genome.fa.s12.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  158  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53799382--53799442	27	2.3	27	85	0	86	29	19	13	37	1.90
53803525--53803568	5	9.4	5	87	9	58	77	0	22	0	0.77
53803525--53803568	14	3.1	14	87	6	63	77	0	22	0	0.77
53804300--53804342	14	3.0	15	76	10	54	39	32	2	25	1.69
53812255--53812421	71	2.3	72	86	5	230	26	20	20	31	1.98
53812255--53812421	24	7.0	24	87	3	230	26	20	20	31	1.98
53812534--53812581	25	1.9	25	86	0	69	25	16	25	33	1.96
53816427--53816466	21	2.0	20	85	5	53	27	30	5	37	1.78
53820543--53820734	24	8.0	24	91	1	287	26	21	21	30	1.98
53825661--53825708	10	4.7	10	97	2	87	50	16	20	12	1.78
53826867--53826964	28	3.5	28	80	2	99	32	24	13	29	1.93
53827500--53827580	42	1.9	41	82	9	101	20	32	25	20	1.98
53840719--53840808	28	3.2	27	85	7	119	20	24	23	32	1.98
53840719--53840833	55	2.1	56	83	8	146	19	24	21	34	1.96
53843892--53844033	42	3.3	43	78	10	139	31	26	16	24	1.97
53854057--53854090	17	1.9	18	88	5	52	38	5	5	50	1.51
53854170--53854220	25	2.0	25	85	7	68	47	5	1	45	1.38
53859229--53859318	28	3.2	27	82	7	101	20	23	23	33	1.97
53859249--53859318	27	2.5	28	88	4	97	17	24	22	35	1.95
53867039--53867128	28	3.2	27	85	7	119	20	24	23	32	1.98
53867039--53867153	55	2.1	56	83	8	146	19	24	21	34	1.96
53869229--53869441	46	4.8	46	76	17	216	27	29	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53869343--53869428	38	2.2	40	93	6	149	26	27	23	22	1.99
53869236--53869527	131	2.2	130	78	15	336	26	28	21	22	1.99
53875949--53876121	46	3.7	46	77	13	192	28	29	20	21	1.98
53888007--53888310	47	6.4	47	91	2	421	27	29	8	34	1.86
53899392--53899518	44	2.9	43	85	3	146	34	26	14	23	1.94
53902768--53902950	79	2.3	81	83	7	223	24	22	27	24	2.00
53902769--53902952	40	4.6	40	82	9	207	24	22	28	24	2.00
53902821--53902985	79	2.1	79	83	6	201	26	21	27	24	1.99
53910941--53911125	40	4.7	40	80	6	207	24	21	27	25	1.99
53910994--53911158	79	2.1	79	82	6	192	26	20	27	26	1.99
53921168--53921300	49	2.7	50	75	8	137	27	18	29	24	1.98
53935152--53935214	26	2.4	26	86	7	83	36	25	11	26	1.90
53935323--53935407	27	3.1	28	86	3	120	21	22	22	34	1.97
53935318--53935427	55	2.0	55	85	5	152	22	22	18	36	1.95
53942998--53943054	26	2.2	26	87	9	80	38	24	8	28	1.85
53943165--53943277	27	4.2	27	89	3	158	19	24	21	34	1.96
53943163--53943277	55	2.1	53	87	7	169	19	24	21	34	1.96
53953206--53953241	10	3.6	10	88	0	54	11	22	27	38	1.88
53957063--53957114	25	2.1	25	100	0	104	28	13	34	23	1.92
53957505--53957722	40	5.5	40	86	2	271	25	27	23	23	2.00
53967407--53967562	43	3.6	43	77	6	154	26	16	26	30	1.96
53971276--53971338	27	2.3	27	83	2	72	30	30	11	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53973730--53973800	25	2.8	25	86	2	97	23	23	23	28	2.00
53973729--53973827	25	4.0	24	78	12	69	26	23	23	27	2.00
53974021--53974103	30	2.7	31	90	3	134	31	20	26	21	1.98
53974021--53974098	31	2.6	30	93	2	129	30	21	26	20	1.98
53981344--53981517	89	2.0	89	82	2	215	32	14	20	31	1.93
53988206--53988400	27	7.2	27	79	12	222	34	24	24	16	1.96
53988206--53988400	81	2.4	81	85	10	249	34	24	24	16	1.96
53988206--53988400	54	3.6	54	93	1	320	34	24	24	16	1.96
53991018--53991155	39	3.5	39	86	2	179	31	18	24	24	1.98
53993097--53993204	26	4.2	26	91	2	173	36	23	7	33	1.83
53998341--53998517	27	6.2	28	73	20	136	35	22	22	19	1.96
53998341--53998456	53	2.2	54	86	9	166	37	23	20	18	1.95
53998341--53998454	27	4.3	27	82	8	144	36	23	21	18	1.95
53998403--53998465	26	2.7	21	70	23	54	36	22	20	20	1.95
54000116--54000223	26	4.2	26	89	7	166	35	24	7	33	1.83
54002783--54002878	34	2.9	32	78	10	104	23	20	25	30	1.99
54004484--54004657	46	3.8	46	72	10	147	29	27	20	22	1.98
54004491--54004662	93	1.8	93	87	0	254	28	27	20	23	1.99
54004535--54004678	46	3.1	45	70	18	109	29	26	19	24	1.98
54006586--54006626	20	2.0	20	90	0	64	7	26	17	48	1.73
54009849--54010001	32	4.8	32	90	0	229	37	20	20	22	1.95
54012546--54012612	35	1.9	35	84	0	89	50	14	1	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54017297--54017407	27	4.1	27	85	5	136	36	21	24	17	1.94
54018598--54018630	16	2.1	16	94	0	57	54	6	33	6	1.50
54022017--54022208	40	4.8	40	88	1	199	28	27	20	24	1.99
54021997--54022207	80	2.7	80	79	8	223	29	27	19	23	1.99
54036507--54036628	43	2.8	43	77	9	133	32	25	18	22	1.97
54042705--54042771	34	1.9	35	85	8	93	19	25	11	43	1.85
54045853--54045983	65	2.0	65	96	0	244	42	19	14	23	1.88
54049203--54049269	34	1.9	35	85	8	93	19	23	11	44	1.84
54053030--54053151	51	2.4	51	91	0	190	29	25	12	32	1.92
54060862--54060973	49	2.2	51	90	3	174	29	23	14	33	1.94
54068533--54068646	51	2.2	51	92	0	183	29	23	14	32	1.94
54076729--54076872	42	3.4	42	84	0	171	29	23	13	33	1.93
54086872--54087145	40	6.9	39	87	2	343	24	27	22	25	2.00
54086872--54087142	80	3.4	80	89	1	384	24	28	22	24	2.00
54095014--54095284	40	6.8	40	92	1	420	23	28	23	23	1.99
54104619--54104650	7	4.4	7	92	7	55	87	0	0	12	0.54
54104619--54104650	15	2.2	15	94	5	57	87	0	0	12	0.54
54116266--54116379	57	2.0	57	91	0	183	28	8	27	35	1.86
54121824--54122068	56	4.4	56	86	1	341	36	22	11	28	1.90
54125188--54125378	56	3.4	56	86	0	229	33	23	13	30	1.92
54130829--54131039	27	7.8	27	89	0	296	29	21	8	40	1.82
54130910--54131076	27	6.2	27	83	2	93	31	23	8	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54130829--54131068	54	4.4	54	86	0	282	30	22	8	39	1.83
54130816--54131076	81	3.2	81	82	1	254	32	22	8	37	1.83
54131069--54131131	27	2.4	26	78	7	74	39	20	7	31	1.81
54131121--54131425	27	11.3	27	83	0	358	37	18	19	25	1.94
54131643--54131712	25	2.8	25	97	0	131	22	27	25	24	2.00
54131646--54131723	25	3.1	25	74	17	72	24	24	26	24	2.00
54133745--54133982	27	8.8	27	89	0	296	30	21	7	41	1.79
54133745--54134010	81	3.3	81	84	1	318	31	21	6	40	1.78
54133880--54134019	27	5.2	27	84	0	100	36	23	4	35	1.75
54133963--54134026	27	2.3	27	83	2	92	40	25	3	31	1.71
54134065--54134387	27	12.0	27	87	0	421	35	18	20	25	1.95
54134590--54134672	25	3.4	25	88	1	105	28	21	25	24	1.99
54141757--54141797	20	2.2	20	86	8	59	58	2	21	17	1.50
54143124--54143268	40	3.6	40	91	1	211	23	24	26	24	2.00
54143124--54143287	80	2.0	80	86	4	224	23	23	27	25	2.00
54143127--54143285	40	4.0	40	88	3	196	24	23	26	25	2.00
54144760--54144982	122	1.8	121	94	1	394	39	12	19	29	1.87
54152645--54152676	9	3.7	9	95	4	57	21	21	12	43	1.86
54161159--54161274	44	2.7	43	79	4	133	36	23	16	24	1.94
54161408--54161531	41	3.0	42	90	2	205	30	19	22	27	1.98
54164108--54164149	21	2.0	21	81	9	50	45	14	2	38	1.58
54173057--54173229	46	3.7	46	74	13	183	23	21	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54173054--54173224	93	1.8	93	92	0	288	22	22	27	27	1.99
54180638--54180810	46	3.7	46	75	14	185	23	21	26	28	1.99
54180635--54180805	93	1.8	93	92	2	290	22	21	27	28	1.99
54203587--54203629	19	2.2	20	83	8	61	13	23	30	32	1.93
54203597--54203638	19	2.2	19	100	0	84	11	26	30	30	1.92
54206407--54206446	20	2.0	20	85	9	55	27	25	20	27	1.99
54214786--54214846	30	2.0	30	87	3	86	37	19	8	34	1.82
54216491--54216611	60	2.0	60	95	0	215	33	25	4	35	1.78
54216715--54216803	44	2.0	44	95	0	160	34	15	6	42	1.74
54220351--54220457	5	19.8	5	84	12	65	73	0	1	24	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311