genome.fa.s12.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  120  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39932716--39932980	93	2.8	92	87	1	377	22	18	28	30	1.97
39938548--39938675	46	2.8	46	91	0	202	19	21	30	28	1.97
39939021--39939071	25	2.0	25	96	0	93	27	13	27	31	1.94
39959387--39959484	34	2.9	33	75	11	92	29	22	23	24	1.99
39971893--39971977	42	2.0	42	100	0	170	34	16	28	21	1.95
39972264--39972293	12	2.5	12	94	0	51	26	0	16	56	1.40
39975789--39975872	43	2.0	43	84	13	111	25	17	28	28	1.98
39977192--39977239	25	1.9	25	83	8	62	41	2	6	50	1.39
39979849--39979885	18	2.1	18	100	0	74	21	21	10	45	1.82
39983043--39983226	41	4.5	41	79	1	181	33	27	20	19	1.96
39984868--39985062	27	7.2	27	88	4	277	33	17	21	26	1.96
39985577--39985640	22	2.9	22	77	13	69	20	23	21	34	1.97
39985642--39985682	20	2.0	20	85	0	55	14	17	29	39	1.89
39985726--39985807	27	3.1	26	81	11	94	17	21	21	39	1.93
39985924--39985998	6	12.3	6	75	13	73	20	18	12	49	1.79
39989026--39989070	21	2.1	22	84	12	58	40	51	4	4	1.42
39989575--39989694	41	2.9	40	85	2	159	29	30	18	21	1.97
39989945--39989996	27	1.9	27	84	0	68	36	15	15	32	1.89
39989954--39990328	27	13.9	27	79	8	223	30	10	19	39	1.85
39989952--39990328	54	7.0	54	76	11	272	30	10	19	39	1.85
39989961--39990328	81	4.6	79	75	10	291	30	9	20	40	1.84
39990312--39990392	26	3.1	26	82	3	99	28	18	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39990313--39990392	27	3.0	26	81	5	90	27	18	18	35	1.95
39990990--39991021	17	2.0	17	88	11	50	59	6	3	31	1.38
39991150--39991188	17	2.3	17	86	8	53	69	5	2	23	1.21
39991907--39991980	33	2.2	34	74	18	82	43	4	0	52	1.20
39991913--39992020	31	3.4	33	81	8	118	50	4	0	45	1.22
39991979--39992047	26	2.5	28	80	15	74	62	5	1	30	1.27
39992011--39992038	11	2.5	11	100	0	56	64	7	0	28	1.20
39993105--39993142	19	2.0	20	85	15	53	39	23	0	36	1.55
39993370--39993491	46	2.7	46	92	0	190	30	27	20	21	1.98
39993368--39993510	46	3.1	45	83	6	128	30	27	20	21	1.98
39993913--39993972	30	2.0	30	83	0	75	35	25	3	36	1.72
39994785--39994822	13	2.8	13	88	11	51	68	0	2	28	1.03
39994782--39994828	15	3.2	16	77	19	50	68	0	2	29	1.02
39994800--39994894	20	4.7	19	71	15	59	61	2	5	31	1.30
39994789--39994832	15	3.1	15	87	12	58	63	0	4	31	1.14
39995365--39995421	27	2.1	28	90	3	89	43	5	7	43	1.54
39997511--39997651	67	2.1	66	85	6	183	31	22	27	18	1.97
39997582--39997633	27	2.0	26	84	3	68	34	21	26	17	1.95
40003181--40003261	27	3.0	26	80	7	72	35	20	23	19	1.96
40003208--40003347	67	2.1	68	86	2	192	32	22	25	19	1.97
40005486--40005546	30	2.1	29	93	3	104	36	24	14	24	1.93
40012701--40012761	30	2.1	29	90	3	95	37	22	14	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40015603--40015698	29	3.3	29	92	1	158	30	31	13	25	1.94
40025578--40025861	48	5.9	47	79	5	214	28	18	29	24	1.98
40025595--40025861	96	2.8	96	81	7	294	28	18	29	23	1.98
40029098--40029213	43	2.7	43	78	6	137	20	18	26	34	1.96
40045554--40045599	21	2.3	20	78	14	51	45	17	6	30	1.73
40046425--40046476	10	5.1	10	80	11	52	59	3	0	36	1.16
40046434--40046476	22	2.0	22	90	0	68	58	2	0	39	1.11
40052418--40052582	46	3.6	46	89	0	240	29	27	20	22	1.98
40057606--40057824	46	4.7	46	77	8	221	29	27	19	23	1.98
40063228--40063276	24	2.0	24	100	0	98	30	20	20	28	1.98
40065311--40065353	22	2.0	22	81	9	52	23	27	13	34	1.93
40067046--40067270	40	5.7	40	85	5	287	25	21	27	25	1.99
40067046--40067277	119	1.9	119	82	6	290	25	21	27	25	1.99
40080002--40080184	42	4.4	42	83	6	219	29	15	26	28	1.96
40088102--40088273	93	1.8	93	92	0	290	28	30	20	20	1.98
40088094--40088269	46	3.8	46	79	10	196	29	29	19	21	1.98
40091336--40091582	34	7.2	34	85	1	316	36	21	14	28	1.92
40102466--40102506	15	2.7	15	78	14	57	60	9	17	12	1.57
40109423--40109544	42	2.9	40	73	9	100	31	16	22	29	1.96
40118502--40118552	23	2.2	23	100	0	102	29	25	7	37	1.84
40118742--40118812	32	2.2	32	92	2	115	42	14	21	22	1.88
40124194--40124253	30	2.0	30	100	0	120	40	0	6	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40125336--40125494	27	5.9	27	83	11	193	34	22	24	18	1.96
40125354--40125494	54	2.6	54	94	2	248	34	24	24	17	1.95
40125886--40125915	8	3.8	8	90	0	51	3	26	26	43	1.70
40127094--40127202	26	4.2	26	93	0	191	35	23	7	33	1.83
40128472--40128647	46	3.8	46	81	8	180	30	19	27	22	1.98
40128476--40128734	140	1.9	140	81	6	319	30	18	27	24	1.98
40129739--40129787	21	2.3	21	85	0	71	20	34	22	22	1.97
40132305--40132353	22	2.1	22	85	7	62	67	6	14	12	1.40
40133418--40133459	11	3.7	11	84	12	50	28	4	0	66	1.12
40136170--40136213	19	2.3	19	84	7	54	22	18	13	45	1.84
40138698--40138733	9	3.9	9	92	3	54	88	5	0	5	0.61
40138696--40138733	19	2.0	20	89	5	60	86	7	0	5	0.69
40139585--40139687	53	1.9	53	96	0	188	25	21	4	48	1.70
40139602--40139687	27	3.2	27	65	15	79	25	18	4	51	1.66
40140120--40140218	46	2.2	46	85	3	128	29	19	27	24	1.98
40140133--40140240	46	2.3	46	87	3	155	30	12	31	25	1.93
40140591--40141165	89	6.5	89	71	9	395	32	18	21	27	1.97
40140591--40141165	178	3.2	177	84	3	733	32	18	21	27	1.97
40142945--40142986	11	3.7	11	84	12	50	28	4	0	66	1.12
40143052--40143105	16	3.4	16	73	16	51	27	7	3	61	1.40
40147896--40148033	68	2.0	68	98	0	267	22	18	19	39	1.92
40153058--40153203	40	3.7	40	91	0	231	23	23	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40154584--40154625	20	2.0	22	86	9	61	45	0	0	54	0.99
40154681--40154751	15	4.5	15	75	16	63	50	1	0	47	1.09
40155745--40155807	26	2.6	24	83	11	83	63	3	6	26	1.34
40155759--40155810	26	2.0	26	100	0	104	61	3	3	30	1.32
40156642--40156685	13	3.4	13	78	9	54	65	11	9	13	1.46
40156642--40156693	27	2.0	26	88	3	77	61	9	7	21	1.51
40162720--40162756	17	2.1	18	90	5	58	62	0	0	37	0.96
40169161--40169202	21	1.9	23	85	9	61	35	2	30	30	1.71
40181420--40181444	11	2.3	11	100	0	50	84	0	0	16	0.63
40193914--40193961	23	2.1	23	100	0	96	50	8	12	29	1.69
40196824--40196953	48	2.7	48	89	4	199	20	18	25	35	1.95
40202632--40202754	43	2.9	42	78	7	122	24	17	25	32	1.97
40217079--40217177	26	3.8	26	89	1	146	20	13	33	33	1.91
40217269--40217327	27	2.2	27	84	0	73	50	10	22	16	1.75
40218623--40218779	70	2.3	69	87	5	228	38	16	5	39	1.71
40220046--40220099	20	2.7	20	85	0	72	29	25	5	38	1.79
40220046--40220127	42	2.0	42	83	4	105	28	21	10	39	1.87
40239776--40239811	17	2.2	16	90	9	56	13	11	13	61	1.58
40245351--40245428	26	3.0	26	88	1	104	24	14	20	41	1.89
40267577--40267780	42	4.8	42	79	1	192	28	17	25	28	1.98
40270870--40270989	42	2.9	42	87	5	188	29	21	13	35	1.91
40272766--40272795	13	2.3	13	100	0	60	13	6	6	73	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40284018--40284085	34	2.0	34	100	0	136	47	2	20	29	1.65
40287084--40287137	24	2.2	24	90	0	81	18	25	0	55	1.43
40289052--40289092	19	2.2	20	86	8	59	53	2	2	41	1.27
40289052--40289149	19	5.1	18	68	20	56	54	2	3	40	1.28
40292564--40292806	45	5.4	45	84	2	209	20	26	14	38	1.91
40294384--40294413	8	3.9	8	91	8	53	90	0	10	0	0.47
40294385--40294413	15	1.9	15	100	0	58	89	0	10	0	0.48
40294652--40294709	28	2.1	28	100	0	116	48	6	17	27	1.72
40296759--40296850	42	2.2	42	96	1	168	23	32	28	15	1.95
40306739--40306825	36	2.4	36	86	0	120	43	27	10	18	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311