genome.fa.s12.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  136  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46097263--46097718	47	9.8	45	76	9	326	23	29	18	28	1.98
46097263--46097718	94	4.9	94	76	10	400	23	29	18	28	1.98
46097263--46097713	187	2.4	187	93	1	764	23	29	18	28	1.98
46097263--46097712	140	3.2	137	80	6	433	24	28	18	28	1.98
46118924--46119328	47	8.6	47	94	1	675	28	29	8	33	1.86
46118974--46119052	25	3.3	25	66	16	76	31	29	5	34	1.79
46123354--46123784	40	10.8	40	95	0	747	25	29	21	23	1.99
46123354--46123784	199	2.2	200	93	0	747	25	29	21	23	1.99
46125197--46125600	47	8.6	47	93	1	657	28	30	7	33	1.86
46125247--46125325	25	3.3	25	66	16	76	31	29	5	34	1.79
46132066--46132167	42	2.4	43	83	6	127	28	24	19	27	1.99
46133480--46133567	29	3.0	29	83	3	104	40	14	22	21	1.90
46142899--46143106	48	4.3	48	80	6	215	30	18	25	26	1.98
46142895--46143106	96	2.2	96	82	5	250	29	18	25	26	1.98
46148800--46149083	116	2.4	117	82	2	340	37	12	27	22	1.90
46148800--46149095	29	10.2	29	78	5	224	37	13	27	22	1.91
46155563--46155600	20	1.9	20	88	0	58	18	13	31	36	1.89
46158833--46158869	18	2.0	19	85	15	51	72	5	16	5	1.21
46163942--46163970	14	2.0	15	93	6	51	51	20	0	27	1.47
46164321--46164483	43	3.8	42	73	13	118	31	25	17	25	1.97
46165581--46165605	13	1.9	13	100	0	50	40	24	4	32	1.73
46171825--46171936	19	5.8	19	86	9	156	37	9	16	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46171825--46171922	36	2.6	37	88	9	144	38	9	16	35	1.80
46175154--46175178	13	1.9	13	100	0	50	40	24	4	32	1.73
46178300--46178493	47	4.1	47	89	0	280	33	10	28	26	1.90
46178329--46178400	22	3.1	22	64	24	58	33	13	29	23	1.93
46178466--46178647	98	1.9	96	93	4	312	35	7	26	30	1.84
46178466--46178647	48	3.8	48	91	4	303	35	7	26	30	1.84
46178793--46178900	37	2.9	37	91	0	171	23	17	31	27	1.97
46183531--46183642	27	4.2	26	81	10	118	17	24	22	35	1.95
46183531--46183642	54	2.1	54	85	6	147	17	24	22	35	1.95
46192343--46192403	30	2.0	30	83	0	77	31	22	8	37	1.84
46194254--46194425	87	2.0	87	96	2	319	30	26	18	23	1.98
46198829--46198889	30	2.0	30	83	0	77	29	22	8	39	1.83
46202269--46202329	30	2.0	30	87	0	86	39	6	22	31	1.80
46205622--46205733	27	4.1	28	78	12	101	16	22	22	38	1.93
46210945--46211047	28	3.7	27	77	10	100	24	11	33	30	1.91
46213126--46213217	43	2.1	43	91	0	148	5	22	4	67	1.30
46222451--46222592	42	3.4	42	80	0	158	30	26	13	28	1.94
46236838--46236944	56	1.9	57	94	1	189	24	9	14	51	1.72
46242861--46243061	40	5.0	40	88	2	271	25	27	23	22	2.00
46250912--46251112	40	5.0	40	90	2	289	25	28	22	22	1.99
46258835--46258860	12	2.2	12	100	0	52	34	7	30	26	1.85
46267433--46267484	21	2.9	17	72	22	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46267439--46267481	21	2.0	21	90	0	68	46	0	0	53	1.00
46270470--46270510	4	10.2	4	100	0	82	24	0	24	51	1.49
46275022--46275159	70	2.0	70	100	0	276	30	8	28	31	1.87
46278590--46278632	15	2.9	15	82	10	52	23	0	4	72	1.04
46279976--46280031	27	2.1	27	86	6	78	25	14	21	39	1.91
46281451--46281630	48	3.8	48	78	8	213	27	17	28	26	1.98
46281441--46281628	96	2.0	96	91	0	304	27	16	28	27	1.97
46284088--46284150	16	4.1	15	79	6	72	41	7	25	25	1.82
46284362--46284486	57	2.2	57	80	11	132	53	4	0	41	1.25
46290207--46290473	121	2.2	122	86	0	365	29	26	13	31	1.94
46290207--46290480	61	4.5	61	79	4	284	29	25	13	31	1.94
46290208--46290480	122	2.2	121	86	0	366	29	26	13	31	1.93
46293710--46293818	58	1.9	57	86	5	157	26	30	15	27	1.96
46293710--46293836	29	4.4	29	82	1	139	26	31	15	25	1.96
46298795--46298834	18	2.2	19	90	4	64	22	27	25	25	2.00
46301383--46301501	29	4.2	28	82	10	118	25	31	14	28	1.94
46303733--46303809	33	2.3	33	91	4	120	16	6	31	45	1.73
46304270--46304303	11	3.2	11	83	8	52	52	0	26	20	1.46
46306530--46306610	26	3.2	25	72	6	74	22	20	17	39	1.92
46306639--46306706	26	2.6	26	97	0	127	16	23	22	38	1.93
46310064--46310237	46	3.7	48	81	7	173	21	28	20	29	1.98
46328798--46329071	43	6.4	43	87	2	297	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46328798--46329071	86	3.2	85	85	5	329	34	24	17	23	1.96
46329056--46329156	43	2.3	43	81	5	114	31	20	16	30	1.95
46334689--46334831	9	15.2	9	78	8	142	31	0	20	46	1.56
46334678--46334831	39	4.3	37	75	20	123	31	0	20	47	1.55
46334676--46334831	48	3.2	48	82	2	188	31	0	21	46	1.56
46335024--46335497	240	2.0	233	93	3	815	32	14	18	34	1.91
46339876--46339928	28	1.9	27	85	11	72	35	5	3	54	1.42
46340330--46340369	21	1.9	21	84	0	53	27	0	25	47	1.52
46340695--46340791	40	2.4	40	81	6	99	24	25	22	26	2.00
46361378--46361420	21	2.0	21	82	8	52	53	2	2	41	1.26
46361631--46361679	25	1.9	26	84	12	66	42	2	8	46	1.45
46361794--46362082	146	2.0	145	81	6	343	42	8	7	40	1.64
46364856--46364928	37	2.0	37	97	0	137	26	32	17	23	1.97
46365082--46365213	48	2.7	48	92	2	210	29	28	8	34	1.86
46365182--46365307	47	2.7	47	92	0	207	25	29	11	33	1.92
46369604--46369830	95	2.4	94	82	6	258	29	26	17	26	1.98
46373828--46373880	25	2.1	26	85	3	72	56	1	15	26	1.49
46375625--46375702	33	2.4	33	80	6	88	23	21	15	39	1.91
46378985--46379192	55	3.8	54	79	6	233	36	15	25	23	1.94
46378992--46379192	108	1.8	110	85	4	282	35	16	24	23	1.95
46379431--46379461	16	1.9	16	93	0	53	41	0	22	35	1.54
46391050--46391369	48	6.6	48	83	5	265	26	17	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46391050--46391369	96	3.3	96	81	4	367	26	17	29	27	1.98
46391050--46391381	144	2.3	148	78	6	354	27	17	28	26	1.98
46401956--46402242	48	5.9	48	86	1	315	23	18	30	27	1.97
46405742--46405784	19	2.2	20	83	4	52	37	2	18	41	1.63
46405859--46405917	30	1.9	31	89	3	93	33	8	25	32	1.86
46417384--46417527	40	3.6	41	85	2	170	23	27	25	24	2.00
46429006--46429261	39	6.6	39	88	1	318	23	22	24	29	1.99
46437105--46437329	39	5.8	40	82	9	236	23	20	25	30	1.99
46437145--46437329	39	4.7	39	91	0	280	23	20	25	31	1.98
46438545--46438682	49	2.8	49	83	5	152	23	26	21	28	1.99
46438702--46438877	94	1.9	94	80	7	205	24	26	17	31	1.97
46441678--46441713	18	2.0	18	94	0	63	30	22	5	41	1.76
46444215--46444301	29	3.0	29	83	8	106	29	32	10	27	1.90
46444226--46444346	29	4.2	28	79	8	100	29	28	12	28	1.93
46444200--46444334	58	2.4	57	78	6	148	28	29	14	27	1.95
46451518--46451625	29	3.8	29	81	3	121	26	30	14	27	1.95
46451550--46451670	29	4.2	28	81	4	98	28	28	13	30	1.94
46456493--46456850	47	7.6	47	93	1	581	29	30	8	32	1.86
46456543--46456621	25	3.3	25	66	16	76	31	29	5	34	1.79
46456493--46456850	190	1.9	188	93	1	617	29	30	8	32	1.86
46460831--46461248	39	10.8	40	89	6	614	25	28	21	24	1.99
46460831--46461248	79	5.4	80	87	7	614	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46461509--46461773	47	5.6	47	94	3	476	29	29	7	33	1.85
46461509--46461773	96	2.8	94	95	3	485	29	29	7	33	1.85
46464878--46465000	46	2.6	48	85	5	162	21	30	19	28	1.98
46465695--46466482	390	2.0	390	99	0	1567	34	18	12	35	1.88
46468813--46468892	40	2.0	40	97	0	151	51	22	13	12	1.75
46475362--46475414	24	2.4	24	85	14	71	49	0	0	50	1.00
46480763--46480801	20	2.0	20	89	0	60	10	38	20	30	1.86
46482394--46482420	13	2.1	13	100	0	54	37	22	14	25	1.93
46485860--46486074	46	4.6	46	81	6	173	22	27	19	30	1.98
46485904--46486069	46	3.6	46	85	6	194	23	27	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311