genome.fa.s12.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  147  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49970110--49970282	46	3.7	46	78	11	192	31	27	19	22	1.98
49970705--49970764	30	2.0	30	90	0	93	30	25	8	36	1.85
49971574--49971708	52	2.7	50	82	2	153	32	25	15	26	1.95
49981482--49981558	29	2.7	29	93	0	127	16	18	31	33	1.93
49995309--49995334	9	2.9	9	100	0	52	65	11	11	11	1.48
50003828--50003966	43	3.3	41	73	6	98	26	18	23	31	1.97
50003852--50003935	42	2.0	43	81	6	100	26	19	21	33	1.97
50011904--50011944	20	2.0	20	100	0	82	41	0	14	43	1.45
50012308--50012393	43	2.0	43	86	8	122	24	16	26	32	1.96
50016024--50016109	43	2.0	43	90	0	136	36	24	15	24	1.94
50021730--50021782	24	2.2	24	83	12	65	30	37	15	16	1.90
50025310--50025409	39	2.5	40	85	1	130	25	26	29	20	1.99
50025310--50025460	40	3.8	39	85	4	178	23	24	29	22	1.99
50025502--50025528	14	1.9	14	100	0	54	29	7	22	40	1.81
50035301--50035618	48	6.7	47	73	11	197	24	26	20	28	1.99
50035300--50035618	94	3.4	92	78	9	270	24	26	20	28	1.99
50035298--50035622	141	2.3	142	80	8	360	24	27	20	28	1.99
50037335--50037464	48	2.7	48	84	0	161	27	19	24	28	1.98
50039054--50039134	26	3.2	26	63	16	69	32	6	28	33	1.82
50046613--50046655	22	2.0	21	86	4	59	46	18	4	30	1.69
50051625--50051791	46	3.6	46	71	16	130	31	29	17	20	1.96
50051633--50051804	93	1.8	93	87	2	256	30	29	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50053448--50053994	47	11.6	47	92	1	869	29	29	8	33	1.87
50053448--50053994	143	3.9	143	93	0	895	29	29	8	33	1.87
50053448--50053994	190	2.9	188	93	2	898	29	29	8	33	1.87
50072243--50072316	37	2.0	37	97	0	139	27	14	21	36	1.93
50078643--50078794	42	3.6	43	80	10	150	32	25	17	24	1.97
50080325--50080497	43	4.0	43	79	12	203	23	17	28	30	1.97
50088064--50088230	54	3.1	53	88	3	228	24	16	17	40	1.90
50088064--50088230	27	6.2	27	85	1	192	24	16	17	40	1.90
50092617--50092704	28	3.1	29	78	10	85	35	20	22	21	1.96
50092810--50092874	28	2.3	28	91	0	103	32	7	27	32	1.85
50099964--50100002	19	2.1	19	85	0	51	71	7	5	15	1.26
50100440--50100516	27	2.8	28	82	7	88	36	18	23	22	1.95
50100632--50100696	28	2.3	28	91	0	103	32	7	27	32	1.85
50105463--50105533	30	2.4	30	100	0	142	18	32	29	19	1.96
50110594--50110654	30	2.0	30	83	0	77	29	24	8	37	1.84
50116333--50116472	60	2.3	60	96	0	262	33	23	17	25	1.96
50117001--50117030	15	2.0	15	100	0	60	26	26	0	46	1.53
50129886--50130061	46	3.8	46	79	12	216	20	21	29	28	1.98
50129883--50130054	93	1.8	93	96	0	317	20	21	29	27	1.98
50145634--50145658	9	2.8	9	100	0	50	36	8	32	24	1.84
50149639--50149747	54	2.0	54	96	0	200	34	21	17	26	1.95
50150300--50150476	3	60.7	3	75	7	159	60	0	6	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50151231--50151272	22	2.0	22	85	4	59	14	19	14	52	1.75
50151971--50152635	45	14.7	42	66	17	246	29	20	18	32	1.96
50151836--50152135	137	2.2	138	90	0	467	29	19	18	34	1.95
50152144--50152498	92	3.8	92	73	10	303	29	20	17	32	1.96
50151971--50152498	181	2.9	181	90	0	831	29	20	17	32	1.96
50152293--50152634	137	2.5	136	88	1	508	28	20	19	31	1.96
50151974--50152498	89	5.7	94	72	12	423	29	20	17	32	1.96
50164370--50164433	31	2.1	29	83	11	76	68	4	9	17	1.34
50164498--50164541	15	2.9	15	89	0	61	50	0	13	36	1.42
50164667--50164792	3	43.0	3	74	4	105	58	0	7	33	1.31
50165451--50165491	16	2.7	15	81	7	55	82	0	12	4	0.81
50170176--50170219	19	2.3	19	92	0	79	25	9	13	52	1.70
50170346--50170430	45	1.9	44	87	2	125	27	14	21	37	1.91
50189030--50189060	15	2.1	15	100	0	62	29	19	6	45	1.75
50192678--50192724	21	2.2	22	92	3	78	21	19	38	21	1.94
50203237--50203265	8	3.8	8	90	9	51	44	0	0	55	0.99
50203719--50203801	41	2.0	41	100	0	166	20	16	7	55	1.65
50205093--50205316	43	5.2	43	79	5	215	26	29	18	25	1.98
50208735--50208830	41	2.4	42	76	11	103	25	17	14	42	1.87
50208764--50208855	39	2.3	39	83	7	105	25	17	14	43	1.86
50208979--50209003	7	3.6	7	100	0	50	60	0	0	40	0.97
50208998--50209045	15	3.1	15	84	3	60	29	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50208984--50209045	15	4.1	15	77	6	54	35	0	1	62	1.05
50209012--50209045	7	4.7	7	85	7	50	29	0	0	70	0.87
50208998--50209045	8	6.2	8	83	9	55	29	0	2	68	1.01
50209560--50209606	21	2.2	21	84	3	58	38	44	2	14	1.58
50209567--50209599	14	2.3	15	89	5	50	36	45	3	15	1.61
50209588--50209635	15	3.3	15	79	5	53	45	33	0	20	1.52
50209591--50209683	22	4.3	21	66	15	55	45	29	1	24	1.60
50209659--50209683	7	3.6	7	100	0	50	48	36	0	16	1.46
50209835--50209903	21	3.2	21	81	2	66	39	39	1	20	1.61
50209850--50209900	14	3.6	14	74	7	50	37	41	0	21	1.54
50209881--50209928	25	1.9	25	83	8	62	37	43	0	18	1.51
50209909--50209943	15	2.4	15	90	4	54	42	34	2	20	1.66
50210334--50210444	53	2.1	53	86	0	159	35	15	16	33	1.90
50210743--50210829	40	2.2	40	89	0	138	22	19	17	40	1.91
50212646--50212780	66	2.0	66	94	0	234	48	11	15	24	1.77
50214552--50214718	38	4.4	38	80	3	183	38	23	20	16	1.92
50218974--50219110	39	3.5	39	94	0	238	27	30	22	19	1.98
50219780--50219824	2	22.5	2	81	0	54	46	6	2	44	1.42
50222975--50223062	6	14.3	6	71	17	65	48	14	17	19	1.81
50222975--50223062	19	4.8	18	70	18	65	48	14	17	19	1.81
50222984--50223062	31	2.5	31	85	0	113	49	13	17	18	1.80
50223182--50223241	27	2.3	26	85	2	75	35	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50223203--50223266	33	2.0	32	84	3	83	35	20	23	20	1.96
50223579--50223721	27	5.3	27	88	3	173	26	18	16	37	1.92
50223703--50223995	27	10.9	27	80	7	161	32	8	20	38	1.82
50223566--50223749	81	2.3	81	76	1	190	29	16	19	34	1.94
50223703--50224016	81	3.9	80	82	4	193	31	8	21	38	1.83
50223813--50224016	107	1.9	107	90	4	331	31	7	19	41	1.79
50223740--50224016	27	10.3	27	84	2	290	31	8	20	39	1.82
50227455--50227679	40	5.7	40	80	8	226	24	28	21	25	1.99
50227455--50227679	80	2.8	80	82	6	251	24	28	21	25	1.99
50227611--50227688	40	1.9	41	82	10	97	26	28	20	24	1.99
50232571--50232753	39	4.7	39	90	0	294	30	28	20	20	1.98
50239498--50239568	35	2.0	35	91	5	117	28	22	11	38	1.88
50244672--50244742	35	2.0	35	89	5	108	26	23	11	38	1.89
50247102--50247233	50	2.6	52	85	3	178	38	12	14	34	1.84
50247246--50247326	39	2.1	39	95	0	144	46	16	9	27	1.78
50248391--50248508	44	2.7	44	80	6	125	33	25	20	20	1.97
50257836--50257967	42	3.1	41	78	12	133	33	25	18	22	1.97
50268498--50268586	38	2.4	38	86	5	119	40	29	19	11	1.86
50268403--50268582	98	1.8	98	81	2	227	38	28	20	12	1.88
50268567--50268605	16	2.4	16	91	0	60	33	20	23	23	1.97
50268578--50268764	38	4.9	38	78	2	169	37	28	20	13	1.91
50268578--50268764	76	2.5	76	79	1	196	37	28	20	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50274835--50275097	38	6.9	38	77	0	195	38	25	20	15	1.92
50276321--50276364	19	2.3	19	100	0	88	36	4	9	50	1.55
50287994--50288419	47	9.1	47	92	0	656	28	31	9	31	1.88
50288070--50288143	22	3.2	22	63	10	58	28	32	10	28	1.91
50290713--50290758	24	1.9	24	86	8	67	32	30	13	23	1.93
50298081--50298107	14	1.9	14	100	0	54	74	25	0	0	0.83
50303695--50303740	5	9.0	5	81	13	58	58	2	0	39	1.10
50303691--50303765	28	2.9	26	77	12	75	65	2	0	32	1.07
50303720--50303766	18	2.7	18	83	6	53	70	2	0	27	0.99
50313997--50314124	27	4.7	27	82	5	143	26	16	28	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311