genome.fa.s12.2.7.7.80.10.50.1000.286.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  286  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93345867--93345895	14	2.1	14	93	6	51	34	0	10	55	1.34
93353637--93353808	46	3.7	46	89	4	229	19	23	13	43	1.87
93354268--93354361	48	2.0	48	87	8	138	19	12	27	40	1.88
93356772--93356865	48	2.0	48	87	8	138	19	12	27	40	1.88
93357278--93357459	46	4.0	46	87	1	231	20	23	14	40	1.90
93361509--93361561	24	2.1	26	82	6	65	9	11	1	77	1.07
93361590--93361636	11	3.9	12	78	15	53	72	2	0	25	0.96
93361593--93361637	13	3.6	13	82	8	58	73	2	0	24	0.95
93362480--93362514	16	2.3	15	90	5	52	31	2	2	62	1.24
93364080--93364115	12	3.0	12	87	0	54	25	27	5	41	1.77
93364088--93364119	16	1.9	17	93	6	57	25	28	6	40	1.79
93371489--93371603	44	2.6	44	83	2	140	35	13	21	28	1.92
93371496--93371622	44	2.8	45	80	4	139	33	14	23	29	1.94
93374564--93374739	69	2.5	70	84	9	209	28	13	23	34	1.93
93374710--93374969	139	1.9	140	82	11	338	26	16	20	36	1.93
93374895--93375044	75	2.0	74	81	12	173	28	16	22	32	1.96
93374881--93375251	161	2.3	160	80	9	402	28	17	19	34	1.95
93375504--93375764	91	2.9	90	81	6	262	27	14	17	39	1.89
93375554--93375796	91	2.7	89	84	6	240	27	15	19	37	1.92
93376896--93376935	15	2.7	15	84	3	55	70	2	0	27	1.01
93377353--93377387	5	7.2	5	87	6	54	37	0	2	60	1.12
93377573--93377628	20	2.8	20	81	7	53	30	3	8	57	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93379806--93379844	21	1.9	20	85	15	53	61	2	2	33	1.23
93385604--93385650	25	2.0	25	83	8	62	27	14	4	53	1.60
93385911--93386032	46	2.7	46	88	2	174	18	22	15	43	1.87
93393457--93393483	3	9.0	3	100	0	54	66	0	33	0	0.92
93399367--93399434	34	2.0	34	100	0	136	35	20	2	41	1.68
93418703--93419128	213	2.0	211	84	5	556	39	9	11	39	1.74
93435153--93435257	47	2.2	47	94	0	183	25	15	26	32	1.95
93435638--93435681	24	1.9	22	81	9	52	45	6	22	25	1.77
93437607--93437635	13	2.3	13	94	5	51	48	0	0	51	1.00
93438294--93438355	4	16.0	4	77	12	51	72	0	27	0	0.85
93438301--93438353	18	2.8	19	81	13	74	75	0	24	0	0.80
93440877--93441000	39	3.2	39	95	0	221	12	25	24	37	1.90
93440877--93441016	39	3.6	38	88	3	199	12	26	23	37	1.90
93441281--93441311	15	2.1	15	100	0	62	54	6	19	19	1.65
93444563--93444737	90	1.9	89	82	6	219	28	27	18	26	1.98
93444758--93444915	48	3.3	48	80	8	178	27	27	18	25	1.98
93444782--93444921	48	2.9	48	89	0	217	25	30	19	25	1.98
93450809--93450965	38	4.0	38	82	8	147	21	21	25	31	1.98
93455130--93455200	33	2.2	33	81	0	79	23	14	40	21	1.89
93457839--93457904	29	2.2	30	86	2	89	46	12	3	37	1.56
93463652--93463684	18	1.9	18	88	11	52	33	3	9	54	1.47
93469249--93469455	47	4.2	48	79	5	168	25	16	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93487839--93488127	76	3.8	76	91	3	422	26	17	24	31	1.97
93488072--93488399	88	3.7	89	80	8	341	30	15	19	34	1.93
93488303--93488338	14	2.7	13	83	8	54	30	13	8	47	1.73
93488337--93488551	76	2.9	74	80	6	247	29	18	20	31	1.96
93488539--93488566	14	2.0	14	100	0	56	14	14	7	64	1.48
93488485--93488698	89	2.4	88	91	0	329	30	17	19	32	1.95
93489769--93489794	11	2.4	11	100	0	52	69	7	0	23	1.14
93490811--93490858	24	1.9	26	84	16	66	35	0	6	58	1.23
93499024--93499059	17	2.1	17	90	10	56	33	0	0	66	0.92
93501268--93501312	21	2.1	21	100	0	90	35	22	4	37	1.74
93506567--93506650	44	1.9	44	82	0	105	36	21	14	27	1.92
93506708--93506824	43	2.7	42	72	6	99	35	18	16	29	1.93
93508032--93508062	3	10.3	3	100	0	62	35	0	0	64	0.94
93512179--93512243	32	2.0	34	87	6	98	18	0	40	41	1.51
93512215--93512263	23	2.2	23	85	3	64	12	0	34	53	1.39
93512232--93512277	19	2.6	18	86	10	60	15	0	30	54	1.41
93512275--93512342	26	2.6	26	100	0	136	44	0	14	41	1.45
93512326--93512366	16	2.5	17	77	22	52	58	0	0	41	0.98
93512461--93512850	125	3.1	123	80	6	385	36	16	17	29	1.92
93515940--93516028	29	3.1	29	67	23	89	51	5	4	38	1.46
93515947--93516044	27	3.6	27	70	22	87	57	5	4	33	1.40
93515930--93516062	56	2.4	56	97	0	248	52	6	3	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93515969--93516055	27	3.2	26	69	23	70	54	5	2	37	1.37
93517138--93517170	7	4.7	7	92	0	57	57	12	0	30	1.35
93517135--93517178	21	2.1	21	79	4	54	56	15	2	25	1.51
93518122--93518201	24	3.1	27	67	15	71	60	1	7	31	1.33
93518117--93518217	49	2.0	50	88	1	150	58	1	6	32	1.36
93520731--93520859	45	2.9	45	83	0	168	17	20	20	40	1.92
93520974--93521124	18	8.4	18	76	10	105	34	13	13	39	1.83
93520959--93521072	36	3.2	35	79	6	131	35	13	12	39	1.82
93520959--93521213	18	13.8	18	72	8	100	35	12	13	38	1.82
93523627--93523660	15	2.1	15	89	10	50	70	8	5	14	1.31
93523675--93524027	3	117.3	3	71	12	199	60	1	7	30	1.35
93523933--93524032	35	2.9	35	76	23	97	63	2	6	29	1.29
93527345--93527495	42	3.6	42	84	5	180	30	24	13	31	1.94
93532810--93532867	18	3.2	19	78	11	59	67	3	15	13	1.36
93534204--93534297	48	2.0	48	85	8	129	20	12	26	40	1.88
93536276--93536326	22	2.3	22	80	10	59	33	0	1	64	1.05
93537422--93537474	17	3.2	16	78	7	52	60	3	0	35	1.15
93538740--93538780	15	2.5	17	80	11	59	65	0	0	34	0.93
93538772--93538831	24	2.6	23	77	12	61	51	1	0	46	1.10
93538740--93538803	22	2.8	22	78	4	65	57	0	0	42	0.98
93538743--93538822	24	3.4	23	70	20	60	56	1	0	42	1.07
93539841--93539892	21	2.5	21	76	14	63	46	3	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93543511--93543590	40	2.0	40	97	0	151	35	18	15	31	1.92
93543578--93543616	21	1.9	20	89	5	60	43	10	5	41	1.61
93544215--93544260	23	2.0	23	84	12	60	45	10	6	36	1.65
93544222--93544266	23	2.0	23	82	8	56	40	13	8	37	1.76
93545830--93545863	17	2.0	17	88	0	50	41	20	0	38	1.53
93548692--93548745	16	3.5	16	80	10	76	35	20	12	31	1.90
93548694--93548754	30	2.0	30	100	0	122	36	22	9	31	1.87
93549268--93549356	16	5.4	16	69	19	67	59	13	7	19	1.58
93568727--93569000	45	6.2	45	82	11	293	43	14	22	19	1.87
93600287--93600338	12	4.5	11	75	13	50	38	1	3	55	1.29
93604054--93604283	46	5.0	46	92	0	334	23	23	14	38	1.91
93606360--93606398	16	2.4	16	91	0	60	0	30	0	69	0.89
93608310--93608407	49	2.0	50	82	6	119	48	8	12	30	1.69
93608427--93608507	18	4.6	18	69	14	60	24	7	4	62	1.41
93608403--93608509	53	2.0	53	98	0	205	26	7	6	59	1.49
93610057--93610208	18	8.4	18	77	1	135	34	13	14	37	1.86
93610057--93610188	54	2.4	54	84	2	158	34	14	13	37	1.86
93610103--93610208	54	2.0	54	92	0	176	34	14	13	37	1.85
93611662--93611695	4	8.0	4	87	12	50	23	2	0	73	0.97
93611662--93611695	9	4.0	8	88	11	50	23	2	0	73	0.97
93611661--93611695	13	2.7	13	90	0	61	22	5	0	71	1.07
93612072--93612297	79	2.9	78	87	3	319	31	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93612274--93612411	40	3.5	40	84	0	186	37	21	10	30	1.87
93612597--93612627	15	2.1	15	100	0	62	48	12	0	38	1.42
93614072--93614105	11	3.2	11	91	4	52	70	0	2	26	1.01
93616113--93616160	19	2.6	18	83	9	62	66	2	6	25	1.26
93616115--93616157	17	2.4	17	82	17	52	67	2	6	23	1.27
93616245--93616326	33	2.3	38	83	12	102	52	0	13	34	1.41
93616311--93616352	19	2.3	18	87	4	57	69	2	2	26	1.13
93616717--93616855	35	4.0	35	88	0	197	15	0	48	36	1.45
93616745--93616861	22	5.1	22	69	11	92	12	0	50	36	1.41
93616736--93616855	13	10.2	13	69	23	86	12	0	49	38	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311