genome.fa.s12.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  94  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31179350--31179511	43	3.8	43	78	4	148	25	17	24	32	1.97
31183643--31183677	18	1.9	18	94	0	61	51	34	2	11	1.53
31190794--31190950	43	3.7	43	78	7	167	30	22	18	28	1.97
31193749--31193838	27	3.3	27	76	4	101	31	21	26	21	1.98
31193843--31193998	69	2.3	69	78	5	181	38	16	24	21	1.92
31197316--31197717	201	2.0	201	93	0	689	39	6	22	31	1.80
31197902--31197981	41	2.0	41	87	0	115	28	10	23	37	1.87
31201465--31201491	10	2.7	10	100	0	54	29	18	11	40	1.85
31203607--31203863	40	6.5	40	84	7	303	25	22	27	24	2.00
31203608--31203863	79	3.2	79	81	7	245	25	22	27	24	2.00
31211747--31211970	40	5.6	40	87	7	305	24	22	27	25	2.00
31211746--31212003	119	2.2	119	84	6	319	25	22	27	25	2.00
31222866--31223014	43	3.5	42	79	9	160	30	26	18	24	1.98
31235558--31235629	6	11.7	6	75	16	58	75	2	16	5	1.12
31235557--31235635	36	2.2	36	84	8	99	74	2	16	6	1.13
31235566--31235635	30	2.3	29	83	9	79	77	1	15	5	1.03
31238700--31238736	19	2.0	19	94	5	67	21	5	13	59	1.54
31253389--31253432	22	2.0	22	100	0	88	36	13	9	40	1.76
31256321--31256435	52	2.2	53	87	4	171	24	25	13	36	1.92
31256321--31256436	24	4.4	27	75	17	120	25	25	13	36	1.92
31262121--31262166	18	2.5	19	86	13	62	8	28	0	63	1.24
31262177--31262226	20	2.4	21	83	9	59	4	18	4	74	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31262192--31262264	21	3.8	20	72	12	55	5	23	1	69	1.17
31263378--31263409	11	2.9	11	95	0	55	25	9	3	62	1.40
31269164--31269271	47	2.3	47	82	7	121	37	18	21	22	1.94
31269251--31269448	54	3.7	54	83	4	256	35	18	24	21	1.95
31293026--31293056	14	2.2	14	100	0	62	41	6	12	38	1.69
31299008--31299041	14	2.3	15	95	5	61	26	0	0	73	0.83
31299007--31299044	14	2.5	15	87	12	60	26	0	0	73	0.83
31299418--31299449	9	3.6	9	100	0	64	12	0	9	78	0.97
31299500--31299551	23	2.3	23	90	6	79	34	13	9	42	1.77
31303953--31304004	23	2.3	23	90	6	79	34	13	9	42	1.77
31308682--31308727	18	2.6	18	78	0	56	50	8	30	10	1.68
31311469--31311499	16	1.9	16	93	0	53	41	0	3	54	1.16
31311579--31311609	12	2.6	12	94	0	53	74	0	25	0	0.82
31326166--31326317	73	2.1	73	97	0	286	25	18	21	34	1.96
31327414--31327559	24	6.0	24	93	2	213	36	5	36	20	1.76
31327497--31327562	12	5.5	12	70	0	51	37	9	34	18	1.82
31328395--31328434	16	2.3	18	84	16	50	32	0	30	37	1.58
31329131--31329211	33	2.4	34	77	8	94	28	18	23	29	1.98
31329131--31329223	32	2.8	31	73	9	78	25	20	25	27	1.99
31335333--31335454	24	5.0	24	91	5	192	36	4	38	20	1.74
31337072--31337152	33	2.4	34	77	8	94	28	18	23	29	1.98
31337072--31337164	32	2.8	31	73	9	78	25	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31343573--31343628	26	2.2	26	100	0	112	28	10	10	50	1.71
31343565--31343628	26	2.4	27	89	10	105	29	12	9	48	1.72
31347870--31348014	43	3.4	43	75	9	136	26	25	21	26	1.99
31350435--31350658	79	2.8	77	82	8	252	24	28	22	24	2.00
31350435--31350658	39	5.7	40	85	6	262	24	28	22	24	2.00
31350416--31350658	40	6.1	40	83	9	229	24	27	22	25	2.00
31358660--31358900	39	6.1	40	82	9	273	24	27	22	24	2.00
31358679--31358900	77	2.8	79	84	10	276	25	27	22	24	2.00
31360720--31360904	40	4.7	38	78	11	158	25	21	27	25	1.99
31360720--31360902	80	2.3	81	81	6	205	25	21	27	25	1.99
31377299--31377476	40	4.5	40	90	3	263	24	24	28	23	2.00
31379460--31379743	43	6.6	43	92	0	442	30	31	25	12	1.93
31379741--31379859	38	3.1	38	87	2	148	26	26	24	23	2.00
31381749--31381897	41	3.6	41	75	12	135	23	20	28	27	1.99
31381728--31381888	41	3.9	40	72	18	132	22	21	27	27	1.99
31388714--31388824	41	2.6	43	76	9	111	32	23	17	27	1.96
31392540--31392710	93	1.8	93	94	0	306	28	29	21	21	1.98
31392532--31392707	46	3.8	46	79	12	216	29	28	20	21	1.98
31400096--31400267	93	1.8	93	96	0	317	27	29	21	20	1.98
31400089--31400264	46	3.8	46	79	12	216	28	29	21	20	1.98
31401978--31402041	27	2.3	27	81	7	67	31	12	9	46	1.73
31401990--31402049	27	2.2	27	79	8	68	31	10	8	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31406976--31407048	28	2.6	28	80	6	78	31	8	9	50	1.64
31416615--31416671	26	2.2	26	83	3	69	26	17	19	36	1.94
31417889--31417937	16	3.0	16	74	14	55	67	0	28	4	1.09
31418859--31418924	27	2.6	24	79	13	62	54	7	1	36	1.38
31421293--31421349	26	2.1	27	83	3	71	28	21	15	35	1.94
31422404--31422455	25	2.1	25	100	0	104	30	17	11	40	1.85
31426100--31426134	12	2.8	13	86	8	54	77	0	22	0	0.78
31427055--31427116	25	2.4	26	83	5	81	56	4	1	37	1.30
31430557--31430581	12	2.1	12	100	0	50	40	0	8	52	1.31
31430789--31430955	40	4.2	40	87	4	246	26	27	23	22	2.00
31430790--31430952	81	2.0	81	91	0	263	25	26	23	23	2.00
31441451--31441680	40	5.8	40	90	1	345	26	27	21	23	1.99
31445195--31445315	54	2.2	54	86	0	161	34	18	6	40	1.76
31445160--31445291	27	4.9	27	87	1	167	31	21	6	40	1.78
31445277--31445599	27	12.0	27	78	7	217	39	19	8	31	1.83
31445167--31445315	81	1.8	81	81	2	183	33	18	6	40	1.77
31445268--31445597	54	6.1	54	76	8	242	39	20	8	31	1.82
31445282--31445515	81	2.9	81	81	6	271	41	20	8	30	1.82
31445616--31445693	27	2.9	27	77	11	88	35	21	20	21	1.96
31446500--31446619	25	4.8	25	90	4	188	26	25	22	25	2.00
31446838--31447011	31	5.6	31	88	2	242	28	15	24	31	1.96
31446839--31447009	93	1.8	93	89	0	270	27	15	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31446839--31447009	62	2.8	62	92	0	288	27	15	25	31	1.96
31452404--31452568	30	5.5	30	76	8	129	26	27	11	35	1.91
31452375--31452565	60	3.2	60	75	6	206	24	27	11	36	1.90
31464881--31464919	20	1.9	21	89	5	62	48	10	0	41	1.37
31472506--31472682	50	3.7	48	79	10	175	27	20	28	23	1.99
31476971--31477012	22	1.9	22	85	9	59	33	0	35	30	1.58
31479464--31479587	62	2.0	62	100	0	248	30	16	24	29	1.96
31480712--31480791	43	1.9	42	87	7	119	20	22	32	25	1.98
31484707--31484758	25	2.1	25	88	0	77	40	13	7	38	1.73
31486908--31487002	40	2.4	40	84	8	122	24	15	31	28	1.96
31491228--31491377	20	7.5	20	90	0	228	12	22	27	38	1.89
31491228--31491395	40	4.2	40	87	0	228	11	22	26	38	1.89
31491228--31491395	60	2.8	60	88	0	246	11	22	26	38	1.89
31494889--31494933	19	2.4	19	96	0	81	26	17	17	37	1.93
31496442--31496466	12	2.1	12	100	0	50	52	0	32	16	1.44
31498227--31498269	20	2.2	20	86	0	59	48	18	2	30	1.60
31500806--31500862	30	1.9	30	92	0	96	21	29	28	21	1.98
31510848--31510927	27	3.0	27	85	5	108	32	21	26	20	1.97
31516532--31516585	22	2.5	21	81	3	63	14	27	35	22	1.93
31518915--31519023	43	2.6	42	79	5	121	31	26	16	25	1.97
31526498--31526658	43	3.7	43	80	7	166	29	24	19	26	1.98
31526519--31526659	44	3.3	42	82	9	151	31	24	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31526495--31526659	86	1.9	85	83	3	215	30	24	19	26	1.98
31526519--31526676	44	3.7	43	75	16	121	31	24	18	25	1.98
31527683--31527722	20	2.0	20	90	0	62	42	17	10	30	1.82
31531768--31531845	38	2.1	38	92	0	129	44	10	7	37	1.67
31534263--31534500	49	4.8	49	77	5	244	30	25	16	27	1.97
31534734--31534787	27	2.0	27	85	7	74	38	12	9	38	1.76
31536092--31536117	13	2.0	13	100	0	52	7	30	7	53	1.57
31543127--31543251	29	4.3	29	90	1	198	24	14	32	29	1.94
31546618--31546812	38	5.0	38	86	3	230	31	26	22	20	1.98
31548349--31548568	46	4.8	46	82	10	279	20	22	30	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311