genome.fa.s12.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  108  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35654643--35654783	75	1.9	75	83	2	185	30	14	10	44	1.79
35659282--35659341	30	2.0	30	87	6	86	40	6	25	28	1.80
35661621--35661652	16	2.0	16	93	0	55	34	18	0	46	1.49
35661852--35662190	50	6.7	50	74	6	272	30	24	17	26	1.97
35661855--35662044	101	1.9	101	89	0	299	30	23	18	27	1.98
35661907--35662197	151	1.9	151	90	0	465	31	25	16	26	1.97
35662544--35662590	19	2.3	20	82	10	60	48	14	0	36	1.44
35665915--35665949	17	2.1	16	89	5	52	34	0	0	65	0.93
35665913--35665954	6	7.2	6	86	5	50	33	0	0	66	0.92
35665919--35665984	27	2.3	29	79	12	73	37	1	0	60	1.06
35665971--35666051	40	2.0	40	85	0	108	24	2	9	62	1.38
35667153--35667183	16	2.0	16	93	6	55	38	0	0	61	0.96
35667844--35667913	13	5.2	13	71	8	52	37	1	2	58	1.22
35667860--35667945	42	2.1	42	95	2	156	43	2	2	52	1.26
35670178--35670218	22	1.9	22	95	5	75	17	29	43	9	1.80
35679438--35679525	30	2.9	30	77	0	104	28	15	27	28	1.96
35681768--35681852	30	2.8	30	80	7	109	12	21	1	64	1.34
35681828--35681852	12	2.1	12	100	0	50	8	16	0	76	1.02
35681855--35681885	12	2.6	12	100	0	62	25	16	12	45	1.83
35681933--35681993	16	4.1	15	74	14	54	9	13	1	75	1.12
35683402--35683514	32	3.5	33	78	8	115	35	8	11	44	1.72
35694507--35694734	49	4.6	49	86	1	294	25	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35697424--35697491	5	11.7	6	71	22	56	51	2	1	44	1.25
35697424--35697549	20	6.9	18	69	21	68	52	3	2	42	1.30
35697475--35697550	37	2.1	36	83	11	93	53	2	2	40	1.28
35699085--35699112	6	4.7	6	100	0	56	32	17	32	17	1.94
35699097--35699173	33	2.3	32	78	8	91	24	23	25	25	2.00
35699583--35699616	17	1.9	17	88	5	50	14	44	29	11	1.81
35699580--35699623	18	2.4	18	77	7	54	20	43	25	11	1.85
35707060--35707183	23	5.5	22	71	10	99	25	20	18	35	1.95
35707034--35707185	45	3.4	44	79	8	146	26	20	17	35	1.95
35707060--35707187	45	2.8	45	79	6	152	25	21	17	35	1.95
35712958--35712982	13	1.9	13	100	0	50	40	8	0	52	1.31
35715771--35715844	27	2.7	27	83	6	87	25	10	25	37	1.88
35716135--35716203	28	2.4	29	83	7	97	28	31	15	23	1.95
35727090--35727467	188	2.0	189	99	0	749	33	28	12	25	1.92
35729504--35729568	29	2.2	29	91	0	112	26	15	27	30	1.96
35733182--35733224	19	2.2	20	95	4	79	30	0	20	48	1.50
35744782--35744866	29	3.0	29	87	1	118	27	15	30	27	1.96
35746986--35747016	15	2.1	15	100	0	62	41	6	12	38	1.69
35753208--35753494	143	2.0	143	100	0	574	40	9	14	34	1.79
35755166--35755210	22	2.0	23	82	8	56	31	8	8	51	1.64
35755203--35755242	20	2.0	20	85	9	55	37	17	7	37	1.78
35755749--35755775	10	2.7	10	100	0	54	33	0	37	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35760146--35760212	27	2.5	27	97	0	125	25	22	16	35	1.94
35760229--35760308	27	3.0	27	92	0	133	36	16	16	31	1.91
35772708--35772749	17	2.5	17	84	0	57	9	26	40	23	1.85
35772807--35772921	29	4.0	28	82	2	122	27	16	28	26	1.97
35772820--35772930	57	1.9	58	85	1	152	27	17	29	26	1.97
35775698--35775956	45	5.9	45	83	9	279	24	22	27	25	2.00
35775698--35775869	89	1.9	89	90	2	274	22	24	26	26	2.00
35775700--35775901	89	2.3	89	86	5	268	22	23	28	25	2.00
35780536--35780849	46	6.7	46	82	9	320	24	30	18	26	1.97
35780536--35780848	94	3.3	93	83	9	340	23	30	18	26	1.97
35793742--35793825	28	3.0	29	85	3	118	28	29	15	26	1.96
35794557--35794593	16	2.2	17	90	4	58	13	2	29	54	1.53
35797185--35797258	27	2.7	27	85	6	96	35	17	18	28	1.94
35797185--35797276	27	3.4	26	83	7	94	33	16	20	29	1.94
35802388--35802612	40	5.7	40	86	5	296	24	22	28	25	2.00
35802388--35802645	119	2.2	119	81	6	283	25	21	27	24	1.99
35805086--35805310	40	5.6	40	81	1	236	23	26	24	26	2.00
35815493--35815546	22	2.5	21	79	8	63	38	14	11	35	1.82
35815605--35815646	13	3.0	14	86	6	50	40	14	0	45	1.45
35825465--35825636	46	3.8	45	80	11	215	21	21	27	29	1.99
35825462--35825631	92	1.8	92	96	0	313	21	21	28	28	1.99
35828811--35828867	28	2.0	28	96	0	105	45	14	5	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35829148--35829404	45	5.9	45	77	8	208	32	27	16	22	1.96
35829183--35829404	45	5.0	45	80	4	213	34	26	16	22	1.95
35829236--35829404	89	1.9	89	85	0	230	34	26	15	23	1.94
35829949--35829979	15	2.1	15	93	0	53	51	25	3	19	1.62
35830493--35830521	14	2.0	15	93	6	51	48	20	0	31	1.50
35838520--35838747	38	5.9	38	82	3	215	22	21	25	31	1.98
35840550--35840613	30	2.1	30	91	0	101	25	26	12	35	1.91
35840605--35840830	30	7.6	30	75	6	138	20	26	12	41	1.87
35840605--35840676	29	2.4	30	90	4	110	16	27	11	44	1.82
35840725--35840781	29	2.0	29	89	0	87	15	26	14	43	1.85
35840600--35840824	119	1.9	120	85	2	319	20	26	12	39	1.89
35840753--35840859	30	3.5	31	78	3	110	21	23	12	42	1.86
35840916--35840947	12	2.4	14	90	10	50	59	3	0	37	1.13
35850704--35850763	27	2.2	27	84	0	75	40	21	21	16	1.92
35850890--35850954	27	2.5	27	85	5	80	27	23	20	29	1.98
35850905--35851098	27	7.4	27	80	9	186	24	18	20	36	1.95
35854513--35854686	46	3.8	45	78	12	183	21	21	28	28	1.98
35860315--35860382	28	2.4	29	90	2	102	25	13	32	29	1.93
35863113--35863332	46	4.7	46	80	6	223	27	20	29	23	1.98
35863110--35863339	92	2.5	91	81	8	279	27	20	28	23	1.99
35865111--35865175	26	2.4	27	76	2	69	32	21	23	23	1.98
35865904--35865963	27	2.3	26	85	2	75	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35873233--35873292	27	2.3	26	85	2	75	21	23	20	35	1.96
35884400--35884630	40	5.8	40	89	3	304	25	21	27	25	1.99
35884400--35884630	81	2.9	80	87	3	295	25	21	27	25	1.99
35884400--35884630	121	1.9	120	86	3	329	25	21	27	25	1.99
35892844--35893071	40	5.8	40	91	3	327	25	21	28	24	1.99
35892844--35893071	79	2.9	79	89	3	318	25	21	28	24	1.99
35901359--35901587	40	5.8	40	90	1	318	25	21	27	24	1.99
35920381--35920424	12	3.7	12	78	0	52	36	13	36	13	1.85
35929000--35929039	17	2.2	19	83	16	50	30	5	25	40	1.77
35929146--35929226	29	2.8	29	75	14	76	25	13	18	41	1.87
35929672--35929788	62	1.9	61	86	5	166	50	5	4	39	1.47
35937833--35938048	40	5.4	40	92	2	314	25	27	22	24	2.00
35944685--35944899	40	5.4	40	91	3	321	25	27	22	24	2.00
35944685--35944899	79	2.7	79	90	4	319	25	27	22	24	2.00
35944685--35944899	119	1.8	119	87	8	321	25	27	22	24	2.00
35947329--35947466	48	3.0	47	72	10	131	29	23	20	26	1.99
35952995--35953045	21	2.4	21	93	0	84	15	9	52	21	1.71
35963493--35963667	46	3.8	46	78	14	207	20	20	29	29	1.98
35963490--35963660	92	1.8	93	94	1	308	21	21	29	28	1.98
35969263--35969440	39	4.5	39	96	1	320	29	29	19	21	1.98
35969263--35969440	79	2.3	78	97	1	329	29	29	19	21	1.98
35977606--35977786	40	4.5	40	93	2	285	30	29	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35980003--35980048	19	2.4	19	92	0	74	26	21	6	45	1.76
35983652--35983788	43	3.2	42	72	10	109	27	24	19	27	1.99
35989249--35989275	11	2.5	11	100	0	54	29	0	14	55	1.40
36004756--36004816	30	2.0	30	83	0	77	31	22	8	37	1.84
36008078--36008243	46	3.6	46	81	10	166	28	20	28	22	1.98
36015730--36015951	46	4.8	47	80	3	218	27	19	29	23	1.98
36015730--36015998	92	2.9	93	76	10	239	27	19	28	23	1.98
36020730--36020781	26	2.0	25	85	3	68	59	9	9	21	1.57
36023575--36023669	17	5.2	17	77	14	91	18	36	23	21	1.95
36025397--36025574	39	4.5	39	92	3	270	28	28	24	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311