genome.fa.s12.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  200  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68901698--68901739	13	3.5	13	75	18	54	30	38	26	4	1.77
68901698--68901741	23	1.9	23	100	0	88	29	40	25	4	1.75
68903802--68903911	50	2.2	50	83	3	132	29	28	14	28	1.95
68903913--68904049	52	2.7	52	83	5	165	35	26	13	24	1.93
68905369--68905483	47	2.4	47	80	4	113	39	20	18	22	1.93
68905353--68905493	24	5.9	24	74	7	110	36	19	19	24	1.95
68905970--68906045	37	2.1	37	89	0	116	19	22	14	43	1.87
68911948--68912158	47	4.7	47	80	11	262	30	25	15	28	1.96
68911948--68912111	85	1.9	84	96	1	301	30	26	15	27	1.96
68912032--68912160	48	2.7	48	87	1	197	31	25	14	28	1.95
68911948--68912192	133	1.9	131	88	1	373	31	26	14	28	1.95
68914912--68914953	15	2.8	15	85	0	57	52	14	19	14	1.75
68916681--68916875	27	7.2	27	81	1	212	36	18	18	26	1.94
68916652--68916829	54	3.3	55	83	6	195	38	19	16	24	1.92
68917591--68917649	27	2.2	26	84	3	73	22	22	18	37	1.94
68920788--68921031	38	5.9	38	71	18	177	29	24	15	30	1.95
68920795--68921031	85	2.8	86	88	1	352	29	24	15	30	1.95
68920795--68921031	86	2.8	85	88	1	350	29	24	15	30	1.95
68934011--68934119	55	2.0	55	85	3	148	15	25	27	31	1.96
68938600--68938811	40	5.3	40	86	6	234	23	20	27	29	1.99
68941362--68941387	10	2.6	10	100	0	52	38	7	34	19	1.80
68942597--68942698	27	3.9	27	83	10	131	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68942614--68942660	23	2.0	23	95	0	85	36	17	23	23	1.95
68942679--68942806	54	2.4	54	84	2	141	41	20	10	28	1.84
68942693--68942787	27	3.5	27	72	5	93	43	23	6	27	1.78
68942710--68943217	27	18.8	27	80	2	160	39	21	9	29	1.85
68942692--68942809	54	2.2	54	90	0	182	41	22	8	27	1.82
68942710--68943133	54	7.9	54	79	3	239	40	21	8	28	1.84
68942710--68943076	81	4.5	81	78	4	339	40	22	8	28	1.84
68943055--68943190	55	2.5	55	80	8	143	42	15	10	31	1.80
68943677--68943742	22	3.0	22	78	8	80	19	27	22	30	1.98
68944470--68944746	109	2.6	107	76	5	288	40	22	9	28	1.84
68944462--68944860	27	14.7	27	79	1	258	40	20	9	29	1.84
68944813--68944887	27	2.8	27	83	4	80	36	21	13	29	1.91
68945347--68945412	22	3.0	22	76	8	71	19	25	22	31	1.98
68948072--68948106	10	3.6	10	88	3	54	14	22	45	17	1.84
68948245--68948649	54	7.5	52	78	7	242	39	20	9	29	1.85
68948245--68948557	81	3.9	80	77	6	256	39	21	9	28	1.85
68948253--68948647	27	14.6	27	80	4	150	39	21	9	29	1.85
68948490--68948642	55	2.8	54	81	3	155	41	20	9	28	1.83
68948906--68949021	41	2.9	40	87	6	139	23	20	28	27	1.99
68949168--68949232	22	3.0	22	77	8	69	20	24	23	32	1.98
68965080--68965125	22	2.1	22	95	0	83	34	19	17	28	1.94
68984708--68984833	25	5.1	25	76	7	132	24	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68984716--68984833	49	2.4	49	84	2	157	24	22	19	33	1.97
68985193--68985291	30	3.3	30	65	18	80	39	11	12	37	1.78
68985169--68985287	59	2.0	59	93	0	202	42	10	12	34	1.76
68986114--68986140	12	2.2	12	100	0	54	29	40	22	7	1.81
68991569--68991786	40	5.5	40	86	2	262	25	28	23	22	1.99
68999645--68999822	40	4.5	40	83	3	200	24	28	24	23	2.00
69006213--69006251	20	2.0	20	100	0	78	46	12	0	41	1.42
69007857--69008039	40	4.6	39	83	6	197	26	20	27	25	1.99
69007858--69008039	80	2.3	81	82	4	219	26	20	27	25	1.99
69007858--69008074	79	2.7	80	80	5	201	27	20	27	24	1.99
69032413--69032496	19	4.4	19	86	4	125	86	0	0	13	0.56
69032413--69032540	57	2.3	57	83	5	161	79	0	0	18	0.82
69032486--69032538	20	2.5	20	88	11	72	73	1	1	22	1.03
69032413--69032496	1	84.0	1	85	0	69	86	0	0	13	0.56
69032486--69032540	22	2.5	22	88	8	76	72	1	1	23	1.04
69032486--69032540	23	2.4	23	85	8	69	72	1	1	23	1.04
69037895--69037977	28	3.0	27	77	11	87	33	20	21	24	1.97
69037913--69037980	26	2.5	28	84	15	97	30	19	25	25	1.98
69037921--69037992	26	2.7	26	83	12	85	29	23	25	22	1.99
69039208--69039232	13	1.9	13	100	0	50	76	0	24	0	0.80
69045654--69045768	55	2.1	56	82	8	137	33	21	24	20	1.97
69045679--69045768	27	3.2	27	89	7	128	31	23	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69045874--69045937	28	2.3	27	94	2	110	29	7	28	34	1.85
69048435--69048517	25	3.4	25	72	3	78	27	18	27	26	1.98
69050078--69050116	17	2.2	18	86	4	53	20	28	35	15	1.93
69051514--69051720	53	3.8	54	80	1	209	20	23	17	37	1.94
69056083--69056390	45	6.9	45	87	2	381	26	27	22	23	2.00
69056388--69056468	38	2.1	38	88	0	117	34	23	19	22	1.96
69069807--69070063	40	6.5	40	89	3	351	25	26	22	24	2.00
69074779--69074928	39	3.8	40	87	3	189	24	25	28	22	2.00
69074779--69074928	79	1.9	79	83	8	198	24	25	28	22	2.00
69082901--69083049	40	3.8	39	87	4	192	24	25	28	22	1.99
69083951--69084020	35	2.0	34	97	2	131	24	20	25	30	1.99
69086394--69086522	46	2.8	46	95	0	222	19	21	29	29	1.98
69093889--69094064	46	3.8	46	79	12	216	20	21	29	28	1.98
69093886--69094057	93	1.8	93	96	0	317	20	21	29	27	1.98
69100122--69100337	47	4.6	47	91	2	335	28	30	7	33	1.86
69100122--69100337	96	2.3	93	91	2	333	28	30	7	33	1.86
69103564--69103752	40	4.7	40	87	2	272	25	25	22	25	2.00
69115610--69115639	13	2.3	13	94	0	51	43	16	10	30	1.81
69121619--69121850	49	4.7	49	81	2	284	26	18	26	28	1.98
69125503--69125676	93	1.9	93	89	2	269	29	28	19	22	1.98
69125498--69125683	46	4.0	48	73	15	158	30	27	18	22	1.98
69128757--69128813	23	2.5	23	97	0	105	42	7	12	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69132630--69132893	27	9.8	27	91	0	402	29	22	8	39	1.83
69132919--69133066	27	5.5	27	80	5	131	40	21	8	29	1.82
69132887--69133029	55	2.6	54	79	7	146	42	18	7	30	1.79
69133054--69133193	27	5.2	27	83	0	172	35	20	20	24	1.96
69133054--69133191	54	2.6	54	91	0	222	35	19	20	24	1.96
69133397--69133491	25	3.8	25	94	0	154	25	24	24	26	2.00
69133397--69133504	25	4.4	24	90	3	128	27	22	24	25	2.00
69133410--69133516	50	2.1	50	83	6	128	26	26	22	25	2.00
69137613--69137706	40	2.3	40	85	7	120	26	18	29	25	1.98
69140512--69140637	48	2.7	46	82	9	148	22	29	20	27	1.98
69140513--69140741	95	2.4	96	81	5	266	25	29	17	27	1.97
69141586--69141639	28	1.9	27	82	14	65	22	44	18	14	1.86
69142611--69142971	46	7.6	48	74	11	266	24	27	19	28	1.98
69147663--69147886	40	5.6	40	85	4	281	25	22	26	25	2.00
69147667--69147886	83	2.7	80	86	5	284	24	23	26	25	2.00
69154480--69154535	21	2.7	21	94	2	96	21	30	33	14	1.93
69155704--69155981	48	5.8	48	75	9	192	23	29	17	29	1.97
69155707--69155986	145	1.9	144	81	6	334	24	28	17	29	1.97
69162854--69162910	21	2.7	21	76	15	55	38	19	14	28	1.90
69165739--69165821	43	1.9	43	81	13	100	27	28	19	24	1.98
69172420--69172476	30	1.9	30	88	0	87	42	7	24	26	1.80
69183155--69183217	25	2.5	25	89	0	99	31	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69184783--69184876	35	2.7	35	90	3	145	30	19	12	37	1.89
69184783--69184910	35	3.7	35	86	2	141	29	17	14	38	1.89
69187374--69187414	15	2.7	15	88	11	57	2	21	0	75	0.92
69187375--69187412	20	1.9	20	84	10	51	2	18	0	78	0.86
69188597--69188639	19	2.2	20	87	4	61	30	11	11	46	1.76
69194894--69194984	45	2.0	45	83	8	114	42	21	9	25	1.84
69198190--69198307	29	4.1	29	80	4	96	28	14	30	26	1.95
69206922--69207033	42	2.7	42	74	0	107	31	27	15	25	1.95
69210434--69210657	39	5.7	39	89	0	304	30	28	20	20	1.97
69218487--69218710	39	5.7	38	84	4	286	31	29	19	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311