.2	26	98	0	155	30	6	26	36	1.81
47418031--47418168	27	5.1	27	84	6	174	18	23	23	35	1.95
47418031--47418168	54	2.5	53	92	2	222	18	23	23	35	1.95
47418123--47418189	27	2.5	26	85	4	80	22	23	17	35	1.95
47419622--47419687	33	2.0	33	100	0	132	18	30	18	33	1.94
47422701--47422748	3	16.0	3	100	0	96	33	0	0	66	0.92
47423468--47423504	13	2.8	13	95	0	65	37	18	8	35	1.81
47431730--47431908	43	4.2	43	80	7	148	29	16	25	29	1.96
47431728--47431900	86	2.0	86	80	2	195	29	15	25	29	1.96
47431785--47431927	43	3.3	43	82	3	110	27	19	24	27	1.99
47431999--47432061	33	2.0	32	87	6	92	60	19	6	14	1.55
47432296--47432352	21	2.7	21	88	0	87	3	50	19	26	1.63
47437999--47438272	9	30.0	9	75	10	207	37	1	14	45	1.54
47438012--47438093	43	1.9	43	92	0	137	40	0	13	46	1.43
47438055--47438272	71	3.1	70	86	4	251	36	1	14	46	1.56
47438060--47438272	44	4.8	44	81	5	216	37	1	14	46	1.56
47438377--47438461	15	5.8	15	71	20	81	51	0	1	47	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47438380--47438461	29	2.9	29	87	7	114	52	0	1	46	1.08
47438705--47438838	64	2.1	64	95	0	241	45	5	11	37	1.64
47441249--47441421	46	3.7	46	77	11	192	23	20	26	29	1.99
47441246--47441416	93	1.8	93	91	2	281	22	21	27	28	1.99
47444183--47444217	17	2.0	17	88	5	52	71	0	0	28	0.86
47444330--47444383	16	3.8	16	68	31	50	50	3	9	37	1.52
47444576--47444668	7	12.9	7	69	6	51	38	38	1	21	1.61
47444495--47444686	80	2.4	80	90	0	285	35	38	1	25	1.65
47444603--47444668	29	2.3	29	78	5	80	40	37	0	21	1.53
47444776--47444811	7	5.1	7	100	0	72	58	27	0	13	1.36
47444776--47444819	14	3.1	14	93	0	61	54	29	0	15	1.42
47444776--47444872	21	4.7	21	72	11	76	51	26	0	21	1.48
47444785--47444925	74	1.9	75	85	10	200	46	29	1	21	1.60
47444785--47444956	74	2.3	74	80	14	194	45	29	1	23	1.62
47445776--47445916	41	3.4	41	85	1	194	31	22	16	29	1.96
47450112--47450142	13	2.3	14	94	5	55	54	0	0	45	0.99
47451097--47451150	23	2.4	23	82	11	67	68	5	1	24	1.21
47461361--47461448	41	2.1	41	82	0	104	38	21	19	20	1.93
47461384--47461518	41	3.3	41	77	0	135	38	23	19	18	1.93
47461484--47461638	38	4.1	38	81	0	186	37	30	19	12	1.88
47466406--47466489	25	3.5	25	71	19	79	39	2	3	54	1.31
47466994--47467254	68	3.8	68	80	5	253	27	18	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47466981--47467296	136	2.3	136	82	3	368	26	18	17	37	1.93
47467001--47467296	68	4.3	68	77	6	231	26	18	17	37	1.93
47469773--47469842	30	2.3	31	78	16	83	61	2	2	32	1.25
47469786--47469844	30	1.9	31	89	3	93	64	3	3	28	1.26
47477225--47477254	9	3.3	9	100	0	60	50	0	0	50	1.00
47492899--47492950	27	1.9	27	96	0	95	13	25	32	28	1.93
47492613--47492984	105	3.6	105	94	2	642	18	20	30	30	1.97
47499903--47499997	44	2.2	44	79	11	106	60	2	3	34	1.25
47502281--47502500	39	5.5	39	85	7	259	25	27	22	24	2.00
47502281--47502500	40	5.6	40	84	9	283	25	27	22	24	2.00
47502281--47502496	82	2.7	79	87	5	287	25	27	22	24	2.00
47508547--47508753	40	5.2	40	87	4	287	25	28	22	24	2.00
47513810--47513993	40	4.6	40	84	5	221	25	26	23	24	2.00
47516653--47516797	44	3.3	44	75	5	134	33	15	22	28	1.94
47516910--47517287	132	2.9	133	84	3	478	24	24	20	30	1.99
47518547--47518617	23	2.9	23	82	13	88	15	0	7	77	0.97
47524347--47524434	20	4.6	18	72	13	61	61	1	4	32	1.24
47524363--47524434	38	1.9	37	86	8	101	58	1	4	36	1.26
47524406--47524443	16	2.4	16	82	8	51	63	0	2	34	1.09
47524549--47524612	23	2.8	22	76	9	65	70	6	0	23	1.10
47524543--47524621	20	3.6	21	78	13	70	68	5	1	25	1.17
47525202--47525236	18	1.9	18	88	11	54	5	11	8	74	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47526994--47527050	30	1.9	30	85	7	80	24	33	26	15	1.95
47554982--47555064	35	2.3	35	81	2	94	37	30	15	16	1.90
47558527--47558557	15	2.0	15	93	6	53	25	0	0	74	0.82
47562340--47562373	5	6.6	5	93	6	59	82	0	0	17	0.67
47568203--47568381	55	3.3	54	82	5	218	23	25	16	34	1.95
47568409--47568572	47	3.5	46	74	8	145	21	24	18	35	1.95
47573636--47573677	20	2.1	20	100	0	84	21	23	14	40	1.90
47575727--47576068	47	7.3	47	91	0	549	28	29	8	34	1.86
47580885--47580941	28	2.0	28	96	0	105	40	15	10	33	1.82
47581350--47581484	53	2.5	53	81	4	155	20	24	21	34	1.97
47581350--47581517	55	3.1	54	79	2	176	22	23	18	35	1.95
47581516--47581621	47	2.3	47	93	0	176	25	24	13	36	1.92
47593663--47593721	30	2.0	30	86	6	84	49	13	3	33	1.59
47595113--47595147	11	3.3	11	84	8	54	51	20	0	28	1.47
47595111--47595166	9	6.2	9	77	20	55	55	19	0	25	1.43
47597291--47597329	19	2.1	19	85	4	53	7	20	2	69	1.26
47599449--47599501	10	4.8	11	76	15	56	54	18	0	26	1.44
47599449--47599501	23	2.4	22	87	6	72	54	18	0	26	1.44
47599449--47599520	9	8.4	9	71	26	59	55	19	0	25	1.43
47599668--47599708	19	2.1	20	86	4	57	46	12	9	31	1.74
47599668--47599776	50	2.1	52	83	6	134	41	12	13	32	1.83
47600546--47600581	15	2.5	14	86	8	54	66	2	0	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47601004--47601049	21	2.2	21	84	7	58	58	0	2	39	1.10
47606438--47606569	33	3.9	34	75	11	108	42	15	9	31	1.80
47607047--47607107	32	1.9	32	100	0	122	44	3	14	37	1.62
47620462--47620530	11	6.2	12	72	14	51	81	7	1	10	0.94
47620464--47620530	24	2.8	23	79	4	71	82	7	1	8	0.92
47620491--47620530	21	1.9	21	84	0	53	80	7	2	10	1.00
47620947--47621118	84	2.1	80	81	11	188	2	45	25	27	1.66
47620947--47621118	41	4.2	40	81	10	161	2	45	25	27	1.66
47620992--47621118	39	3.2	38	78	13	139	0	44	25	29	1.59
47629622--47629839	68	3.3	64	79	12	167	31	16	27	23	1.97
47638431--47638554	45	2.7	46	84	9	139	21	21	26	29	1.99
47645822--47645914	42	2.2	42	98	0	177	21	27	30	20	1.98
47656215--47656344	49	2.7	49	85	4	174	29	17	28	24	1.97
47663754--47663847	6	17.2	5	74	16	64	75	1	4	19	1.03
47663767--47663826	17	3.6	16	78	10	66	75	1	5	18	1.07
47663754--47663840	34	2.6	34	82	10	99	75	1	4	18	1.03
47663794--47663845	21	2.4	22	87	3	70	80	0	5	13	0.88
47663782--47663840	16	3.6	15	78	21	57	79	1	5	13	0.97
47684431--47684571	40	3.5	40	88	1	176	24	21	27	26	1.99
47684431--47684602	80	2.2	80	80	3	186	23	20	27	28	1.99
47690529--47690774	43	5.7	43	79	5	228	21	14	20	43	1.88
47690521--47690774	85	3.0	85	85	2	303	20	14	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47690521--47690765	128	1.9	128	86	1	348	20	14	20	44	1.87
47690615--47690785	87	2.0	86	84	2	218	22	14	20	42	1.88
47692858--47693101	27	9.0	27	89	0	344	27	22	9	40	1.84
47696195--47696231	14	2.6	15	83	12	51	43	8	0	48	1.32
47696246--47696433	61	3.1	61	68	14	181	43	2	5	48	1.39
47696307--47696352	16	2.9	16	78	12	51	45	0	2	52	1.13
47696202--47696470	120	2.2	120	93	3	454	42	2	4	49	1.37
47696247--47696430	57	3.1	58	66	25	139	42	2	5	48	1.39
47696427--47696468	15	2.7	16	82	14	52	45	0	2	52	1.13
47696418--47696459	15	2.9	15	82	10	52	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311