genome.fa.s12.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  216  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73946117--73946163	23	2.0	23	91	0	76	44	14	2	38	1.58
73946121--73946170	23	2.2	23	85	0	64	50	12	2	36	1.51
73948465--73948509	22	2.0	22	95	0	81	35	13	24	26	1.92
73950482--73950533	25	2.1	25	85	0	68	36	9	15	38	1.80
73956889--73956924	18	2.1	17	89	5	54	66	0	0	33	0.92
73956918--73957012	32	3.4	27	70	28	83	44	0	1	54	1.07
73956923--73956997	14	5.2	14	71	23	50	44	0	1	54	1.08
73958473--73958511	19	2.1	18	90	4	60	61	0	2	35	1.10
73964049--73964089	21	1.9	22	85	5	57	41	9	14	34	1.79
73969786--73969995	105	2.0	106	98	0	404	39	12	10	37	1.78
73970756--73970800	23	1.9	24	86	4	65	26	2	4	66	1.22
73982744--73982810	19	3.5	19	76	13	66	34	2	0	62	1.10
73984383--73984415	17	1.9	18	88	11	52	45	0	12	42	1.41
73987548--73987765	104	2.1	104	92	0	355	17	27	25	29	1.97
73989330--73989416	18	4.9	17	88	8	106	79	1	1	18	0.86
73989356--73989416	6	10.2	6	100	0	122	81	0	0	18	0.68
73995805--73995867	27	2.3	26	76	10	63	50	11	0	38	1.38
73995834--73995863	15	2.0	15	93	0	51	40	10	0	50	1.36
73997369--73997486	51	2.2	53	85	4	150	17	22	20	39	1.92
73997607--73997694	18	4.9	18	75	5	79	35	13	15	35	1.87
73997700--73997756	18	3.2	18	78	9	62	35	7	19	38	1.79
73998548--73998665	43	2.8	41	78	5	119	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73999832--73999870	20	2.0	20	94	0	69	23	38	28	10	1.87
74005677--74005741	20	3.2	20	76	8	69	32	20	30	16	1.95
74012273--74012313	21	2.0	21	90	0	64	51	21	12	14	1.75
74012302--74012422	42	2.9	42	75	0	134	41	16	22	19	1.90
74012302--74012422	21	5.8	21	67	3	73	41	16	22	19	1.90
74013670--74013709	5	8.0	5	100	0	80	60	0	0	40	0.97
74013777--74013801	13	1.9	13	100	0	50	76	0	24	0	0.80
74014360--74014422	30	2.1	30	91	5	101	58	9	4	26	1.49
74024239--74024272	17	2.0	17	94	0	59	14	14	47	23	1.82
74024343--74024410	18	4.1	17	73	19	72	17	29	38	14	1.90
74024348--74024425	31	2.5	31	89	0	120	19	29	35	15	1.92
74027608--74027641	17	1.9	17	88	5	50	55	26	0	17	1.42
74039631--74039686	27	2.1	27	100	0	112	0	7	25	67	1.15
74040920--74040965	24	1.9	24	86	8	67	36	2	2	58	1.22
74041373--74041406	12	2.8	12	83	16	52	41	0	5	52	1.25
74041458--74041494	18	2.1	18	89	0	56	43	0	2	54	1.14
74042866--74042906	19	2.2	19	87	12	59	46	0	24	29	1.53
74046670--74046703	6	5.7	6	90	10	52	14	2	0	82	0.79
74049387--74049432	19	2.4	19	92	0	83	21	39	23	15	1.92
74055882--74055940	27	2.2	27	87	0	91	35	16	22	25	1.95
74057314--74057352	18	2.2	17	86	13	53	33	0	20	46	1.51
74057457--74057485	8	3.6	8	100	0	58	24	13	27	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74057572--74057647	23	3.3	23	92	0	134	21	19	26	32	1.97
74060544--74060584	6	6.7	6	91	8	57	14	4	0	80	0.87
74061302--74061347	18	2.6	18	89	3	67	15	26	43	15	1.85
74064365--74064408	23	1.9	23	90	0	70	36	13	27	22	1.92
74072242--74072289	20	2.4	19	80	10	51	33	8	10	47	1.68
74077594--74077730	25	5.5	25	84	4	143	23	27	18	30	1.98
74077586--74077717	50	2.6	50	81	0	174	23	27	17	31	1.97
74080159--74080244	31	2.8	31	83	1	111	23	25	17	33	1.96
74080462--74080531	25	2.8	25	93	0	122	25	22	25	25	2.00
74080574--74080621	20	2.7	17	82	17	62	35	18	12	33	1.89
74080589--74080639	11	4.9	11	81	11	63	33	19	11	35	1.88
74080586--74080627	20	2.1	20	100	0	84	35	19	9	35	1.84
74088227--74088304	31	2.5	31	87	0	111	20	26	21	30	1.98
74088613--74088667	11	5.5	10	79	12	60	34	20	9	36	1.84
74092823--74092887	26	2.5	26	87	2	87	24	18	18	38	1.93
74100642--74101242	312	1.9	314	86	3	845	40	14	15	28	1.88
74102954--74103000	21	2.2	22	88	3	69	68	8	10	12	1.40
74106130--74106260	42	3.1	42	98	0	253	35	6	27	30	1.83
74107699--74107773	20	3.8	19	81	10	80	40	1	6	52	1.36
74108378--74108421	19	2.3	19	92	0	70	31	13	22	31	1.93
74108386--74108423	19	2.0	19	100	0	76	26	15	26	31	1.96
74108510--74108563	21	2.5	21	93	3	90	59	7	3	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74108518--74108620	10	10.2	10	70	16	70	57	4	1	35	1.31
74108529--74108630	20	5.1	19	80	11	98	57	5	0	35	1.29
74108550--74108629	39	2.1	39	86	9	110	56	6	0	37	1.25
74108564--74108618	27	2.0	27	83	13	69	54	5	0	40	1.23
74108518--74108632	21	5.7	20	81	4	106	57	5	1	35	1.31
74110054--74110087	16	2.1	16	88	0	50	35	2	2	58	1.28
74116163--74116210	25	2.0	25	91	4	80	52	4	0	43	1.20
74116802--74116966	43	3.9	43	83	2	190	31	21	14	32	1.94
74116811--74116966	85	1.8	85	81	2	197	31	21	14	33	1.93
74117343--74117395	21	2.5	21	84	0	61	0	41	20	37	1.53
74120700--74120732	17	1.9	17	93	0	57	24	42	0	33	1.55
74125314--74125353	21	1.9	21	94	0	71	55	12	12	20	1.69
74133871--74133932	30	2.1	30	93	0	106	35	19	16	29	1.93
74136045--74136267	40	5.6	39	83	5	232	24	20	28	26	1.99
74136120--74136302	79	2.3	80	81	1	217	25	20	28	25	1.99
74143957--74144179	40	5.6	39	83	5	232	24	20	28	26	1.99
74144032--74144214	79	2.3	80	81	1	217	25	20	28	25	1.99
74148495--74148539	22	2.0	22	100	0	90	40	4	13	42	1.64
74161420--74161498	27	3.0	27	88	5	108	3	25	0	70	1.03
74164022--74164063	21	2.0	20	82	13	50	47	19	0	33	1.49
74169280--74169320	21	2.0	21	90	0	64	24	14	43	17	1.86
74177689--74177733	19	2.3	20	88	11	67	15	4	20	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74186309--74186445	68	2.0	68	87	2	195	37	18	10	32	1.86
74195521--74195572	26	2.0	26	100	0	104	34	15	19	30	1.93
74195521--74195585	26	2.5	26	90	5	87	38	13	20	27	1.90
74195814--74195953	39	3.6	39	82	0	181	37	22	25	14	1.92
74196459--74196487	9	3.2	9	100	0	58	31	10	0	58	1.31
74197794--74197832	20	2.0	20	85	10	53	74	0	7	17	1.05
74198839--74198889	26	2.0	26	92	0	84	19	21	21	37	1.95
74205335--74205386	23	2.2	24	96	3	97	50	3	28	17	1.64
74206439--74206537	40	2.6	38	74	6	108	17	11	35	36	1.85
74212802--74212834	8	4.2	8	88	3	50	33	0	0	66	0.92
74212960--74212997	18	2.2	18	90	4	60	60	7	0	31	1.25
74212985--74213027	15	2.9	15	86	3	52	69	11	2	16	1.28
74215707--74215861	42	3.7	42	87	5	206	27	25	16	30	1.96
74218743--74218999	129	2.0	129	98	0	496	33	22	12	32	1.91
74230779--74230807	3	9.7	3	100	0	58	0	31	34	34	1.58
74231186--74231228	2	21.5	2	100	0	86	0	48	0	51	1.00
74232090--74232214	66	1.9	66	88	0	187	25	16	7	51	1.69
74233537--74233570	11	2.8	12	86	13	52	26	0	0	73	0.83
74233544--74233571	11	2.5	11	100	0	56	25	0	0	75	0.81
74233693--74233756	31	2.1	31	91	2	103	57	14	3	25	1.51
74237923--74237961	16	2.4	16	91	4	60	38	12	2	46	1.56
74238933--74238970	16	2.4	16	90	0	58	31	5	0	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74241663--74241687	13	1.9	13	100	0	50	8	36	32	24	1.84
74245801--74245851	23	2.2	23	79	6	59	41	5	0	52	1.25
74246914--74246963	21	2.4	21	79	0	55	62	6	4	28	1.37
74247592--74247645	26	2.0	27	92	3	92	55	3	1	38	1.28
74247598--74247659	26	2.4	25	78	7	70	54	4	1	38	1.31
74247740--74247779	21	1.9	21	89	0	62	52	5	10	32	1.56
74248542--74248582	13	3.2	13	86	6	57	51	0	48	0	1.00
74248549--74248587	13	3.1	13	88	3	62	48	0	51	0	1.00
74257570--74257617	15	3.0	16	84	9	62	58	2	0	39	1.10
74258004--74258066	29	2.1	32	82	8	78	42	4	9	42	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311