genome.fa.s12.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  93  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30725242--30725277	3	12.0	3	100	0	72	33	0	0	66	0.92
30725517--30725541	6	4.2	6	100	0	50	32	0	0	68	0.90
30728814--30728849	16	2.2	16	100	0	72	36	13	13	36	1.85
30749275--30749309	18	1.9	18	88	0	52	51	28	0	20	1.47
30751043--30751228	40	4.7	40	82	6	218	25	26	22	25	2.00
30751043--30751227	79	2.3	82	83	7	229	25	27	22	24	2.00
30759024--30759244	40	5.6	40	84	9	235	24	27	22	24	2.00
30765447--30765472	11	2.4	11	100	0	52	50	0	7	42	1.31
30765794--30765968	40	4.4	40	80	1	145	35	19	21	24	1.96
30765870--30765964	20	4.8	20	73	0	64	33	16	23	26	1.96
30765793--30765986	80	2.4	80	79	0	190	34	19	22	23	1.96
30769516--30769697	40	4.6	40	86	4	235	21	27	23	26	1.99
30773114--30773146	15	2.2	15	89	10	50	57	0	0	42	0.98
30775799--30775862	21	3.0	20	81	6	65	62	7	0	29	1.23
30778350--30778425	38	2.0	38	100	0	152	31	5	23	39	1.77
30778742--30778809	33	2.0	34	88	2	102	23	7	7	61	1.47
30786820--30786852	17	2.0	17	94	5	59	36	15	0	48	1.45
30787133--30787908	46	16.9	46	88	3	1055	21	23	14	40	1.90
30787138--30787911	92	8.4	92	93	0	1212	21	23	13	40	1.89
30787138--30787911	138	5.6	138	91	0	1174	21	23	13	40	1.89
30791914--30791962	21	2.2	24	82	10	59	38	16	18	26	1.91
30804406--30804760	184	1.9	184	81	3	419	40	16	13	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30809950--30810588	47	13.6	47	93	1	1057	31	8	30	28	1.87
30814511--30814610	47	2.2	46	83	8	123	47	15	7	31	1.71
30816346--30816381	9	3.9	9	88	3	54	11	0	36	52	1.37
30818140--30818170	16	1.9	16	93	0	53	9	12	9	67	1.41
30821749--30821957	38	5.0	38	71	20	157	28	17	24	29	1.97
30821779--30821917	48	2.9	48	83	1	181	30	17	22	30	1.96
30835641--30835693	26	2.0	26	100	0	106	28	11	0	60	1.31
30839672--30839846	49	3.5	49	81	3	224	28	25	17	28	1.98
30839668--30839851	100	1.8	100	91	0	305	28	25	18	27	1.98
30842347--30842375	15	1.9	15	100	0	58	62	13	13	10	1.55
30845934--30846111	27	6.6	27	83	3	196	26	14	29	29	1.95
30845934--30846111	54	3.3	55	84	4	236	26	14	29	29	1.95
30854027--30854203	27	6.6	27	82	5	187	26	14	29	29	1.95
30854027--30854177	53	2.8	54	84	5	198	27	15	29	28	1.96
30854027--30854203	55	3.3	53	84	3	221	26	14	29	29	1.95
30856605--30857192	47	12.5	47	92	1	944	32	8	29	29	1.87
30856924--30857002	25	3.3	25	62	16	67	35	3	27	32	1.75
30856605--30857192	238	2.5	235	92	1	980	32	8	29	29	1.87
30857313--30857389	34	2.1	35	83	9	93	25	18	31	24	1.97
30858286--30858481	38	5.1	40	89	8	284	21	20	30	27	1.98
30858286--30858508	115	2.0	112	83	9	283	22	21	30	26	1.99
30862021--30862601	47	12.4	47	95	1	1015	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30862406--30862537	46	3.0	40	96	3	131	32	9	29	28	1.88
30862720--30862798	37	2.1	37	88	4	115	25	18	30	25	1.98
30865748--30865828	24	3.4	24	78	13	78	34	14	19	30	1.92
30865819--30865879	23	2.7	22	70	12	52	34	19	18	27	1.95
30869347--30869598	39	6.5	39	90	1	364	30	28	21	19	1.97
30869673--30869752	28	2.9	28	82	0	97	30	23	11	35	1.90
30876097--30876144	24	2.0	24	95	0	87	45	6	20	27	1.75
30878077--30878260	67	2.8	64	75	11	178	28	16	30	24	1.96
30885986--30886078	35	2.7	35	86	3	116	29	17	16	37	1.91
30891422--30891504	30	2.8	30	90	3	123	42	31	13	13	1.82
30893141--30893374	48	4.9	48	75	4	204	29	20	28	21	1.98
30893141--30893374	96	2.4	96	85	2	310	29	20	28	21	1.98
30893041--30893370	144	2.3	143	79	2	322	28	19	28	23	1.98
30896031--30896234	53	3.8	54	78	4	205	20	23	17	38	1.93
30898652--30898795	24	6.0	23	90	4	171	27	20	21	29	1.98
30898672--30898795	24	5.2	24	97	0	212	28	20	20	30	1.98
30898845--30898911	20	3.3	20	93	0	116	32	20	11	34	1.90
30898845--30898900	11	5.5	11	71	16	57	32	19	12	35	1.89
30902574--30902638	20	3.3	19	73	16	51	38	16	21	23	1.93
30921890--30921921	16	2.0	16	93	0	55	46	12	21	18	1.82
30985431--30985463	16	2.0	17	88	5	50	42	12	15	30	1.83
30987443--30987482	19	2.0	20	90	4	64	32	7	5	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30993145--30993194	25	2.0	25	100	0	100	28	24	12	36	1.91
31028040--31028208	46	3.6	46	77	11	141	22	30	18	28	1.98
31032683--31032733	15	3.4	15	75	20	61	33	41	21	3	1.72
31032674--31032742	30	2.3	30	89	0	111	24	36	24	14	1.93
31033438--31033669	46	5.0	48	74	10	171	23	30	18	27	1.98
31043698--31043737	20	2.0	21	90	5	64	30	7	5	57	1.48
31051708--31051747	21	1.9	21	85	10	55	40	15	10	35	1.80
31064343--31064444	40	2.5	40	88	6	143	23	21	27	27	1.99
31072207--31072467	39	6.7	40	87	5	268	25	22	26	25	2.00
31072260--31072500	78	3.1	78	85	4	265	26	21	26	25	1.99
31088407--31088481	24	3.1	24	100	0	150	38	4	16	41	1.67
31098426--31098485	26	2.3	27	80	11	70	36	28	10	25	1.88
31098787--31098832	20	2.3	21	75	14	53	26	19	28	26	1.99
31099870--31100077	55	3.9	54	83	5	233	36	17	24	22	1.95
31100180--31100213	16	2.1	16	88	5	50	41	2	20	35	1.68
31106922--31107223	48	6.4	47	73	11	188	29	26	17	26	1.97
31117717--31117894	48	3.7	48	93	0	293	32	24	17	25	1.97
31117574--31117929	48	7.5	48	75	6	267	30	24	18	27	1.98
31120958--31121092	55	2.4	56	92	2	236	31	24	16	27	1.96
31122252--31122280	14	2.0	15	93	6	51	51	20	0	27	1.47
31124166--31124199	16	2.1	16	88	0	50	35	11	2	50	1.54
31128488--31128550	31	2.0	31	84	6	83	44	7	11	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31130584--31130638	27	2.0	27	92	0	92	52	9	21	16	1.71
31131020--31131067	20	2.4	20	82	0	60	14	22	25	37	1.92
31137348--31137478	46	2.8	46	90	2	210	29	28	21	20	1.98
31139124--31139163	21	2.0	21	90	5	64	10	32	30	27	1.89
31140977--31141023	20	2.3	20	92	0	85	40	19	17	23	1.91
31145634--31145683	20	2.4	21	83	3	66	38	18	22	22	1.94
31147225--31147267	21	2.1	20	83	12	52	27	4	13	53	1.60
31148887--31148915	3	9.7	3	100	0	58	0	34	65	0	0.93
31155589--31155639	3	16.0	3	84	11	50	62	5	0	31	1.19
31155706--31155784	3	25.3	3	74	16	56	65	1	2	30	1.13
31155701--31155780	17	4.3	18	80	14	83	63	1	2	32	1.15
31155706--31155784	20	4.1	20	75	21	78	65	1	2	30	1.13
31155711--31155793	14	5.5	14	75	19	60	68	1	2	27	1.09
31155742--31155793	14	3.4	15	81	7	61	75	0	1	23	0.91
31156287--31156372	30	2.9	30	92	0	145	25	6	50	17	1.71
31156321--31156371	18	3.2	18	64	30	51	23	7	52	15	1.68
31156899--31157605	86	8.3	87	83	6	637	19	22	21	35	1.96
31157060--31157606	44	12.7	44	69	11	319	19	23	22	34	1.96
31156889--31157606	172	4.2	172	84	4	755	19	22	21	35	1.96
31157059--31157606	258	2.1	261	88	2	811	19	23	22	34	1.96
31157060--31157648	86	6.8	86	85	4	663	20	22	22	34	1.96
31157725--31157848	64	1.9	64	88	0	185	37	13	16	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31158514--31158627	52	2.2	53	87	1	158	55	9	12	22	1.66
31158749--31159141	196	2.0	197	93	2	675	17	24	16	41	1.89
31162271--31162316	9	4.8	10	77	17	53	50	10	17	21	1.77
31162271--31162316	19	2.4	19	85	7	58	50	10	17	21	1.77
31164410--31164447	20	1.9	19	89	5	58	55	0	10	34	1.34
31164476--31164690	3	69.3	3	69	21	76	61	2	6	28	1.36
31166214--31166252	15	2.6	16	84	8	55	46	0	12	41	1.42
31166938--31167002	21	3.2	21	79	10	57	63	1	1	33	1.13
31166950--31167002	21	2.6	20	82	5	61	66	1	1	30	1.13
31172615--31172776	43	3.8	43	78	4	148	25	17	24	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311