genome.fa.s12.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  171  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58229889--58229935	17	2.8	16	81	15	51	25	2	6	65	1.27
58229907--58229972	11	5.5	11	79	12	60	27	3	3	66	1.21
58230072--58230315	126	1.9	126	94	0	434	29	17	14	37	1.90
58241915--58242563	176	3.7	176	94	0	1118	29	19	22	29	1.98
58242443--58242540	43	2.2	45	82	10	132	32	18	19	29	1.96
58242401--58242639	131	1.8	132	82	4	313	27	20	21	31	1.98
58243905--58243939	15	2.2	16	95	5	63	31	0	5	62	1.18
58244510--58244584	37	2.0	37	89	0	114	28	50	1	20	1.56
58244563--58244598	18	2.0	18	94	0	63	22	58	0	19	1.40
58244666--58244709	11	4.0	11	87	0	52	27	0	31	40	1.56
58256676--58256703	11	2.5	11	100	0	56	28	21	0	50	1.49
58268748--58268964	47	4.7	46	77	11	139	23	30	17	27	1.97
58276062--58276095	17	1.9	18	88	5	52	38	5	5	50	1.51
58280100--58280132	18	1.9	17	88	11	50	30	15	12	42	1.83
58280907--58281020	27	3.9	28	72	19	81	25	26	20	28	1.99
58281707--58281746	8	5.0	8	81	0	53	2	20	22	55	1.56
58281710--58281746	16	2.3	16	95	0	65	2	18	18	59	1.50
58283388--58283416	15	1.9	15	100	0	58	58	0	0	41	0.98
58303020--58303167	28	5.3	28	92	1	226	27	11	27	34	1.91
58303045--58303183	28	5.0	27	91	2	109	29	11	25	33	1.91
58305204--58305435	49	4.7	49	83	4	313	29	26	18	25	1.98
58305204--58305435	100	2.3	99	86	4	333	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58307442--58307613	93	1.8	93	88	0	263	19	19	30	30	1.97
58307454--58307620	46	3.6	46	76	13	171	19	18	31	31	1.96
58315208--58315256	23	2.2	23	85	3	64	42	22	18	16	1.88
58315449--58315482	17	2.0	17	100	0	68	23	17	5	52	1.66
58318359--58318396	20	1.9	20	100	0	76	44	21	26	7	1.79
58322160--58322223	28	2.3	28	88	0	92	15	23	23	37	1.93
58322174--58322236	28	2.2	28	82	0	72	23	26	15	33	1.95
58327524--58327571	24	1.9	26	91	8	82	54	0	6	39	1.26
58327535--58327571	11	3.0	13	76	15	51	51	0	5	43	1.24
58334676--58334768	43	2.1	44	80	9	111	23	17	26	32	1.96
58336169--58336338	94	1.8	93	88	2	227	54	12	17	15	1.72
58339847--58339923	37	2.1	36	92	2	127	24	19	12	42	1.86
58340693--58340880	95	2.0	96	89	1	288	52	11	18	17	1.74
58343184--58343312	41	3.1	41	86	4	179	21	18	22	37	1.94
58343184--58343329	41	3.5	40	86	5	166	20	18	23	37	1.94
58346437--58346490	25	2.2	25	96	0	99	46	1	29	22	1.62
58348832--58348945	62	1.9	59	85	5	156	51	5	4	38	1.44
58348928--58348976	20	2.7	18	77	22	57	51	4	2	42	1.32
58352676--58352885	43	4.9	43	82	1	206	31	22	18	27	1.97
58352676--58352882	85	2.4	85	80	0	207	32	21	17	28	1.96
58352859--58352957	42	2.3	43	75	6	103	21	15	22	41	1.90
58356754--58356990	50	4.7	50	82	4	255	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58356769--58356995	101	2.3	99	83	6	271	28	25	19	26	1.99
58358897--58358983	42	2.1	42	93	0	147	27	28	24	19	1.98
58359998--58360083	23	3.8	23	69	4	68	34	20	19	24	1.96
58364305--58364566	9	30.0	9	71	14	103	35	1	17	45	1.58
58364318--58364541	87	2.6	87	97	1	425	36	1	15	45	1.57
58364492--58364591	52	2.0	50	90	4	155	34	0	18	48	1.48
58366323--58366362	19	2.1	19	85	0	53	32	0	42	25	1.55
58366498--58366825	123	2.7	122	82	0	368	31	19	15	33	1.93
58367289--58367328	7	5.7	7	87	0	53	45	32	0	22	1.53
58367286--58367328	14	3.1	14	86	0	59	41	37	0	20	1.53
58367462--58367494	12	2.6	13	85	4	50	33	51	0	15	1.43
58367498--58367559	22	2.9	22	80	7	65	53	30	1	14	1.51
58367596--58367634	15	2.7	15	84	4	53	48	28	5	17	1.68
58367698--58367809	41	2.8	41	85	4	140	17	24	19	38	1.93
58377868--58378336	104	4.5	104	85	1	530	30	19	21	29	1.97
58377819--58378336	208	2.5	207	83	3	592	30	18	21	29	1.97
58379934--58380100	43	3.9	42	79	7	176	32	24	13	28	1.94
58382672--58382860	43	4.4	43	87	4	265	31	28	18	21	1.97
58382672--58382860	85	2.2	86	87	2	265	31	28	18	21	1.97
58388090--58388217	14	8.9	14	68	4	67	35	38	0	25	1.62
58388229--58388333	7	14.7	7	69	15	54	46	26	1	24	1.63
58388242--58388277	15	2.5	14	82	8	54	47	30	0	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58388208--58388305	22	4.6	21	78	6	81	46	27	2	23	1.63
58388647--58388753	40	2.7	40	82	0	115	28	20	21	28	1.98
58388661--58388755	40	2.4	40	83	0	118	31	20	20	28	1.97
58388806--58388922	40	2.9	40	81	7	139	28	21	21	29	1.98
58392446--58392480	17	2.1	17	100	0	70	45	31	5	17	1.71
58394624--58394844	40	5.6	40	78	3	225	24	25	24	25	2.00
58399751--58399788	20	1.9	19	89	5	58	15	7	2	73	1.17
58399782--58399832	23	2.2	24	82	10	61	29	5	0	64	1.17
58402641--58402791	43	3.5	43	85	2	196	33	24	13	28	1.94
58406253--58406280	13	2.2	13	100	0	56	32	0	21	46	1.52
58418190--58418216	14	1.9	14	100	0	54	37	29	0	33	1.58
58419700--58419730	15	2.1	15	93	0	53	51	25	3	19	1.62
58422927--58423043	41	2.8	42	75	13	116	29	25	18	26	1.98
58423042--58423147	56	1.9	56	92	0	176	32	23	16	27	1.96
58426055--58426107	24	2.3	23	86	3	70	49	13	24	13	1.77
58426055--58426107	8	6.8	8	78	2	54	49	13	24	13	1.77
58426315--58426434	29	4.2	29	82	3	127	27	12	29	30	1.93
58430616--58430654	16	2.4	17	95	4	71	48	38	5	7	1.54
58432134--58432230	29	3.3	29	83	0	113	27	8	31	31	1.86
58439260--58439310	26	2.0	26	100	0	102	29	23	23	23	1.99
58444109--58444602	27	18.3	26	79	10	414	27	22	8	41	1.83
58444120--58444595	54	8.9	52	85	6	569	28	22	8	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58444123--58444602	81	5.9	81	86	4	639	27	22	8	41	1.83
58444610--58444801	27	7.1	27	79	4	199	34	18	19	27	1.95
58444613--58444802	54	3.5	54	85	1	220	34	18	20	27	1.95
58445001--58445083	27	3.1	26	87	5	112	19	21	21	37	1.94
58445394--58445467	27	2.8	26	81	6	85	16	24	22	36	1.94
58445585--58445771	6	30.8	6	72	16	145	20	17	12	49	1.79
58445585--58445771	30	6.4	30	82	9	215	20	17	12	49	1.79
58445585--58445771	85	2.2	85	94	0	329	20	17	12	49	1.79
58445705--58445792	12	7.3	12	75	10	63	20	12	13	53	1.72
58448415--58448447	16	2.1	17	88	11	52	30	0	6	63	1.18
58448749--58448868	43	2.8	43	81	7	136	25	15	28	30	1.96
58452386--58452598	48	4.4	48	98	0	417	34	7	27	30	1.84
58452771--58452873	37	2.8	37	96	0	188	23	20	32	24	1.98
58456089--58456414	27	12.1	27	83	2	377	28	21	8	41	1.83
58456092--58456415	81	4.0	81	88	2	454	28	21	8	41	1.83
58456424--58456601	27	6.6	27	88	2	232	35	18	19	26	1.94
58456431--58456603	54	3.2	54	89	0	256	35	19	19	26	1.95
58456819--58456901	27	3.1	27	84	8	107	20	20	21	37	1.95
58457212--58457285	27	2.8	27	85	6	89	18	22	20	37	1.94
58457428--58457565	6	22.8	6	74	15	124	21	16	13	49	1.79
58457404--58457572	61	2.8	61	90	0	259	21	17	12	49	1.79
58457404--58457565	30	5.3	30	88	5	227	21	17	12	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58459973--58460057	40	2.1	40	84	4	109	27	18	20	34	1.96
58467779--58467862	40	2.1	40	88	0	123	23	20	22	33	1.97
58469311--58469574	46	5.7	46	74	15	188	29	19	26	23	1.98
58470730--58470769	21	2.0	20	90	5	62	15	40	22	22	1.91
58471832--58471908	6	12.5	6	70	15	50	48	14	18	19	1.82
58471832--58471908	31	2.5	31	82	0	109	48	14	18	19	1.82
58472045--58472146	27	3.8	26	81	5	105	37	21	22	18	1.94
58472045--58472146	54	1.9	53	82	6	125	37	21	22	18	1.94
58472305--58472369	22	3.0	22	75	8	69	33	21	23	21	1.97
58472796--58472988	27	7.3	26	85	5	219	24	21	19	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311