Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  282  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92313375--92313424
19
2.8
18
82
14
59
36
2
8
54
1.42
92313589--92313620
11
3.1
11
91
8
50
34
0
6
59
1.23
92313760--92313805
15
3.1
14
81
9
56
34
2
10
52
1.49
92313761--92313803
21
2.0
21
82
8
52
32
2
11
53
1.50
92322590--92322635
15
3.1
15
73
17
51
23
10
13
52
1.71
92323211--92323287
29
2.5
31
85
4
104
54
12
7
24
1.64
92325262--92325310
14
3.2
16
77
11
59
40
10
6
42
1.63
92325816--92325887
31
2.4
31
85
2
101
23
15
9
51
1.73
92325835--92325894
31
1.9
31
89
0
93
21
20
10
48
1.78
92328099--92328154
13
4.3
13
82
14
53
60
0
7
32
1.24
92328105--92328157
3
17.3
3
84
3
70
62
0
5
32
1.19
92328111--92328196
16
5.4
16
74
19
72
62
0
9
27
1.25
92338529--92338553
5
5.0
5
100
0
50
0
20
0
80
0.72
92340172--92340264
39
2.3
40
83
3
116
37
22
18
21
1.94
92340332--92340443
40
2.8
39
77
11
120
28
21
18
31
1.97
92340333--92340479
40
3.8
38
75
15
113
27
23
19
30
1.98
92341241--92341326
22
4.0
22
67
13
63
44
36
1
18
1.58
92341308--92341360
14
3.7
14
82
2
61
39
43
3
13
1.62
92342118--92342202
8
10.9
8
74
18
56
65
2
0
31
1.05
92342143--92342202
20
2.8
21
85
10
86
70
1
0
28
0.97
92346643--92346676
12
2.8
12
95
0
59
47
5
2
44
1.42
92346654--92346729
29
2.6
29
77
8
73
42
2
5
50
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92346837--92347022
43
4.3
43
82
4
216
24
14
26
33
1.94
92353323--92353398
38
2.0
38
100
0
152
28
18
7
44
1.78
92355633--92355672
21
1.9
21
85
10
55
50
0
0
50
1.00
92355982--92356040
27
2.1
28
87
9
86
66
0
0
33
0.92
92361052--92361079
14
2.0
14
100
0
56
21
21
21
35
1.96
92363887--92363928
19
2.2
19
100
0
84
76
4
4
14
1.12
92370486--92370520
18
2.1
16
89
10
52
28
0
0
71
0.86
92370692--92370734
19
2.3
18
84
8
50
46
0
2
51
1.13
92373378--92373434
20
2.8
19
76
10
60
33
1
7
57
1.36
92373420--92373490
21
3.3
22
72
7
56
35
5
2
56
1.38
92382105--92382145
21
2.0
21
81
18
50
21
26
19
31
1.97
92387147--92387277
56
2.3
56
93
0
226
45
10
14
29
1.78
92396416--92396444
2
14.5
2
100
0
58
51
0
0
48
1.00
92397982--92398042
22
2.8
22
79
0
68
16
24
16
42
1.88
92401311--92401374
31
2.1
31
90
0
101
21
23
15
39
1.92
92401583--92401662
23
3.4
24
91
6
128
26
22
21
30
1.99
92401708--92401758
20
2.5
20
93
0
84
31
21
11
35
1.90
92403001--92403075
27
2.8
27
78
11
82
21
20
21
37
1.95
92403113--92403362
27
9.2
27
73
9
132
32
11
17
39
1.85
92403203--92403329
54
2.4
54
85
5
168
29
8
19
41
1.81
92403207--92403362
81
1.9
81
82
10
194
30
10
18
40
1.85
92403361--92403492
27
4.9
27
88
3
169
39
8
23
28
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92403504--92403599
27
3.6
27
82
0
129
30
7
19
42
1.78
92404965--92405022
10
5.4
10
76
15
62
44
0
1
53
1.10
92405220--92405256
16
2.3
16
90
0
56
27
27
2
43
1.68
92405436--92405468
16
2.0
17
88
5
50
30
0
6
63
1.18
92405852--92405919
30
2.3
30
82
7
77
45
4
4
45
1.43
92409415--92409458
14
3.1
14
80
6
54
54
0
0
45
0.99
92409421--92409466
19
2.3
20
85
3
58
54
0
2
43
1.12
92410083--92410125
20
2.0
20
91
8
68
74
2
0
23
0.93
92410947--92410992
19
2.4
19
81
0
56
47
0
0
52
1.00
92414103--92414151
19
2.5
20
87
9
75
34
0
6
59
1.22
92416114--92416150
16
2.4
16
82
8
51
48
0
0
51
1.00
92417707--92417748
14
3.1
14
82
3
59
50
0
4
45
1.23
92423414--92423451
20
1.9
20
89
10
60
42
10
23
23
1.85
92425349--92425622
46
6.0
46
91
0
415
38
14
24
22
1.91
92429111--92429151
21
2.0
21
90
0
64
29
21
29
19
1.98
92431998--92432052
17
3.1
17
78
7
56
61
0
3
34
1.13
92432269--92432302
16
2.0
17
88
11
52
70
0
0
29
0.87
92436465--92436516
24
2.2
24
89
0
77
55
9
1
32
1.43
92438432--92438483
24
2.2
24
89
0
77
55
9
1
32
1.43
92449076--92449127
15
3.6
14
82
7
59
26
5
0
67
1.13
92452181--92452295
30
4.0
29
71
17
80
53
2
0
42
1.20
92452246--92452282
16
2.2
17
90
4
58
70
5
0
24
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92466795--92466835
21
2.0
21
81
18
50
31
19
26
21
1.97
92480105--92480133
12
2.5
12
94
5
51
68
0
0
31
0.89
92482704--92482759
20
2.9
18
80
17
60
62
0
1
35
1.06
92483148--92483489
175
2.0
175
100
0
684
31
8
21
38
1.83
92484068--92484136
30
2.3
30
82
2
95
49
0
11
39
1.39
92506876--92507029
80
2.0
77
85
3
209
55
9
7
27
1.58
92507208--92507304
33
3.0
33
84
3
124
25
13
47
13
1.79
92508878--92508969
40
2.2
42
86
3
125
56
8
1
33
1.37
92530958--92530999
22
1.9
22
85
0
57
38
0
7
54
1.28
92534842--92534870
8
3.6
8
100
0
58
62
0
0
37
0.96
92535548--92535600
24
2.3
23
81
15
58
47
3
11
37
1.58
92538008--92538054
14
3.4
14
82
5
69
55
8
10
25
1.62
92538000--92538065
14
5.1
13
78
10
64
59
9
10
21
1.58
92538004--92538065
27
2.3
27
97
2
117
58
9
9
22
1.59
92538370--92538437
18
3.6
18
77
14
66
69
2
2
25
1.17
92538378--92538458
39
2.1
39
81
9
94
69
1
3
25
1.13
92538406--92538464
24
2.5
24
83
5
75
71
0
3
25
1.02
92538422--92538468
9
5.2
9
80
10
51
72
0
2
25
0.96
92538358--92538461
15
7.1
15
69
14
65
68
1
4
25
1.20
92538368--92538468
21
4.9
20
75
13
82
68
1
2
26
1.15
92539732--92540062
88
3.8
88
83
0
430
22
22
19
34
1.96
92539728--92540062
176
1.9
176
88
1
501
22
22
19
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92540006--92540280
44
6.3
44
71
14
246
23
21
20
34
1.97
92540006--92540343
88
3.9
84
77
12
274
23
21
21
34
1.97
92539918--92540190
130
2.1
131
88
5
401
23
21
20
34
1.97
92539842--92540280
218
2.0
219
88
3
652
23
21
20
34
1.97
92539742--92540343
306
2.0
307
86
3
836
23
21
20
34
1.97
92552347--92552392
21
2.2
21
88
0
65
71
2
8
17
1.21
92552353--92552384
15
2.1
15
94
0
55
75
3
6
15
1.14
92552344--92552392
15
3.5
15
81
8
50
73
2
8
16
1.16
92554425--92554522
48
2.0
48
98
0
187
25
19
11
43
1.84
92558527--92558578
3
17.0
3
96
4
95
65
0
0
34
0.93
92560621--92560796
46
3.8
46
78
10
196
19
20
30
29
1.97
92560617--92560789
93
1.9
93
92
0
292
19
20
31
28
1.97
92562233--92562278
24
2.0
23
86
4
65
10
2
41
45
1.51
92562655--92562761
45
2.4
45
81
9
130
30
16
22
29
1.96
92563037--92563189
45
3.5
43
70
13
114
22
22
18
36
1.95
92562597--92563106
217
2.3
221
84
5
669
23
21
20
33
1.97
92563034--92563240
88
2.3
87
82
4
236
21
20
20
37
1.95
92563307--92563457
44
3.5
42
75
9
133
21
22
23
32
1.98
92576030--92576067
3
12.7
3
100
0
76
65
0
0
34
0.93
92579085--92579144
17
3.4
17
72
17
59
58
1
3
36
1.25
92581277--92581522
50
5.0
50
87
8
355
33
14
22
29
1.94
92581298--92581482
92
2.0
92
93
0
316
33
14
23
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92588100--92588313
101
2.1
102
92
0
349
33
14
22
29
1.94
92588100--92588310
51
4.2
51
92
1
334
33
15
22
29
1.94
92590570--92590624
5
10.6
5
86
5
74
41
0
1
56
1.10
92593681--92593722
4
10.0
4
85
10
57
0
23
0
76
0.79
92593682--92593722
13
3.1
13
89
10
57
0
24
0
75
0.80
92593681--92593722
17
2.5
17
88
11
68
0
23
0
76
0.79
92593681--92593720
21
2.0
20
95
5
71
0
22
0
77
0.77
92599062--92599112
3
17.0
3
78
8
50
33
35
1
29
1.69
92611524--92611583
27
2.2
27
82
11
70
73
10
1
15
1.17
92612458--92612512
27
2.0
27
86
6
76
41
0
9
49
1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311