genome.fa.s12.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  143  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48405268--48405650	27	14.4	27	77	7	327	39	19	9	31	1.84
48405260--48405650	53	7.3	54	78	8	354	39	18	9	31	1.84
48405614--48405695	27	3.0	27	82	5	103	37	18	17	26	1.92
48408334--48408387	26	2.1	26	96	0	99	25	12	27	33	1.93
48408335--48408378	12	3.5	12	76	11	52	27	11	29	31	1.91
48408358--48408547	50	3.8	50	78	3	168	30	14	22	33	1.93
48412761--48412857	34	2.8	34	78	7	108	29	21	24	23	1.99
48420592--48420678	34	2.5	33	81	9	86	28	24	26	20	1.99
48425806--48425877	28	2.6	28	88	0	99	26	27	13	31	1.94
48435030--48435066	19	1.9	19	88	0	56	21	29	29	18	1.97
48445352--48445492	39	3.6	38	80	8	149	24	27	23	24	2.00
48452487--48452627	40	3.5	40	80	11	164	23	27	24	24	2.00
48457381--48457558	27	6.6	27	83	3	205	26	15	28	29	1.96
48457382--48457537	82	1.9	81	88	3	233	26	15	28	29	1.96
48457378--48457558	82	2.2	81	83	2	229	27	15	27	29	1.96
48465348--48465525	27	6.6	27	83	3	205	26	15	28	29	1.96
48465349--48465504	82	1.9	81	88	3	233	26	15	28	29	1.96
48465345--48465525	82	2.2	81	83	2	229	27	15	27	29	1.96
48468797--48469041	49	4.9	49	82	4	303	28	25	18	26	1.98
48503270--48503308	21	1.9	20	84	5	51	35	7	7	48	1.61
48507154--48507368	40	5.5	40	83	8	255	25	26	22	26	2.00
48507154--48507372	77	2.8	75	84	6	258	25	25	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48508692--48508716	13	1.9	13	100	0	50	60	16	0	24	1.36
48515107--48515364	40	6.5	40	90	2	344	25	27	22	24	2.00
48527278--48527543	48	5.6	49	78	11	191	23	30	19	27	1.98
48527418--48527588	92	1.8	93	86	5	247	22	30	19	26	1.98
48527271--48527589	47	6.8	46	76	14	242	23	29	19	26	1.98
48541990--48542041	20	2.6	20	76	11	61	34	15	1	48	1.56
48545357--48545386	15	2.0	15	100	0	60	53	13	13	20	1.72
48546748--48546920	46	3.7	46	81	10	208	22	21	27	28	1.99
48546742--48546912	93	1.8	93	91	0	279	22	22	26	28	1.99
48552185--48552441	55	4.8	55	78	10	243	36	16	25	21	1.94
48552491--48552535	23	1.9	24	86	4	65	42	8	24	24	1.83
48558470--48558502	17	1.9	18	88	11	52	45	0	12	42	1.41
48558529--48558581	23	2.3	23	80	6	63	49	0	11	39	1.39
48563940--48564157	46	4.7	46	77	9	196	26	19	30	23	1.98
48564132--48564213	28	2.9	28	94	0	146	28	23	29	19	1.98
48567106--48567227	46	2.7	46	94	0	208	30	28	20	20	1.98
48568626--48568827	40	5.0	40	90	3	291	26	28	22	21	1.99
48576782--48577039	40	6.5	40	87	2	342	26	27	22	23	2.00
48593230--48593470	49	4.9	49	81	3	275	27	27	19	25	1.99
48593239--48593470	100	2.3	98	83	2	293	28	27	18	25	1.98
48603227--48603251	8	3.1	8	100	0	50	24	40	12	24	1.88
48611002--48611186	40	4.7	40	81	7	200	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48611041--48611219	79	2.3	79	79	9	197	26	21	26	25	1.99
48613233--48613269	19	1.9	19	94	0	65	21	27	40	10	1.86
48621994--48622187	27	7.2	27	81	4	221	27	21	10	40	1.86
48621994--48622187	81	2.4	81	84	3	248	27	21	10	40	1.86
48622192--48622387	27	7.3	27	85	0	221	36	18	18	25	1.94
48622592--48622668	27	2.9	26	86	5	100	22	20	20	36	1.95
48622756--48622814	22	2.7	22	81	0	64	20	25	22	32	1.98
48622979--48623052	27	2.8	27	87	6	98	18	24	20	36	1.95
48623170--48623356	6	30.8	6	76	18	174	20	17	13	48	1.80
48623170--48623356	30	6.4	30	82	9	224	20	17	13	48	1.80
48623170--48623356	85	2.2	85	95	0	329	20	17	13	48	1.80
48624235--48624266	16	2.0	16	93	0	55	37	6	15	40	1.73
48625584--48625716	27	4.9	27	73	0	95	37	24	9	27	1.87
48625703--48626030	27	12.1	27	90	0	449	34	19	21	24	1.96
48626172--48626202	16	1.9	16	93	0	53	29	19	16	35	1.93
48626233--48626302	25	2.8	25	91	0	104	27	22	22	27	1.99
48626258--48626329	25	3.0	24	78	13	67	29	20	22	27	1.99
48628847--48628873	12	2.2	12	100	0	54	51	7	0	40	1.30
48629320--48629445	28	4.5	28	92	2	191	26	12	27	32	1.93
48629320--48629445	55	2.2	57	90	2	193	26	12	27	32	1.93
48629348--48629458	28	4.0	27	91	3	143	29	11	25	33	1.91
48644608--48644654	22	2.1	22	100	0	94	46	0	4	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48645539--48645630	25	3.7	25	73	2	78	31	22	17	28	1.97
48646468--48646516	24	2.0	24	100	0	98	46	12	8	32	1.71
48646764--48646793	16	1.9	16	93	6	53	30	0	20	50	1.49
48647199--48647433	116	2.0	116	98	0	452	26	5	26	41	1.76
48651693--48651789	44	2.3	43	82	5	108	27	15	22	34	1.94
48651713--48651812	44	2.3	44	80	3	112	31	17	21	31	1.95
48652676--48652772	30	3.2	30	77	2	115	20	28	26	23	1.99
48659064--48659391	50	6.5	50	78	2	307	27	16	24	31	1.96
48659059--48659350	101	2.9	101	86	1	397	26	17	24	31	1.97
48659116--48659399	151	1.9	152	85	0	399	27	17	23	30	1.97
48664051--48664138	44	2.0	43	91	2	140	39	19	6	34	1.78
48671587--48671791	27	7.6	27	86	3	259	30	27	15	26	1.96
48679699--48679904	27	7.6	27	85	4	252	30	28	15	26	1.96
48679699--48679904	83	2.5	82	82	4	254	30	28	15	26	1.96
48679697--48679903	110	1.9	109	88	3	301	29	28	14	26	1.96
48690827--48690871	18	2.4	18	85	3	54	46	4	2	46	1.35
48690841--48690880	18	2.2	18	95	0	71	40	7	0	52	1.30
48693604--48693643	6	6.7	6	100	0	80	17	50	0	32	1.47
48693885--48693955	16	4.4	16	83	3	81	42	7	22	28	1.79
48694103--48694152	26	2.0	26	88	4	75	42	0	4	54	1.19
48694128--48694253	57	2.1	58	81	10	139	50	3	0	44	1.26
48694553--48694598	21	2.2	20	82	14	58	54	8	0	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48699422--48699463	20	2.1	20	100	0	84	23	26	9	40	1.85
48705612--48705838	101	2.3	99	83	3	278	25	17	28	29	1.97
48705609--48705854	49	4.9	50	79	2	262	25	17	28	28	1.97
48712617--48712876	68	4.0	64	76	12	224	29	16	29	24	1.96
48712692--48712876	67	2.9	64	78	7	212	28	17	30	23	1.97
48721658--48721707	19	2.8	18	77	19	59	40	48	2	10	1.48
48723167--48723241	37	2.1	37	82	7	91	38	8	1	52	1.40
48723751--48723815	24	2.7	25	73	20	66	33	7	4	53	1.50
48726297--48726449	28	5.6	27	92	4	234	31	28	13	26	1.94
48726296--48726470	56	3.1	54	85	7	217	32	30	13	24	1.93
48736801--48737014	107	2.0	107	98	0	410	33	22	18	25	1.97
48739184--48739657	75	6.2	74	75	11	413	30	15	19	34	1.93
48739184--48739414	73	3.2	72	83	4	273	27	15	20	36	1.93
48739429--48739643	79	2.9	74	81	10	256	33	16	19	30	1.93
48739580--48739927	86	4.0	87	81	8	379	28	17	18	36	1.93
48739810--48739839	13	2.3	13	94	0	51	16	10	6	66	1.41
48739501--48739915	172	2.4	168	85	5	557	28	17	18	34	1.94
48739609--48739974	172	2.1	174	84	5	481	28	17	18	35	1.94
48740547--48740596	19	2.8	18	77	19	59	40	48	2	10	1.48
48742765--48742932	41	4.2	40	78	13	173	27	26	21	23	1.99
48745035--48745069	14	2.4	15	95	4	63	28	0	8	62	1.24
48746028--48746092	24	2.7	25	73	20	66	33	7	4	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48750295--48750364	32	2.2	32	92	0	113	44	15	20	20	1.87
48753167--48753214	25	1.9	25	91	0	78	37	22	12	27	1.90
48753258--48753295	20	1.9	20	94	0	67	36	10	21	31	1.87
48753346--48753440	23	4.1	23	90	5	138	29	20	18	31	1.96
48753345--48753461	24	5.0	24	86	7	143	29	20	20	29	1.98
48753655--48753718	31	2.1	31	90	0	101	39	15	21	23	1.92
48760184--48760232	25	2.0	25	91	0	80	32	20	28	18	1.96
48760225--48760283	24	2.4	24	77	8	66	44	20	18	16	1.87
48762270--48762317	16	2.9	16	80	17	62	50	0	0	50	1.00
48762270--48762320	18	3.0	18	86	11	72	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311