genome.fa.s12.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  155  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52733248--52733309	26	2.3	27	81	10	83	37	25	8	29	1.85
52733415--52733527	27	4.2	27	88	3	149	19	23	22	34	1.96
52733414--52733523	55	2.0	55	87	5	161	20	23	20	35	1.96
52740093--52740123	13	2.4	13	94	0	53	32	32	25	9	1.88
52741603--52741726	42	2.9	42	80	7	142	29	23	15	31	1.95
52758036--52758117	39	2.1	39	86	0	110	24	31	20	23	1.98
52768978--52769209	49	4.7	49	83	2	275	26	18	25	29	1.98
52768977--52769217	99	2.4	101	82	2	290	26	18	25	29	1.98
52772228--52772292	15	4.4	15	74	16	64	10	13	12	63	1.53
52772224--52772292	30	2.3	31	80	14	83	10	13	15	60	1.58
52773489--52773630	44	3.3	43	75	14	141	30	23	19	26	1.98
52776178--52776248	26	2.7	26	93	0	115	28	25	19	26	1.99
52779395--52779563	93	1.8	91	87	2	248	29	26	20	24	1.99
52781919--52782011	29	3.2	30	80	8	95	58	15	16	10	1.64
52781933--52782002	15	4.7	15	77	10	81	57	12	18	11	1.65
52781935--52782011	15	5.2	15	75	9	77	55	15	16	11	1.68
52784939--52785109	93	1.8	93	89	2	272	29	28	20	21	1.98
52784934--52785106	46	3.7	47	76	10	185	30	27	20	21	1.98
52795791--52795895	28	3.7	29	80	9	137	22	32	18	26	1.97
52796118--52796160	16	2.8	15	82	6	59	4	18	23	53	1.63
52797888--52798055	46	3.6	46	76	14	175	30	28	19	22	1.97
52797895--52798065	93	1.8	93	87	2	254	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52799710--52799741	16	2.0	16	100	0	64	12	6	31	50	1.65
52811562--52811671	55	2.0	55	96	0	202	25	24	15	34	1.95
52819053--52819241	50	3.8	50	84	2	238	29	28	17	24	1.98
52826089--52826194	40	2.7	39	86	4	149	24	25	24	25	2.00
52834148--52834290	39	3.6	39	87	2	189	23	26	25	24	2.00
52836544--52836614	27	2.7	26	76	12	72	23	12	21	42	1.87
52844368--52844556	50	3.8	50	82	2	229	30	28	17	24	1.97
52855358--52855405	25	1.9	25	86	0	69	33	25	16	25	1.96
52855453--52855508	11	5.5	11	71	16	57	35	12	19	32	1.89
52855442--52855508	20	3.3	20	93	0	116	34	11	20	32	1.90
52855559--52855678	25	4.9	25	94	2	208	27	20	23	29	1.98
52855559--52855702	75	1.9	75	86	8	206	28	20	23	27	1.99
52863022--52863059	17	2.2	18	85	4	51	39	0	7	52	1.31
52863974--52864022	22	2.2	22	81	0	62	26	20	16	36	1.93
52872174--52872200	14	1.9	14	100	0	54	29	18	14	37	1.91
52874928--52874993	20	3.3	20	89	4	107	48	16	9	25	1.76
52876230--52876391	27	6.0	28	72	7	120	27	10	22	38	1.87
52876235--52876394	54	2.9	55	70	3	137	27	10	23	38	1.87
52877373--52877479	53	2.0	53	100	0	214	32	28	16	22	1.96
52881542--52881621	28	2.8	29	78	14	87	28	33	16	21	1.95
52881845--52881892	16	3.0	16	78	0	60	18	12	20	47	1.81
52883944--52884114	93	1.8	93	94	0	306	28	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52883936--52884111	46	3.8	46	79	12	216	29	28	20	21	1.98
52892753--52892879	64	2.0	64	96	0	236	27	29	11	30	1.92
52893614--52893674	30	2.0	30	87	0	86	29	22	6	40	1.79
52895821--52896350	47	11.3	47	90	0	817	28	28	9	34	1.87
52899444--52899484	21	2.0	21	100	0	82	34	19	26	19	1.96
52901107--52901257	43	3.5	44	78	9	159	25	19	24	31	1.98
52901148--52901247	42	2.4	42	81	1	128	27	16	23	34	1.95
52904869--52905153	47	6.1	47	90	2	403	32	9	29	28	1.88
52905272--52905350	37	2.1	37	88	0	113	24	17	31	26	1.97
52916700--52916814	43	2.7	43	91	4	178	35	21	13	28	1.92
52922103--52922159	29	2.0	29	85	0	78	35	28	1	35	1.68
52925352--52925526	46	3.8	46	77	8	203	28	26	21	22	1.99
52925357--52925527	93	1.8	93	92	2	290	28	28	21	22	1.99
52925945--52926005	30	2.0	30	90	0	95	31	24	8	36	1.85
52928638--52928800	43	3.8	43	76	4	132	32	26	17	23	1.96
52952943--52953082	42	3.3	42	79	7	111	27	17	25	30	1.98
52952943--52953101	43	3.7	43	73	10	119	25	18	26	30	1.98
52955621--52955684	33	2.0	33	84	9	87	28	26	20	25	1.99
52955998--52956054	26	2.2	26	81	9	62	28	19	17	35	1.94
52958287--52958314	3	9.3	3	100	0	56	64	0	0	35	0.94
52958305--52958363	24	2.5	23	78	8	64	55	3	1	38	1.26
52962445--52962523	27	3.0	27	88	1	115	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52962510--52962632	27	4.6	27	88	3	124	41	22	7	28	1.80
52962535--52962767	81	2.9	80	77	10	233	40	22	9	27	1.85
52962534--52962767	27	8.7	27	81	6	208	41	22	9	26	1.85
52962789--52962844	27	2.1	27	82	0	67	35	14	12	37	1.84
52962895--52962968	27	2.8	26	81	6	87	31	21	22	24	1.99
52963114--52963192	27	2.9	27	84	0	104	21	22	21	34	1.97
52964485--52964546	31	2.0	31	96	0	115	37	6	22	33	1.80
52965482--52965518	10	3.6	10	89	7	56	37	0	2	59	1.12
52971234--52971303	27	2.6	27	95	2	113	31	28	12	27	1.93
52971234--52971330	28	3.5	28	90	4	135	31	27	13	26	1.94
52979316--52979382	27	2.5	26	95	2	89	32	26	11	28	1.92
52979316--52979410	28	3.4	28	89	2	129	32	27	12	27	1.93
52984602--52984644	20	2.2	20	100	0	86	37	11	18	32	1.87
52984609--52984652	20	2.2	20	91	0	70	34	11	22	31	1.90
52984696--52984839	24	6.0	24	85	9	188	29	22	21	26	1.99
52990944--52991254	40	7.8	40	87	2	412	24	27	23	25	2.00
52998318--52998508	40	4.8	40	88	1	267	24	27	21	26	2.00
53002583--53002639	9	5.9	9	73	15	51	35	8	21	35	1.84
53002581--53002643	20	3.2	20	95	0	117	36	12	19	31	1.89
53002695--53002789	24	4.0	24	91	2	147	29	22	21	27	1.99
53005422--53005451	15	2.0	15	93	0	51	26	0	16	56	1.40
53008882--53008942	30	2.0	30	83	0	77	31	22	8	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53013325--53013385	30	2.0	30	83	0	77	31	22	8	37	1.84
53015243--53015382	43	3.3	42	74	10	149	31	27	17	24	1.97
53019372--53019467	39	2.5	39	89	3	149	31	30	20	17	1.96
53019821--53019861	19	2.2	19	90	0	64	39	7	0	53	1.29
53020611--53020693	15	5.7	15	80	8	91	59	16	14	9	1.61
53021761--53021798	14	2.7	14	95	0	67	26	10	0	63	1.27
53025167--53025284	43	2.8	43	75	12	118	29	24	15	30	1.95
53027446--53027634	50	3.7	51	82	2	191	31	26	16	25	1.96
53035340--53035632	27	10.9	27	75	8	116	41	19	8	31	1.80
53035365--53035560	54	3.6	54	79	2	207	42	20	7	29	1.80
53035340--53035623	81	3.5	80	76	8	254	42	19	7	30	1.79
53035473--53035628	54	2.9	54	79	5	145	43	16	8	31	1.78
53036107--53036162	22	2.5	22	75	11	60	21	26	19	32	1.97
53047723--53047775	26	2.0	26	100	0	106	43	18	7	30	1.78
53057102--53057225	47	2.6	48	85	5	162	25	16	29	29	1.96
53066886--53067036	74	2.0	77	96	3	281	45	21	5	28	1.73
53067493--53067543	25	1.9	27	88	11	79	43	11	9	35	1.75
53074432--53074545	47	2.5	44	84	9	140	27	19	29	23	1.98
53074432--53074545	45	2.5	45	84	9	151	27	19	29	23	1.98
53078219--53078443	40	5.7	40	86	6	271	25	22	27	24	2.00
53078272--53078476	80	2.6	80	83	6	213	26	20	27	24	1.99
53078219--53078449	119	1.9	119	81	6	279	25	22	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53086122--53086346	40	5.7	40	86	6	280	24	22	28	24	2.00
53086122--53086352	119	1.9	119	82	6	288	25	22	28	24	1.99
53094240--53094311	34	2.1	34	97	0	135	36	30	20	12	1.90
53096822--53096938	29	4.0	29	81	4	110	24	14	32	28	1.95
53096827--53096960	58	2.4	56	79	5	144	26	15	32	26	1.96
53098227--53098497	46	5.8	46	74	11	155	23	28	19	28	1.98
53102694--53102817	43	3.0	43	81	5	139	30	21	16	30	1.96
53110685--53110846	52	3.2	52	88	5	224	22	23	16	37	1.93
53110697--53110870	24	7.0	24	78	12	163	22	21	16	39	1.92
53122347--53122496	67	2.2	67	81	8	171	32	17	28	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311