genome.fa.s12.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  135  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45731495--45731558	28	2.3	28	83	0	74	26	14	26	32	1.94
45738751--45738826	40	1.9	40	86	0	107	23	17	27	31	1.97
45739736--45739806	27	2.6	27	77	4	81	39	18	7	35	1.78
45739790--45739931	27	5.3	27	86	0	185	35	14	20	28	1.92
45740774--45740834	25	2.4	25	83	0	77	18	21	13	47	1.82
45740795--45740865	19	3.8	19	80	10	92	18	22	12	46	1.82
45740817--45740882	6	10.8	6	77	9	71	19	19	12	48	1.80
45740789--45740882	37	2.5	37	91	0	134	20	21	11	46	1.82
45742289--45742504	40	5.5	40	85	7	273	23	28	24	24	2.00
45742289--45742502	119	1.8	118	83	7	290	23	28	23	24	2.00
45748157--45748294	42	3.2	42	77	10	136	23	12	26	37	1.90
45748213--45748306	42	2.2	42	82	1	107	26	14	25	32	1.95
45757727--45757825	42	2.4	42	80	0	126	24	27	27	21	1.99
45758596--45758620	13	1.9	13	100	0	50	68	8	0	24	1.16
45766832--45767014	39	4.6	39	81	6	201	24	21	28	25	1.99
45766879--45767047	79	2.2	77	82	7	198	27	19	27	25	1.99
45776457--45776648	40	4.8	40	81	7	196	25	22	27	25	2.00
45776457--45776641	79	2.3	81	83	7	227	24	22	27	25	2.00
45776510--45776674	79	2.1	79	83	6	201	26	21	26	25	1.99
45776866--45777224	47	7.6	47	91	4	569	32	8	29	29	1.87
45777343--45777421	37	2.1	37	83	4	97	26	17	29	26	1.98
45785360--45785400	21	2.0	21	85	9	57	36	4	29	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45785854--45785887	17	2.0	17	94	0	59	20	17	8	52	1.71
45793128--45793174	24	2.0	24	91	0	76	34	29	12	23	1.92
45793138--45793198	24	2.5	24	89	0	86	31	34	14	19	1.92
45798872--45799022	41	3.6	43	72	10	132	31	29	14	25	1.95
45805447--45805571	29	4.3	29	91	1	198	30	30	14	24	1.95
45805781--45805832	16	3.2	16	91	0	77	19	17	11	51	1.75
45812685--45812906	39	5.6	40	80	9	219	25	22	27	25	2.00
45812688--45812906	79	2.8	78	80	9	239	25	21	27	25	1.99
45820659--45820882	40	5.7	39	85	7	283	24	22	28	25	1.99
45820659--45820915	79	3.3	79	83	7	229	25	21	28	24	1.99
45830339--45830367	14	2.1	14	93	6	51	68	6	0	24	1.13
45830777--45830844	23	3.3	23	63	26	60	25	2	63	8	1.38
45830773--45830850	39	2.0	39	97	0	147	26	2	62	7	1.35
45830981--45831038	21	2.7	21	81	10	73	31	0	1	67	1.01
45830983--45831052	26	2.6	25	80	15	68	30	0	2	67	1.05
45832893--45833005	54	2.1	54	96	0	208	39	13	16	30	1.87
45835504--45835561	24	2.3	24	85	5	71	36	3	1	58	1.25
45835466--45835814	26	13.8	26	69	14	171	30	6	3	60	1.37
45835897--45835955	28	2.2	26	81	6	64	32	3	3	61	1.29
45835892--45835950	26	2.3	24	76	18	57	28	3	3	64	1.26
45839028--45839128	45	2.2	45	87	0	139	41	16	16	24	1.89
45841184--45841252	25	2.7	26	80	11	79	26	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45849106--45849155	25	2.0	25	96	0	91	48	2	16	34	1.57
45850142--45850286	75	1.9	74	98	1	281	22	20	19	38	1.93
45854910--45854942	11	2.9	12	86	13	52	33	0	0	66	0.92
45854943--45854983	18	2.2	20	86	8	59	65	9	0	24	1.22
45855066--45855125	30	2.0	30	86	0	84	58	8	1	31	1.38
45855158--45855200	22	2.0	22	86	9	61	60	9	9	20	1.55
45861298--45861447	48	3.1	48	82	1	176	27	22	24	26	2.00
45869020--45869136	43	2.7	43	93	0	189	26	20	24	28	1.99
45869119--45869254	47	2.9	48	82	2	148	30	24	21	24	1.99
45868986--45869254	43	5.8	48	77	6	177	27	22	23	26	2.00
45875692--45875782	32	2.8	32	78	6	85	28	26	18	26	1.98
45877379--45877455	24	3.2	24	90	0	127	19	37	5	37	1.74
45883579--45883659	33	2.4	35	77	10	96	29	23	18	28	1.98
45883971--45884023	26	2.0	26	82	7	63	20	15	22	41	1.89
45885280--45885371	24	3.8	24	92	1	139	21	35	5	36	1.77
45886736--45886893	43	3.7	43	79	6	169	27	25	20	25	1.99
45886736--45886894	85	1.9	85	85	2	221	27	25	20	25	1.99
45906168--45906297	43	3.0	43	78	6	154	23	17	29	30	1.97
45911828--45912000	40	4.3	40	91	1	258	23	21	27	27	1.99
45911775--45912000	80	2.8	80	84	6	262	23	22	26	26	2.00
45911775--45912000	120	1.9	120	83	5	296	23	22	26	26	2.00
45911856--45912019	40	4.1	40	86	6	129	24	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45911849--45912033	80	2.3	80	84	4	223	25	20	26	27	1.99
45917358--45917398	17	2.4	17	91	0	64	78	0	4	17	0.93
45929915--45929939	13	1.9	13	100	0	50	32	24	40	4	1.73
45937854--45937974	43	2.8	44	76	5	122	32	22	16	28	1.96
45948577--45948617	20	2.2	20	86	8	59	31	21	0	46	1.52
45951929--45951970	20	2.1	20	100	0	84	19	30	4	45	1.71
45953503--45953574	36	2.0	36	97	0	135	23	25	18	33	1.97
45957032--45957203	42	4.0	43	72	10	129	22	16	25	36	1.94
45957046--45957142	44	2.3	43	83	7	117	21	18	25	34	1.96
45961494--45961637	40	3.6	40	89	0	216	25	28	22	22	1.99
45961482--45961678	80	2.5	82	79	8	235	25	27	22	23	1.99
45966693--45966959	29	9.2	29	75	9	177	38	11	25	24	1.89
45966688--45966959	58	4.7	58	80	4	224	38	12	25	24	1.90
45973209--45973433	40	5.7	40	84	7	248	25	26	22	26	2.00
45973209--45973433	79	2.8	78	79	11	242	25	26	22	26	2.00
45984161--45984405	49	4.9	49	84	3	328	28	27	18	25	1.98
45984174--45984405	100	2.3	98	87	2	338	28	28	18	25	1.98
45986314--45986401	28	3.1	28	91	4	133	29	28	13	28	1.94
45990276--45990365	29	3.1	29	90	4	130	31	27	13	27	1.94
45994112--45994229	28	4.1	29	84	3	143	28	27	16	27	1.97
45996284--45996402	44	2.7	44	86	0	175	27	21	22	28	1.99
46001402--46001442	21	2.0	21	85	9	57	19	43	14	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46011259--46011288	15	2.0	15	93	0	51	50	33	13	3	1.58
46015043--46015089	14	3.5	13	83	13	51	2	12	4	80	0.94
46015044--46015089	21	2.1	22	88	4	67	2	10	4	82	0.89
46017162--46017390	29	7.9	29	84	0	280	39	12	27	19	1.88
46020208--46020286	3	26.7	3	75	7	63	25	3	3	67	1.25
46022616--46022792	40	4.4	40	84	4	225	23	23	27	25	2.00
46028774--46028944	40	4.3	40	82	5	204	23	21	26	28	1.99
46034216--46034262	24	1.9	24	82	4	58	6	4	8	80	1.00
46040496--46040592	49	2.0	49	97	0	185	42	14	16	26	1.87
46042023--46042086	30	2.2	29	94	2	110	26	17	21	34	1.95
46046963--46047015	26	2.0	26	85	7	72	20	16	22	39	1.92
46048269--46048345	24	3.2	24	86	0	118	19	36	5	38	1.74
46050170--46050279	42	2.6	41	82	2	121	38	20	12	28	1.90
46051014--46051055	21	2.0	21	95	0	75	30	19	7	42	1.78
46053700--46053749	25	2.0	25	100	0	100	52	20	8	20	1.71
46061334--46061364	15	2.1	15	100	0	62	32	0	12	54	1.38
46061336--46061364	8	3.8	8	90	9	51	34	0	13	51	1.42
46062199--46062403	42	4.9	42	75	7	173	33	22	12	31	1.91
46062199--46062435	84	2.8	84	80	8	232	34	22	12	30	1.91
46062266--46062438	42	4.1	42	78	8	199	35	23	12	29	1.91
46065446--46065545	47	2.2	46	82	8	114	47	13	8	32	1.71
46068123--46068156	16	2.1	16	88	5	50	5	23	5	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46069848--46069872	9	2.8	9	100	0	50	52	0	24	24	1.48
46073654--46073841	96	2.0	96	85	0	259	33	14	20	31	1.93
46076795--46076848	22	2.5	22	87	3	74	12	31	37	18	1.89
46078251--46078560	46	6.6	45	76	13	220	29	18	29	23	1.97
46078302--46078663	48	7.6	48	75	11	236	27	17	29	25	1.98
46078254--46078663	48	8.7	48	73	14	191	28	17	29	24	1.98
46086252--46086476	40	5.6	39	84	5	229	26	27	21	24	1.99
46086252--46086477	80	2.8	78	82	6	265	26	27	21	24	1.99
46086252--46086477	120	1.9	120	83	3	294	26	27	21	24	1.99
46094237--46094462	40	5.7	40	88	5	280	26	27	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311