genome.fa.s12.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  96  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31867883--31867936	25	2.2	25	83	3	65	38	16	7	37	1.77
31871267--31871480	42	5.0	42	70	15	179	29	24	21	24	1.99
31871216--31871480	85	3.1	85	85	2	345	29	24	20	25	1.99
31871223--31871463	43	5.7	42	72	11	161	28	25	19	26	1.99
31873920--31873958	6	6.5	6	100	0	78	66	15	17	0	1.25
31874530--31874643	6	18.3	6	70	20	56	74	1	18	5	1.09
31874525--31874594	20	3.3	21	80	13	72	78	1	17	2	0.94
31874524--31874575	12	4.4	12	78	2	52	82	0	15	1	0.75
31876233--31876261	13	2.3	13	94	5	51	55	24	0	20	1.44
31878892--31878995	43	2.4	43	90	3	154	33	21	15	29	1.94
31881072--31881128	25	2.3	25	87	3	80	33	1	40	24	1.66
31882525--31882630	27	3.9	26	86	7	140	16	24	22	35	1.95
31882523--31882645	54	2.3	54	84	2	167	16	26	22	34	1.95
31892490--31892549	25	2.5	24	86	5	84	36	1	40	21	1.64
31893944--31894048	27	3.9	26	82	7	120	17	22	21	38	1.93
31899529--31899627	43	2.3	43	96	0	180	32	21	16	30	1.95
31905071--31905126	17	3.3	17	65	9	51	21	5	46	26	1.73
31905062--31905131	34	2.1	34	100	0	140	24	8	44	22	1.81
31909412--31909461	21	2.5	20	87	6	73	18	22	20	40	1.92
31909685--31909709	13	1.9	13	100	0	50	28	0	8	64	1.22
31911855--31911895	19	2.1	20	95	4	75	70	4	24	0	1.06
31914007--31914062	21	2.7	21	88	2	78	16	23	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31919811--31919850	11	3.6	11	86	0	62	10	5	7	77	1.11
31920228--31920267	14	2.9	14	88	0	53	50	7	32	10	1.64
31925349--31925425	26	3.0	26	78	0	82	40	18	19	22	1.92
31925434--31925525	20	4.6	20	81	0	112	35	26	22	15	1.94
31940714--31940807	25	3.8	25	87	4	129	26	22	24	26	2.00
31941010--31941173	27	6.0	27	87	0	229	22	20	21	35	1.96
31941014--31941180	54	3.1	54	91	0	262	22	19	19	37	1.94
31941164--31941224	27	2.3	26	80	8	70	32	11	16	39	1.84
31941176--31941367	81	2.4	81	83	1	224	30	9	19	40	1.84
31941201--31941367	27	6.2	27	82	2	192	29	9	20	40	1.84
31941320--31941569	81	3.1	81	86	0	212	38	8	22	30	1.85
31941361--31941610	27	9.3	27	91	0	383	40	8	22	28	1.84
31943835--31943898	33	1.9	33	100	0	128	40	23	9	26	1.85
31951163--31951187	13	1.9	13	100	0	50	52	24	0	24	1.48
31951176--31951284	55	2.0	56	92	1	184	34	21	13	30	1.92
31951857--31951887	15	2.1	15	93	0	53	54	25	0	19	1.44
31953881--31954052	43	4.0	43	75	17	151	23	16	26	33	1.96
31954159--31954198	19	2.1	19	95	0	71	25	7	15	52	1.68
31957777--31957959	67	2.8	64	80	8	192	23	31	16	28	1.96
31958681--31958741	30	2.0	30	83	0	77	31	22	8	37	1.84
31967114--31967212	42	2.3	42	81	8	121	25	18	25	31	1.97
31970142--31970359	40	5.5	40	86	2	271	26	27	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31976312--31976408	40	2.4	40	86	3	133	23	30	23	21	1.99
31979891--31980117	68	3.5	65	76	14	166	24	28	16	31	1.96
31982208--31982447	119	2.0	120	95	0	428	32	20	18	29	1.96
31985246--31985379	6	21.8	6	74	15	105	46	15	17	20	1.84
31985248--31985348	37	2.7	37	90	0	148	46	15	18	18	1.84
31985255--31985402	31	4.5	31	88	5	161	48	14	17	19	1.81
31985542--31985615	27	2.8	27	84	10	82	37	18	24	18	1.94
31985774--31985838	22	3.0	22	82	8	87	33	24	21	20	1.97
31986283--31986459	27	6.6	27	88	0	246	24	20	19	35	1.96
31986446--31986836	27	14.6	26	79	6	336	31	9	19	39	1.83
31991257--31991476	40	5.6	41	82	7	260	25	23	26	24	2.00
31994511--31994543	17	1.9	17	93	0	57	51	0	6	42	1.26
31995814--31995986	27	6.4	27	87	2	195	28	23	6	41	1.80
31996018--31996114	27	3.6	27	92	0	149	46	22	3	27	1.67
31995976--31996114	54	2.6	54	81	3	147	41	21	7	28	1.81
31996195--31996246	27	1.9	27	84	7	70	38	23	21	17	1.93
31997078--31997147	25	2.8	24	89	4	95	24	25	24	25	2.00
31997078--31997174	25	4.0	23	84	8	86	26	23	23	25	2.00
31997366--31997444	31	2.5	31	97	0	149	24	17	26	31	1.97
31999259--31999399	24	5.9	24	85	7	180	21	14	32	31	1.94
31999259--31999399	72	2.0	72	87	5	205	21	14	32	31	1.94
32009753--32009862	26	4.2	26	97	0	184	36	24	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32013333--32013417	30	2.8	31	82	7	104	14	23	0	62	1.31
32013497--32013542	15	3.1	14	84	12	56	4	17	2	76	1.06
32014482--32014536	27	2.0	27	89	0	83	9	7	5	78	1.10
32015484--32015508	13	1.9	13	100	0	50	36	16	32	16	1.90
32015911--32016011	30	3.4	30	71	4	87	31	14	26	26	1.95
32025949--32026077	46	2.8	46	96	0	231	29	28	21	20	1.98
32025954--32026096	46	3.1	45	88	4	146	28	28	21	20	1.98
32026501--32026560	30	2.0	30	86	0	84	30	25	6	38	1.81
32034453--32034511	28	2.1	28	93	0	100	40	16	20	22	1.91
32039658--32039705	14	3.4	14	85	0	60	18	31	6	43	1.75
32040075--32040128	19	2.8	19	75	18	58	77	5	3	12	1.07
32046577--32046624	14	3.4	14	82	0	60	20	29	6	43	1.76
32048534--32048634	38	2.7	38	76	6	105	24	19	23	31	1.98
32048628--32048753	42	3.0	43	89	2	200	11	26	32	29	1.92
32048627--32048760	43	3.1	43	86	2	207	12	25	31	30	1.93
32048692--32048833	73	2.0	72	91	1	230	12	21	32	33	1.91
32048649--32048876	116	2.0	115	94	0	402	11	22	32	32	1.90
32048764--32049068	43	7.1	43	92	0	493	10	22	33	32	1.89
32053672--32053700	14	2.0	15	93	6	51	55	20	0	24	1.44
32056374--32056404	16	1.9	16	93	0	53	35	22	0	41	1.54
32056370--32056410	20	2.0	20	85	0	55	36	21	0	41	1.54
32056597--32056851	55	4.8	54	75	11	217	21	23	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32058029--32058088	29	2.1	29	90	6	95	28	0	28	43	1.55
32060518--32060551	13	2.7	13	90	4	52	67	5	2	23	1.26
32061165--32061204	19	2.1	19	85	0	53	25	35	17	22	1.95
32063093--32063263	93	1.8	93	93	2	299	29	28	20	21	1.98
32063085--32063260	46	3.8	47	80	12	220	30	28	19	21	1.98
32069813--32069984	93	1.8	93	92	2	292	28	28	20	22	1.99
32069806--32069981	46	3.8	46	76	14	191	29	28	20	21	1.98
32071929--32071973	14	3.2	14	87	0	54	17	33	6	42	1.76
32072794--32072850	30	2.0	28	82	6	69	54	3	28	14	1.56
32075189--32075228	14	2.9	14	88	0	53	50	7	32	10	1.64
32082454--32082493	14	2.8	14	96	3	71	67	5	7	20	1.34
32086739--32086782	13	3.3	13	80	3	52	34	0	15	50	1.45
32087746--32087805	29	2.1	29	93	0	102	41	30	0	28	1.56
32087752--32087799	15	3.3	15	73	5	53	43	27	0	29	1.55
32089318--32089352	16	2.1	17	89	5	54	28	0	11	60	1.32
32090597--32090634	19	2.0	20	85	15	53	39	23	0	36	1.55
32090863--32091033	93	1.8	93	93	0	297	28	28	21	21	1.98
32090858--32091030	46	3.7	46	79	10	208	29	27	20	21	1.98
32097811--32097848	19	2.0	20	85	15	53	39	23	0	36	1.55
32098077--32098245	46	3.7	46	76	4	187	30	28	18	21	1.97
32098078--32098248	93	1.8	93	92	0	288	30	28	19	21	1.97
32098668--32098727	30	2.0	30	83	0	75	35	25	3	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32103485--32103514	12	2.5	12	94	0	51	13	3	6	76	1.11
32103885--32103924	14	2.9	14	88	0	53	50	7	32	10	1.64
32110190--32110242	23	2.4	22	76	20	56	9	18	1	69	1.25
32113658--32113736	28	2.8	28	80	0	104	30	25	10	34	1.89
32114613--32114637	8	3.1	8	100	0	50	12	24	0	64	1.27
32115668--32115815	43	3.4	43	75	1	136	29	14	22	33	1.94
32120873--32120919	20	2.3	20	81	0	58	23	12	34	29	1.92
32125357--32125403	20	2.3	20	81	0	58	23	12	34	29	1.92
32128089--32128267	50	3.6	48	82	7	198	31	12	16	38	1.87
32128014--32128267	100	2.5	100	80	4	280	29	12	18	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311