genome.fa.s12.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  114  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37883871--37884072	56	3.8	54	78	9	200	31	27	15	26	1.96
37886642--37886938	97	3.0	99	89	3	472	32	24	15	27	1.95
37889696--37889833	53	2.6	54	82	1	170	37	17	23	21	1.94
37892818--37893114	99	3.0	99	92	0	504	33	24	15	26	1.95
37900280--37900576	99	3.0	99	92	0	513	34	24	15	25	1.94
37905461--37905625	43	3.9	42	74	11	129	31	25	18	24	1.98
37914638--37914797	43	3.7	43	79	11	157	30	26	18	25	1.98
37918478--37918540	31	2.0	31	100	0	126	22	9	22	46	1.80
37920209--37920278	23	3.0	23	95	0	122	12	31	25	30	1.93
37920380--37920432	26	2.0	27	88	3	81	33	20	13	32	1.91
37922959--37922996	14	2.9	13	81	11	51	18	13	10	57	1.63
37936377--37936559	46	4.0	46	92	0	294	25	32	8	33	1.86
37936576--37936696	22	5.2	22	66	21	68	26	28	10	33	1.90
37936533--37936873	47	7.1	47	86	6	423	26	29	10	33	1.90
37936598--37936676	25	3.3	25	67	16	76	30	26	8	34	1.87
37936662--37936827	56	3.1	55	71	24	174	24	28	12	33	1.92
37936627--37936839	103	2.1	102	92	2	365	23	29	13	33	1.93
37936584--37936873	150	1.9	150	91	0	472	25	28	11	33	1.91
37940678--37940834	28	5.5	28	75	6	136	29	29	19	21	1.97
37940705--37940806	29	3.6	29	80	7	118	29	31	16	22	1.96
37940678--37940838	57	2.8	57	90	0	232	29	29	18	21	1.97
37940866--37941040	40	4.4	40	91	2	271	28	24	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37942520--37942656	46	3.0	46	85	0	193	25	30	8	35	1.85
37942630--37943064	47	9.1	47	89	5	584	25	29	11	33	1.91
37942822--37943027	103	2.0	103	95	0	367	23	29	14	33	1.94
37942775--37943064	150	1.9	150	92	0	481	25	29	12	33	1.92
37942943--37943020	23	3.3	23	64	22	63	24	26	11	37	1.90
37943002--37943065	25	2.7	23	72	15	60	32	28	3	35	1.73
37945686--37945750	15	4.4	15	78	16	73	9	13	13	63	1.53
37958750--37958794	10	4.3	10	86	8	63	77	0	0	22	0.76
37964570--37964598	8	3.8	8	95	4	51	86	0	0	13	0.58
37972466--37972529	28	2.3	28	86	0	83	18	17	37	26	1.93
37972846--37973155	27	11.7	27	77	10	273	39	19	9	31	1.84
37972846--37973154	79	3.9	81	79	8	305	39	19	9	31	1.84
37972846--37973155	53	5.8	54	78	10	273	39	19	9	31	1.84
37973134--37973196	27	2.3	27	86	5	83	36	17	17	28	1.93
37977377--37977600	40	5.6	40	80	7	233	25	21	26	25	2.00
37986946--37987124	27	6.6	27	82	5	198	26	15	27	30	1.96
37986947--37987103	83	1.9	81	87	5	226	26	15	28	29	1.96
37986943--37987124	83	2.2	81	81	4	222	26	15	27	30	1.96
37988893--37989116	40	5.6	40	81	7	251	25	22	27	25	2.00
37988892--37989122	119	1.9	119	81	6	279	25	22	27	24	2.00
37988892--37989149	119	2.2	119	80	6	265	25	21	27	25	1.99
37993828--37994051	79	2.8	77	82	8	252	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37993828--37994051	40	5.7	40	85	6	262	25	27	22	25	2.00
38000450--38001373	460	2.0	460	98	0	1767	28	9	22	40	1.85
38002476--38002800	48	6.9	48	75	10	269	26	19	30	23	1.98
38002551--38002800	96	2.6	96	86	2	315	24	19	31	24	1.98
38010742--38010890	42	3.5	43	80	11	162	28	20	24	25	1.99
38023620--38023679	30	2.0	30	83	0	75	40	11	18	30	1.86
38023996--38024229	48	4.9	47	79	6	238	24	19	31	24	1.98
38024005--38024229	95	2.4	96	82	8	264	24	20	31	23	1.98
38026058--38026230	43	4.0	43	75	3	152	30	26	14	28	1.95
38041427--38041829	47	8.6	47	91	2	621	29	29	8	33	1.86
38041478--38041555	25	3.2	25	64	10	72	33	30	3	32	1.76
38045900--38046108	38	5.0	38	72	17	157	30	24	15	29	1.96
38045945--38046071	48	2.7	48	85	1	175	31	22	15	29	1.95
38048355--38048396	15	2.8	15	88	0	66	52	14	16	16	1.75
38052065--38052268	40	5.1	40	83	2	250	23	25	27	24	2.00
38052061--38052266	80	2.6	80	90	3	308	24	24	26	24	2.00
38054917--38054991	38	2.0	38	91	0	123	29	25	16	29	1.96
38054917--38055122	85	2.4	85	88	1	313	32	21	15	30	1.94
38056050--38056229	48	3.8	48	83	2	236	24	29	20	26	1.99
38056045--38056227	96	1.9	97	88	3	280	23	28	20	26	1.99
38060173--38060409	50	4.7	50	80	3	226	33	26	14	25	1.95
38060173--38060369	100	2.0	99	84	1	259	31	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38066620--38066855	48	4.9	48	89	0	328	26	29	16	27	1.97
38074711--38074748	19	2.0	19	100	0	76	36	21	5	36	1.76
38089332--38089395	30	2.1	30	100	0	128	35	3	6	54	1.41
38096815--38096858	15	2.9	15	89	0	70	56	13	13	15	1.67
38099609--38099778	56	3.0	56	78	8	175	19	15	32	32	1.93
38102890--38102997	57	1.9	57	96	0	198	20	18	12	48	1.81
38108519--38108572	21	2.6	21	81	0	63	33	7	35	24	1.83
38114484--38114510	14	1.9	14	100	0	54	44	0	11	44	1.39
38114574--38114608	17	2.1	18	89	10	56	42	8	17	31	1.79
38117212--38117251	20	2.0	20	85	0	53	50	0	12	37	1.41
38118855--38118887	7	4.7	7	100	0	66	45	15	0	39	1.46
38118855--38118895	21	2.0	21	85	0	55	41	14	7	36	1.74
38119056--38119082	12	2.2	12	100	0	54	7	14	33	44	1.73
38119089--38119165	39	2.0	39	89	0	118	33	22	22	22	1.97
38119251--38119390	40	3.6	38	73	11	122	27	19	20	32	1.97
38119767--38119878	50	2.2	50	81	6	127	22	0	33	43	1.53
38119813--38119924	7	15.6	7	72	9	64	20	0	36	41	1.59
38119812--38119875	22	2.9	22	86	11	87	18	0	40	40	1.51
38126902--38127097	43	4.6	43	88	0	275	24	16	30	28	1.97
38130437--38130604	86	2.0	86	90	0	264	38	14	10	36	1.81
38132351--38132417	31	2.2	31	84	10	84	41	1	2	53	1.25
38136126--38136176	19	2.6	21	75	15	54	41	0	3	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38147425--38147516	44	2.1	44	84	8	116	35	21	17	25	1.95
38148960--38149018	25	2.5	24	81	13	68	38	10	5	45	1.60
38152220--38152263	22	1.9	24	90	9	74	25	20	0	54	1.45
38152841--38152884	12	3.6	12	84	3	52	50	0	0	50	1.00
38152973--38153010	14	2.4	17	87	12	55	52	0	0	47	1.00
38154481--38154574	24	3.9	24	84	4	118	35	5	37	22	1.77
38155969--38156079	27	4.1	27	84	7	136	15	23	23	37	1.93
38155969--38156079	54	2.1	54	87	3	161	15	23	23	37	1.93
38161091--38161126	14	2.6	14	100	0	72	27	13	22	36	1.92
38161852--38161897	6	7.7	6	85	0	56	52	0	30	17	1.45
38163877--38163909	16	1.9	18	88	11	52	75	6	0	18	1.00
38163879--38163970	49	2.0	47	85	12	127	58	11	4	25	1.51
38165634--38165689	27	2.1	27	96	0	103	23	19	14	42	1.88
38166158--38166206	25	1.9	26	87	4	73	63	12	10	14	1.53
38166158--38166212	25	2.2	25	83	6	67	65	10	10	12	1.48
38167163--38167233	35	2.0	35	100	0	142	42	8	19	29	1.81
38167660--38167754	46	2.1	45	84	2	118	46	16	20	16	1.84
38175401--38175436	18	2.0	18	94	0	63	30	33	8	27	1.86
38185733--38185781	20	2.5	19	77	9	53	59	0	8	32	1.27
38192116--38192197	33	2.5	33	77	0	83	19	14	40	25	1.90
38210296--38210329	11	2.9	12	86	8	52	26	2	0	70	1.01
38210261--38210790	152	3.5	153	88	5	774	27	5	6	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38211054--38211078	12	2.1	12	100	0	50	24	16	16	44	1.86
38211406--38211435	3	10.0	3	92	0	51	3	63	0	33	1.11
38211574--38211640	27	2.5	27	85	4	82	14	38	28	17	1.90
38214784--38215051	46	5.7	47	74	18	213	26	29	16	26	1.97
38217573--38217988	205	2.0	205	99	0	823	38	12	13	35	1.84
38218500--38218834	69	4.9	69	72	4	217	27	15	26	30	1.96
38218272--38218879	138	4.4	138	77	3	526	28	17	24	29	1.97
38224894--38224991	27	3.5	28	90	2	135	26	13	28	31	1.94
38224922--38225004	27	3.0	27	87	5	96	30	12	25	32	1.92
38224894--38225005	28	4.0	27	83	6	98	28	12	25	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311