genome.fa.s12.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  146  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49569045--49569198	27	5.7	26	80	6	164	29	9	20	39	1.85
49569045--49569210	54	3.1	54	85	3	210	30	9	21	38	1.86
49570532--49570598	24	2.8	24	75	8	73	28	34	2	34	1.73
49572370--49572459	27	3.4	26	76	8	92	38	18	21	21	1.93
49572701--49572788	27	3.3	27	84	10	103	28	10	18	43	1.82
49572716--49572871	54	2.9	54	80	5	174	30	8	20	40	1.83
49572742--49572872	27	4.9	27	85	4	140	29	9	21	39	1.84
49572714--49572883	27	6.3	26	79	7	117	30	9	21	39	1.85
49576057--49576145	27	3.3	26	74	3	79	41	15	19	23	1.89
49576383--49576441	27	2.2	26	78	3	64	30	13	15	40	1.86
49576397--49576555	27	5.9	27	77	5	99	30	11	20	37	1.88
49580849--49580875	14	1.9	14	100	0	54	74	0	25	0	0.83
49583639--49583664	6	4.3	6	100	0	52	15	0	0	84	0.62
49588143--49588315	93	1.9	93	88	0	265	30	27	19	22	1.98
49588136--49588308	46	3.7	46	74	15	167	30	27	19	22	1.98
49588187--49588330	46	3.1	44	69	21	98	31	27	18	22	1.97
49590702--49590785	15	5.7	15	73	9	57	54	16	16	11	1.70
49590713--49590790	15	5.2	15	72	9	61	53	15	16	14	1.73
49593732--49593898	91	1.9	88	86	6	237	28	29	19	21	1.98
49593725--49593883	46	3.5	45	78	8	162	30	30	18	21	1.97
49595570--49595666	40	2.5	40	94	3	171	45	2	18	34	1.61
49608267--49608489	39	5.7	40	85	5	235	26	21	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49608319--49608522	79	2.6	77	81	9	216	27	21	26	24	1.99
49616297--49616405	38	2.8	39	86	8	152	24	22	25	26	2.00
49627313--49627517	27	7.6	26	82	6	196	29	28	15	26	1.96
49627313--49627516	54	3.8	54	81	5	241	29	28	15	25	1.96
49633474--49633512	20	2.0	20	94	0	69	48	12	15	23	1.79
49636510--49636649	35	4.0	35	83	0	190	35	30	17	16	1.92
49642662--49642730	27	2.6	27	83	0	84	23	20	15	40	1.91
49646185--49646320	42	3.2	44	77	11	131	30	18	23	27	1.98
49661293--49661460	40	4.2	40	83	4	106	25	27	23	23	2.00
49661316--49661460	40	3.6	40	85	4	193	23	26	24	25	2.00
49666896--49666937	17	2.7	16	78	14	52	0	45	0	54	0.99
49674459--49674519	30	2.0	30	90	0	95	29	24	8	37	1.84
49679755--49679796	21	2.0	21	85	0	57	23	16	40	19	1.91
49691280--49691372	28	3.3	28	95	3	161	34	27	7	30	1.85
49696551--49696659	43	2.6	44	78	7	118	33	26	16	23	1.96
49703824--49703849	13	2.0	13	100	0	52	23	30	23	23	1.99
49714129--49714231	37	2.8	37	89	0	152	25	31	18	25	1.98
49714382--49714803	48	8.7	48	90	3	650	31	27	6	34	1.81
49714385--49714881	98	4.9	97	86	6	638	31	26	6	35	1.81
49714382--49714888	148	3.4	146	87	6	694	32	26	6	35	1.81
49714741--49714868	60	2.0	62	88	7	188	30	27	7	34	1.85
49718340--49719566	40	30.7	40	86	0	1612	28	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49720785--49720891	37	2.9	37	92	0	169	25	31	19	23	1.98
49721038--49721631	150	4.0	146	90	4	908	32	25	6	35	1.81
49721038--49721631	48	12.1	48	89	5	859	32	25	6	35	1.81
49725689--49725739	21	2.4	21	83	0	66	19	23	35	21	1.96
49728357--49728397	13	3.2	13	82	0	55	21	29	31	17	1.96
49744154--49744328	40	4.4	40	88	0	242	29	27	20	23	1.99
49746701--49746980	46	5.9	48	75	12	192	25	17	32	25	1.97
49746801--49746980	49	3.7	48	83	8	222	24	18	32	24	1.97
49746802--49746980	96	1.8	99	88	5	276	24	18	32	24	1.97
49752022--49752160	49	2.8	49	88	0	215	30	27	17	24	1.98
49762510--49762722	48	4.4	47	80	6	221	28	18	27	25	1.98
49762507--49762690	96	1.9	95	89	1	287	27	19	27	26	1.99
49774175--49774316	57	2.5	57	76	7	135	30	17	25	26	1.97
49776714--49776765	27	1.9	27	84	7	70	51	0	9	38	1.35
49783948--49784123	46	3.8	45	76	12	178	21	19	28	30	1.97
49783945--49784116	93	1.8	93	90	2	274	21	19	29	29	1.98
49795141--49795178	6	6.3	6	93	0	67	36	34	13	15	1.87
49798518--49798570	27	2.0	27	88	0	79	33	16	18	30	1.94
49798516--49798585	27	2.6	27	81	4	70	34	17	20	28	1.95
49803225--49803390	23	7.3	23	70	6	104	44	18	18	19	1.87
49803226--49803311	45	1.9	45	82	0	109	46	15	18	19	1.84
49805204--49805358	42	3.6	42	78	11	156	23	18	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49806093--49806137	22	2.0	24	82	8	58	33	4	24	37	1.76
49809435--49809459	8	3.1	8	100	0	50	52	0	24	24	1.48
49817439--49817592	42	3.6	43	71	13	129	25	18	22	33	1.97
49817439--49817601	43	3.8	43	71	13	138	25	18	23	32	1.97
49819418--49819587	43	4.0	43	79	7	184	25	15	27	31	1.96
49819419--49819587	85	2.0	85	82	2	205	25	15	26	31	1.96
49820243--49820282	18	2.2	18	100	0	80	22	0	20	57	1.41
49821609--49821652	20	2.2	20	84	8	54	59	22	18	0	1.38
49822667--49822695	13	2.2	13	100	0	58	31	0	13	55	1.39
49830845--49830873	13	2.2	13	100	0	58	31	0	13	55	1.39
49833586--49833646	25	2.4	25	83	8	79	42	22	11	22	1.86
49837071--49837102	15	2.1	15	100	0	64	50	18	6	25	1.70
49837787--49837969	49	3.7	50	78	5	185	30	25	17	26	1.97
49837782--49837962	100	1.8	100	86	2	265	30	25	17	26	1.97
49841269--49841320	27	2.0	26	85	11	70	30	11	19	38	1.87
49844451--49844626	49	3.5	49	78	9	176	32	27	15	24	1.96
49848387--49848562	46	3.8	45	77	11	187	22	20	28	28	1.98
49848384--49848555	93	1.8	93	91	2	283	22	20	28	27	1.99
49853419--49853643	40	5.6	40	81	1	227	24	26	22	25	2.00
49853383--49853643	80	3.3	79	81	4	276	25	26	22	26	2.00
49859659--49859700	20	2.1	20	95	0	75	54	11	7	26	1.62
49863480--49864225	46	16.1	47	92	3	1163	28	30	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49863555--49863626	22	3.2	22	63	18	58	27	31	11	29	1.91
49863480--49864225	93	8.0	94	91	3	1163	28	30	9	32	1.88
49863764--49863837	23	3.2	23	64	21	64	31	31	5	32	1.80
49863480--49864225	280	2.7	278	91	3	1209	28	30	9	32	1.88
49868073--49868152	29	2.7	29	83	9	92	27	32	15	25	1.95
49879394--49879646	68	3.9	64	77	10	219	30	16	28	24	1.97
49885808--49886002	49	3.9	49	87	2	291	28	25	18	27	1.98
49885915--49885995	26	3.2	26	63	16	71	30	25	16	27	1.96
49885813--49886000	100	1.9	100	95	0	340	28	25	19	26	1.99
49890368--49890392	6	4.2	6	100	0	50	48	16	16	20	1.82
49892768--49892924	27	5.8	27	79	3	154	36	19	17	26	1.94
49892771--49892934	81	2.0	81	82	2	195	37	18	18	25	1.94
49900338--49900476	27	5.1	27	89	1	174	36	15	20	27	1.93
49900366--49900511	54	2.7	54	81	2	150	36	18	19	26	1.94
49905267--49905304	20	1.9	20	94	0	67	28	18	2	50	1.61
49917434--49917506	34	2.2	33	83	11	87	27	21	21	28	1.99
49920520--49920623	45	2.3	45	85	6	129	34	9	28	26	1.88
49920514--49920623	47	2.4	46	83	6	134	35	9	28	27	1.87
49920699--49920783	40	2.2	40	84	2	109	17	22	31	28	1.97
49923320--49923673	40	8.9	40	95	0	584	21	21	29	27	1.99
49927496--49927604	45	2.3	46	87	7	150	33	10	29	27	1.89
49927675--49927752	39	2.0	40	84	2	104	16	24	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49929834--49929867	16	2.0	18	88	11	54	20	38	29	11	1.88
49934850--49934885	19	1.9	18	88	5	54	44	16	0	38	1.48
49940812--49941038	47	4.8	48	73	17	174	26	19	30	22	1.98
49943241--49943431	50	3.8	49	86	4	249	28	19	24	27	1.98
49943241--49943434	99	1.9	101	86	4	277	28	19	24	28	1.98
49945507--49945556	24	2.1	24	96	0	91	34	8	10	48	1.66
49951434--49951654	46	4.7	46	79	8	198	28	18	29	23	1.98
49959858--49959898	12	3.6	12	74	12	50	43	2	0	53	1.13
49966362--49966451	29	3.1	29	91	1	146	26	13	31	28	1.94
49970115--49970283	93	1.8	93	89	2	268	30	27	18	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311