genome.fa.s12.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  122  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40624434--40624732	120	2.5	122	79	10	330	26	26	21	25	1.99
40638640--40638835	40	4.9	40	91	1	297	27	27	22	22	1.99
40659243--40659278	10	3.5	10	92	7	63	33	19	19	27	1.96
40664646--40664688	22	2.0	22	100	0	86	25	18	13	41	1.88
40666466--40666504	10	3.8	10	93	6	69	33	17	17	30	1.94
40666465--40666504	21	1.9	21	100	0	80	35	17	17	30	1.93
40676239--40676269	6	5.2	6	100	0	62	51	16	0	32	1.44
40677398--40677512	45	2.6	43	79	5	122	33	26	13	26	1.94
40682957--40683026	25	2.8	25	86	0	95	25	22	22	28	1.99
40683231--40683389	27	5.9	27	87	0	210	25	21	18	34	1.96
40683379--40683506	54	2.4	54	81	3	143	29	9	19	41	1.83
40683472--40683706	81	2.9	81	83	2	222	38	6	21	32	1.80
40683499--40683709	27	7.8	27	87	2	253	39	6	22	31	1.79
40683381--40683748	27	13.7	27	78	4	125	35	7	21	36	1.81
40683499--40683734	54	4.4	54	80	2	249	38	6	22	32	1.80
40686120--40686170	25	2.1	25	85	3	68	29	19	19	31	1.97
40686131--40686196	25	2.6	25	82	0	87	24	22	25	27	2.00
40686398--40686533	27	5.0	27	80	0	146	22	18	22	36	1.95
40686522--40686584	27	2.4	26	74	12	65	31	6	19	42	1.76
40686575--40686719	27	5.4	27	88	3	211	28	8	23	39	1.85
40686575--40686754	81	2.2	81	86	2	236	30	8	22	38	1.85
40686577--40686754	27	6.6	27	86	0	203	30	8	21	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40686679--40686946	81	3.3	81	81	3	270	38	8	20	32	1.84
40686722--40686932	27	7.8	27	91	0	314	41	9	20	29	1.83
40686719--40686970	81	3.1	80	82	4	299	39	9	19	31	1.83
40689340--40689417	25	3.2	25	85	3	97	26	17	21	33	1.96
40689347--40689416	25	2.8	25	89	2	106	25	20	24	30	1.99
40689619--40689752	27	5.0	27	85	0	178	24	20	20	34	1.97
40689798--40689950	54	2.8	54	84	4	175	30	8	20	40	1.82
40689798--40689950	27	5.7	26	81	8	155	30	8	20	40	1.82
40689742--40689950	27	7.8	27	75	8	151	31	9	19	39	1.83
40689718--40689964	54	4.6	54	74	13	170	31	10	20	38	1.86
40689901--40689964	27	2.4	27	86	0	101	31	7	23	37	1.83
40689757--40689962	81	2.5	80	79	6	218	32	9	20	38	1.84
40689943--40690126	27	6.8	27	87	0	242	42	7	20	29	1.79
40689916--40690126	54	3.9	54	83	3	255	41	8	19	30	1.81
40689916--40690126	81	2.6	80	79	6	255	41	8	19	30	1.81
40689944--40690126	81	2.3	81	87	0	276	42	7	19	30	1.79
40694004--40694035	16	2.0	16	93	0	55	34	18	0	46	1.49
40694235--40694629	50	7.9	50	73	5	296	31	26	17	25	1.97
40694238--40694627	151	2.6	151	92	0	629	32	25	17	24	1.97
40700510--40700579	27	2.6	27	95	2	113	31	28	12	27	1.93
40700510--40700607	28	3.5	28	90	2	135	31	28	13	26	1.94
40708465--40708534	27	2.6	27	95	2	113	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40708465--40708562	28	3.5	28	90	2	135	31	28	13	26	1.94
40712212--40712303	42	2.2	42	96	0	166	34	20	14	30	1.92
40713291--40713359	27	2.6	28	82	13	83	26	23	20	30	1.98
40713303--40713367	27	2.4	27	84	5	87	23	24	16	35	1.95
40713421--40713506	27	3.1	27	79	14	95	37	9	13	39	1.78
40713509--40713634	27	4.7	26	85	4	144	30	8	21	39	1.83
40713666--40713971	27	11.3	27	83	4	339	39	6	23	29	1.80
40716091--40716193	41	2.4	43	77	6	113	29	24	17	29	1.97
40716220--40716339	45	2.7	45	93	0	195	35	30	15	18	1.92
40718824--40718895	34	2.1	36	89	5	112	52	5	9	31	1.57
40730455--40730558	43	2.4	43	80	12	117	27	13	25	33	1.93
40732280--40732339	30	2.0	30	83	0	75	40	3	25	31	1.72
40733050--40733197	67	2.2	66	82	8	165	31	17	28	22	1.96
40733074--40733257	67	2.8	64	77	10	187	28	16	29	24	1.97
40736404--40736538	40	3.4	40	91	0	216	31	25	19	23	1.98
40744897--40744991	40	2.4	40	96	0	172	29	29	20	21	1.98
40753004--40753075	36	2.1	34	84	10	92	52	8	18	20	1.70
40754538--40754594	20	2.8	19	85	15	71	35	17	5	42	1.72
40754766--40754841	23	3.3	23	79	3	91	31	17	25	26	1.97
40754765--40754850	45	1.9	45	85	4	120	32	17	24	25	1.97
40757541--40757591	21	2.5	21	81	6	52	43	21	0	35	1.53
40758858--40758933	24	3.2	24	96	0	134	32	2	42	22	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40760309--40760419	27	4.2	26	86	5	132	17	23	22	36	1.94
40764752--40764924	93	1.9	93	91	0	283	26	29	22	21	1.99
40764745--40764920	46	3.8	46	74	7	185	27	28	22	21	1.99
40770747--40770789	23	1.9	23	85	4	61	6	11	18	62	1.50
40775016--40775101	20	4.3	20	75	16	72	46	2	18	32	1.62
40776319--40776445	43	3.0	44	84	4	179	28	14	26	30	1.95
40779940--40780105	46	3.6	45	78	11	167	25	30	16	27	1.97
40780025--40780155	47	2.8	47	78	12	119	23	29	18	28	1.98
40779940--40780155	94	2.3	92	81	8	233	25	29	17	28	1.97
40791539--40792434	452	2.0	451	94	0	1560	30	20	14	34	1.92
40800505--40800563	17	3.4	18	75	11	70	28	13	8	49	1.71
40811953--40811980	8	3.5	8	100	0	56	46	14	10	28	1.78
40814614--40814678	27	2.4	27	92	0	103	21	26	13	38	1.91
40814735--40814912	31	5.7	31	79	5	171	26	26	16	29	1.97
40814768--40814912	62	2.3	62	86	0	200	26	26	17	28	1.98
40814918--40815020	33	3.2	32	81	4	118	27	22	13	36	1.92
40824211--40824243	15	2.2	15	100	0	66	60	6	6	27	1.44
40824201--40824243	15	2.9	16	89	6	56	62	6	4	25	1.40
40824616--40824669	20	2.7	20	91	0	90	16	31	29	22	1.96
40832378--40832593	40	5.4	40	89	2	285	26	29	21	22	1.99
40841365--40841395	16	1.9	16	93	0	53	41	9	0	48	1.36
40845220--40845283	32	2.0	32	96	0	119	39	20	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40845633--40845671	20	2.0	20	89	0	60	38	10	12	38	1.78
40846713--40846737	11	2.3	11	100	0	50	44	20	8	28	1.79
40849536--40849585	17	3.0	16	78	18	57	70	2	4	24	1.15
40856080--40856252	43	4.0	43	80	8	199	23	16	27	31	1.96
40868364--40868488	46	2.7	46	94	0	214	20	23	28	28	1.99
40872498--40872534	8	4.6	8	86	0	56	5	24	18	51	1.67
40879356--40879425	25	2.8	25	84	0	86	32	18	24	24	1.97
40882011--40882072	24	2.6	22	75	10	52	32	4	16	46	1.68
40882116--40882160	19	2.3	21	77	14	51	24	40	0	35	1.56
40889927--40889987	30	2.1	29	93	3	104	26	14	22	36	1.93
40897167--40897227	30	2.1	29	90	3	95	24	16	22	36	1.94
40903686--40904236	47	11.6	47	93	2	861	32	8	29	29	1.87
40903686--40904236	192	2.9	192	94	1	941	32	8	29	29	1.87
40909209--40909377	46	3.6	45	74	15	139	32	21	24	21	1.98
40909390--40909520	50	2.7	48	83	8	151	25	19	29	25	1.98
40911524--40911702	85	2.1	85	98	0	349	37	8	27	26	1.85
40912968--40913287	49	6.7	49	93	3	544	33	8	28	30	1.86
40912968--40913287	96	3.3	95	94	1	534	33	8	28	30	1.86
40912968--40913287	145	2.2	144	93	2	552	33	8	28	30	1.86
40916886--40916933	25	1.9	25	86	0	69	31	22	16	29	1.96
40917064--40917135	26	2.8	25	85	6	99	26	22	23	27	1.99
40927863--40927910	25	1.9	25	86	0	69	31	18	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40927961--40927998	20	2.0	19	90	10	60	31	10	21	36	1.87
40928040--40928119	25	3.2	24	81	10	90	27	23	20	28	1.99
40928330--40928413	31	2.7	31	94	1	143	32	16	26	25	1.96
40936228--40936331	43	2.4	43	85	3	147	33	25	15	25	1.95
40936787--40936937	75	2.0	75	93	0	257	33	21	1	43	1.64
40939895--40940127	49	4.7	50	81	3	256	25	17	27	30	1.97
40939901--40940127	100	2.3	98	82	7	262	25	17	26	30	1.97
40948637--40948697	15	4.1	15	75	10	63	11	13	14	60	1.59
40960485--40960524	19	2.1	19	95	0	71	35	10	12	42	1.76
40965759--40965819	30	2.0	30	83	0	77	31	22	8	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311