genome.fa.s12.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  130  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43799967--43800019	18	2.8	18	78	16	54	49	0	0	50	1.00
43799945--43800023	28	2.7	29	70	16	74	44	1	0	54	1.08
43813129--43813397	49	5.6	48	71	11	167	23	30	18	27	1.98
43813100--43813348	93	2.6	95	78	9	242	24	29	18	27	1.98
43813129--43813398	142	1.9	142	84	6	359	24	30	18	27	1.98
43816224--43816255	15	2.1	15	100	0	64	28	6	40	25	1.79
43819382--43819519	71	1.9	71	89	2	215	26	21	20	31	1.97
43829271--43829344	31	2.4	31	97	0	139	31	12	13	43	1.81
43829319--43829451	50	2.6	52	82	5	173	33	14	12	39	1.84
43831696--43831790	44	2.1	45	88	1	138	36	27	13	22	1.92
43835851--43836034	40	4.7	40	81	7	191	24	21	27	26	1.99
43835903--43836057	79	2.0	79	83	7	199	25	20	27	26	1.99
43843822--43844005	40	4.6	39	82	9	203	23	22	28	25	1.99
43843874--43844038	79	2.1	79	82	4	199	25	21	27	26	1.99
43846732--43846766	12	2.9	12	91	0	52	11	14	20	54	1.70
43846988--43847052	23	2.8	23	79	6	69	35	6	13	44	1.69
43847909--43847974	13	5.1	13	74	7	62	31	4	22	40	1.74
43853388--43853426	18	2.2	18	100	0	78	28	17	5	48	1.68
43857496--43857566	20	3.3	20	68	21	63	40	5	4	49	1.46
43857497--43857566	22	3.2	22	66	22	65	40	5	4	50	1.46
43857495--43857584	44	2.0	44	97	0	171	40	10	4	45	1.58
43857643--43857710	28	2.4	30	83	11	81	25	19	2	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43857665--43857727	30	2.1	30	85	5	83	31	19	1	47	1.59
43858864--43858923	24	2.4	25	97	2	113	31	5	6	56	1.47
43874655--43874713	30	2.0	29	86	3	82	33	23	6	35	1.82
43878986--43879047	31	2.0	31	87	0	88	27	27	1	43	1.64
43879903--43879944	21	2.0	21	85	0	57	21	16	40	21	1.91
43882157--43882216	30	2.0	30	86	0	84	30	25	8	36	1.85
43892479--43892606	28	4.5	28	87	2	148	28	13	25	32	1.93
43892505--43892606	28	3.6	28	92	2	168	30	11	24	33	1.91
43906520--43906598	37	2.1	37	88	0	113	26	31	17	24	1.97
43906717--43906928	47	4.5	47	92	0	334	28	30	8	32	1.86
43913785--43913955	93	1.8	93	88	2	263	30	29	18	21	1.97
43913777--43913943	46	3.6	45	74	10	167	31	29	16	21	1.96
43917057--43917081	13	1.9	13	100	0	50	56	0	8	36	1.29
43917063--43917128	28	2.4	28	85	5	91	45	3	16	34	1.63
43920092--43920134	16	2.4	18	77	18	54	44	0	0	55	0.99
43920786--43920829	23	2.0	22	86	13	63	63	4	4	27	1.33
43926661--43926705	13	3.5	13	87	0	63	44	22	8	24	1.81
43926717--43926792	13	5.5	13	76	14	53	27	9	22	40	1.84
43926717--43926777	31	2.0	31	96	0	113	27	9	21	40	1.85
43936013--43936270	40	6.5	40	91	2	378	22	23	28	25	1.99
43939903--43940056	76	2.0	76	100	0	308	29	18	25	26	1.98
43945548--43945669	45	2.7	45	81	11	142	35	14	22	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43945546--43945676	23	5.7	23	74	8	115	35	15	22	27	1.94
43949659--43949816	56	2.8	56	80	0	190	30	6	15	46	1.72
43956105--43956148	19	2.3	19	81	14	54	59	2	0	38	1.10
43956108--43956185	10	8.8	9	71	21	58	62	2	1	33	1.17
43956117--43956183	33	2.0	34	85	11	93	62	2	1	32	1.19
43961974--43962025	17	2.9	18	77	8	61	65	0	0	34	0.93
43961974--43962033	18	3.2	19	76	21	56	66	0	0	33	0.92
43961993--43962047	26	2.1	26	83	6	67	72	1	1	23	1.04
43969318--43969450	56	2.4	54	88	3	187	33	22	15	29	1.94
43969779--43969808	15	2.0	15	93	0	51	50	13	0	36	1.42
43971373--43971459	34	2.6	33	81	5	102	33	25	21	19	1.97
43975319--43975502	39	4.6	41	82	11	206	24	22	27	25	2.00
43975319--43975502	79	2.3	80	83	8	225	24	22	27	25	2.00
43975372--43975535	78	2.1	79	83	7	201	26	21	27	25	1.99
43983264--43983448	79	2.3	81	83	7	227	24	22	27	24	2.00
43983265--43983448	40	4.6	40	82	9	207	25	22	27	24	2.00
43983317--43983481	79	2.1	79	83	6	201	26	21	27	24	1.99
43988892--43989064	46	3.7	46	80	10	199	22	20	27	29	1.99
43988889--43989059	93	1.8	93	92	0	288	22	21	28	28	1.99
43995776--43995943	46	3.6	46	77	10	189	22	19	27	30	1.98
43996169--43996206	19	2.0	20	85	15	53	36	0	23	39	1.55
43996319--43996549	48	4.9	48	73	7	222	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44005267--44005399	56	2.4	56	88	0	194	27	14	22	35	1.93
44008848--44008942	48	2.0	48	89	4	147	24	17	28	29	1.97
44008866--44008985	48	2.5	48	82	5	127	27	19	26	26	1.99
44014372--44015272	450	2.0	449	93	0	1525	33	12	19	33	1.90
44015821--44015957	48	2.9	47	84	4	157	27	16	27	28	1.97
44021248--44021364	43	2.7	43	80	6	121	36	21	14	27	1.92
44028714--44028889	51	3.5	49	82	6	228	31	26	17	24	1.97
44034944--44035041	40	2.4	41	86	3	137	26	15	28	29	1.96
44040147--44040265	60	2.0	60	94	0	211	36	21	10	31	1.88
44045054--44045411	46	7.7	46	79	11	383	21	20	28	28	1.98
44045051--44045409	93	3.9	91	79	10	340	21	20	28	28	1.98
44045055--44045406	139	2.5	139	96	0	643	21	20	29	28	1.98
44050321--44050496	46	3.8	45	78	15	189	21	20	28	30	1.98
44050317--44050488	93	1.8	93	91	2	283	20	20	29	29	1.98
44053372--44053440	15	4.6	15	83	0	84	11	17	13	57	1.64
44053363--44053450	30	3.0	30	80	8	90	10	18	15	55	1.68
44055360--44055535	46	3.8	45	77	16	173	21	19	28	30	1.98
44055356--44055527	93	1.8	93	91	2	283	20	20	29	29	1.98
44057875--44058195	47	6.7	48	75	12	254	25	30	17	26	1.97
44057882--44058197	94	3.3	94	78	11	315	25	30	17	26	1.97
44065454--44065772	47	6.7	49	75	11	236	24	27	19	27	1.99
44065451--44065774	94	3.4	94	78	10	322	24	28	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44067444--44067521	27	2.9	27	88	0	84	32	8	21	37	1.85
44067500--44067671	27	6.4	27	87	0	254	41	8	19	30	1.80
44067471--44067671	81	2.5	81	88	0	267	40	8	19	31	1.82
44067674--44067765	27	3.4	27	82	5	114	29	8	22	39	1.84
44078043--44078138	43	2.3	42	89	5	140	25	12	28	34	1.92
44078447--44078481	17	2.1	17	89	5	54	37	14	20	28	1.91
44085836--44085884	22	2.2	22	92	0	80	10	32	30	26	1.89
44099820--44099932	6	18.3	6	67	18	63	46	13	18	21	1.82
44099834--44099901	25	2.7	25	90	0	109	47	13	19	20	1.82
44099829--44099932	31	3.6	29	79	15	99	47	12	19	21	1.82
44100292--44100354	27	2.3	27	81	5	74	38	23	20	17	1.93
44100334--44100582	27	9.3	27	87	0	338	23	21	20	34	1.97
44100537--44100637	27	3.7	27	85	5	116	29	12	19	37	1.89
44100673--44100856	27	6.8	27	84	2	244	40	7	21	30	1.80
44100673--44100856	81	2.3	81	89	3	273	40	7	21	30	1.80
44100866--44101015	27	5.6	27	81	3	167	29	7	21	42	1.80
44100862--44101014	81	1.9	81	83	1	189	30	7	22	40	1.80
44113926--44113968	22	2.0	22	90	0	68	20	23	23	32	1.98
44123116--44123212	47	2.1	47	96	0	176	42	24	6	26	1.78
44128713--44128815	37	2.8	37	89	0	152	23	32	20	24	1.98
44128956--44129188	48	4.9	48	95	0	412	30	27	7	35	1.84
44136382--44136643	39	6.6	40	83	8	245	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44136382--44136591	39	5.3	39	90	1	287	25	27	21	25	1.99
44138899--44138927	13	2.3	13	94	5	51	24	6	0	68	1.13
44151135--44151312	52	3.5	50	78	8	182	27	29	15	27	1.96
44151174--44151312	52	2.7	51	82	12	187	27	30	13	28	1.94
44155685--44155750	27	2.4	27	77	5	71	24	39	18	18	1.92
44159089--44159202	56	2.0	56	100	0	228	57	15	1	25	1.49
44168161--44168279	46	2.6	46	91	0	193	25	31	10	33	1.89
44168287--44168489	47	4.3	47	89	3	302	25	29	11	33	1.91
44168365--44168488	23	5.2	24	63	29	70	28	29	11	30	1.91
44168293--44168489	93	2.1	94	93	0	333	25	28	11	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311