genome.fa.s12.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  133  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44899167--44899198	15	2.1	15	94	0	55	59	6	9	25	1.52
44903065--44903190	44	3.0	42	75	12	114	27	18	24	29	1.98
44921585--44921684	41	2.5	40	88	1	137	25	16	25	34	1.95
44922457--44922518	27	2.5	24	80	19	81	30	1	14	53	1.51
44922468--44922524	27	2.1	27	100	0	114	28	3	10	57	1.48
44928647--44928846	27	7.4	27	86	1	267	35	19	20	25	1.96
44929497--44929547	27	1.9	26	84	4	66	19	27	17	35	1.94
44929514--44929694	73	2.5	73	92	0	290	23	23	18	34	1.96
44929639--44929700	33	1.9	32	83	3	79	20	20	20	37	1.95
44929662--44929719	27	2.2	26	84	3	71	22	22	18	36	1.95
44935543--44935714	27	6.4	27	81	3	186	36	19	19	25	1.94
44936456--44936514	27	2.2	26	84	3	73	22	22	18	37	1.94
44941703--44941732	14	2.1	14	93	0	51	53	16	0	30	1.44
44941960--44942118	43	3.7	42	72	19	132	32	25	18	23	1.97
44945675--44945706	16	2.0	16	93	0	55	53	31	6	9	1.58
44946922--44946948	8	3.4	8	100	0	54	33	29	25	11	1.91
44946919--44946960	16	2.6	16	84	0	57	47	21	21	9	1.79
44947150--44947260	28	3.9	28	86	2	143	26	14	31	27	1.95
44947147--44947258	56	2.0	56	87	5	163	26	14	31	27	1.95
44958742--44958805	33	2.0	32	84	3	83	20	21	20	37	1.94
44958767--44958826	27	2.3	26	85	2	75	21	23	20	35	1.96
44960957--44961010	27	2.0	27	85	3	74	35	20	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44961011--44961183	27	6.4	27	81	2	195	26	20	17	35	1.95
44961030--44961182	81	1.9	81	90	2	245	25	18	18	37	1.94
44961011--44961183	54	3.2	54	84	0	229	26	20	17	35	1.95
44965798--44965870	29	2.6	28	82	6	85	27	30	16	26	1.97
44976549--44976643	41	2.3	41	89	3	138	21	22	26	30	1.98
44982153--44982265	29	4.0	28	75	8	111	29	29	15	26	1.96
44982324--44982357	17	1.9	18	88	5	52	20	44	23	11	1.84
44982488--44982530	8	5.4	8	82	0	59	9	20	27	41	1.83
44982476--44982534	24	2.5	24	88	0	82	8	18	22	50	1.73
44982476--44982534	16	3.7	16	75	8	66	8	18	22	50	1.73
44986657--44986756	29	3.5	28	86	6	121	30	32	15	23	1.95
44987787--44987884	27	3.5	28	87	2	126	26	12	28	32	1.92
44987815--44987897	27	3.0	27	85	5	87	28	12	25	33	1.92
44987787--44987898	28	4.0	27	81	6	89	28	11	25	33	1.91
44992239--44992549	39	8.0	39	91	0	505	22	26	27	22	1.99
44998568--44998691	22	5.5	22	77	12	117	25	22	16	36	1.94
44998558--44998696	45	3.1	45	76	14	133	25	23	15	35	1.94
45002441--45002625	55	3.4	53	73	14	144	35	16	25	23	1.95
45007077--45007146	24	2.8	25	82	6	88	27	22	21	28	1.99
45007367--45007449	30	2.7	31	87	3	116	32	19	26	21	1.97
45011091--45011130	21	2.0	20	85	5	53	40	10	27	22	1.86
45029515--45029595	40	2.0	40	97	0	153	25	13	23	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45030768--45030888	28	4.2	28	78	7	118	27	33	11	28	1.91
45030788--45030888	28	3.6	28	82	1	121	28	34	9	26	1.89
45031105--45031137	16	2.1	16	94	0	57	9	18	24	48	1.76
45031255--45031335	40	2.0	40	97	0	153	25	13	23	37	1.92
45032508--45032628	28	4.2	28	79	7	127	27	33	11	27	1.91
45032528--45032628	28	3.6	28	83	1	130	28	35	9	25	1.88
45032845--45032877	16	2.1	16	94	0	57	9	18	24	48	1.76
45034572--45034656	29	3.0	29	92	1	136	25	32	17	23	1.97
45034874--45034928	16	3.4	16	82	9	76	10	20	18	50	1.76
45038868--45038950	40	2.1	40	95	0	148	26	18	21	33	1.96
45039907--45040002	24	4.0	23	87	6	111	30	21	18	29	1.97
45039921--45040002	24	3.4	24	94	1	137	29	21	18	30	1.97
45040052--45040118	20	3.3	20	91	0	107	31	20	11	35	1.89
45043241--45043358	28	4.1	28	83	5	139	27	32	9	30	1.88
45043575--45043606	16	2.0	16	93	0	55	9	21	18	50	1.75
45051282--45051433	47	3.2	47	97	0	277	28	30	7	33	1.84
45054564--45054734	40	4.3	40	91	2	247	26	20	26	26	1.99
45054511--45054735	80	2.8	79	81	7	258	25	21	27	25	1.99
45054512--45054735	40	5.6	39	83	7	229	25	21	27	25	1.99
45054592--45054754	40	4.1	40	86	5	129	25	20	28	25	1.99
45054550--45054768	80	2.8	80	80	8	218	27	20	26	25	1.99
45059022--45059217	40	4.9	40	93	0	320	22	29	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45061219--45061370	47	3.2	47	96	0	277	28	30	7	32	1.86
45073498--45073721	39	5.7	39	81	4	141	31	28	21	18	1.97
45073539--45073729	39	4.9	39	84	1	247	28	28	23	19	1.98
45073560--45073713	79	1.9	79	89	0	236	28	27	23	20	1.99
45073507--45073729	118	1.9	118	83	1	295	30	27	22	19	1.98
45074434--45074516	24	3.5	24	84	0	103	36	28	12	22	1.90
45074404--45074516	48	2.4	48	83	0	127	34	29	12	23	1.92
45074454--45074525	24	3.0	24	71	18	60	37	26	12	23	1.90
45075691--45075732	17	2.5	17	88	3	59	38	4	2	54	1.34
45077564--45077593	15	2.0	15	100	0	60	46	20	13	20	1.83
45082641--45082777	55	2.5	55	80	7	152	18	24	31	24	1.98
45086476--45086507	14	2.4	13	90	10	55	62	12	6	18	1.50
45092294--45092320	13	2.1	13	100	0	54	62	14	7	14	1.51
45094898--45095000	37	2.8	37	70	16	95	33	31	15	19	1.93
45103441--45103686	44	5.6	44	82	8	245	32	23	18	24	1.97
45103441--45103686	89	2.8	86	81	7	277	32	23	18	24	1.97
45110942--45111033	39	2.4	39	85	1	132	22	26	23	27	2.00
45111679--45111719	21	2.0	21	100	0	82	43	14	2	39	1.59
45111991--45112057	33	2.0	33	100	0	134	46	17	8	26	1.78
45115594--45115733	39	3.5	39	93	1	226	28	28	22	20	1.98
45119498--45119535	19	2.0	20	85	15	53	39	23	0	36	1.55
45125610--45125908	48	6.1	48	78	7	212	32	26	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45125673--45125893	94	2.3	94	80	9	232	30	26	15	27	1.96
45125747--45125908	53	3.1	51	79	14	172	32	25	13	28	1.94
45127875--45127920	6	7.2	6	81	13	56	65	6	0	28	1.17
45127875--45127928	27	2.0	27	100	0	108	62	11	0	25	1.28
45135723--45135895	46	3.7	46	78	10	199	22	19	27	30	1.98
45135720--45135890	93	1.8	93	92	0	288	22	19	28	29	1.98
45138829--45138915	45	1.9	45	86	4	122	9	17	14	58	1.62
45138827--45138906	30	2.6	31	81	11	94	11	17	13	57	1.65
45138836--45138915	15	5.4	15	81	10	85	10	17	12	60	1.59
45141303--45141475	46	3.7	46	77	11	183	22	20	26	30	1.98
45141300--45141470	93	1.8	93	89	2	272	22	20	27	29	1.98
45147441--45147465	8	3.1	8	100	0	50	76	24	0	0	0.80
45165096--45165137	17	2.3	18	84	16	59	23	38	21	16	1.93
45173359--45173464	27	3.9	26	84	7	131	17	24	22	34	1.96
45173359--45173468	54	2.0	54	87	3	159	17	24	21	36	1.94
45175475--45175540	31	2.1	31	91	0	105	50	22	12	15	1.77
45175793--45175847	21	2.6	21	79	0	65	5	43	21	29	1.75
45176257--45176285	13	2.1	14	93	6	51	55	10	0	34	1.34
45181267--45181339	9	8.1	9	73	11	60	32	2	21	42	1.67
45181284--45181359	36	2.1	36	92	0	125	34	1	18	46	1.58
45181387--45181413	13	2.1	13	100	0	54	37	0	11	51	1.37
45181341--45181456	56	2.1	56	90	3	180	32	0	18	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45181316--45181545	99	2.4	96	88	5	331	32	0	18	48	1.51
45181416--45181532	9	13.4	9	71	10	66	30	0	18	50	1.47
45181317--45181524	43	4.5	43	76	16	211	31	0	19	48	1.53
45184879--45184999	59	2.1	59	85	3	163	35	4	38	22	1.73
45185087--45185674	114	5.1	116	82	5	590	37	21	15	25	1.92
45186053--45186098	22	2.1	21	84	11	58	50	32	0	17	1.47
45186052--45186093	15	2.9	15	82	3	50	47	35	0	16	1.47
45186117--45186161	14	3.2	14	78	12	56	46	31	0	22	1.52
45186463--45186509	14	3.4	14	81	0	58	48	44	0	6	1.28
45186449--45186542	35	2.7	35	81	5	91	47	38	0	13	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311