genome.fa.s12.2.7.7.80.10.50.1000.268.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  268  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88692077--88692114	20	1.9	20	84	10	51	47	0	10	42	1.38
88694829--88694870	22	2.0	21	90	4	66	64	9	14	11	1.50
88699297--88699328	3	10.7	3	100	0	64	65	0	0	34	0.93
88706599--88706665	10	6.8	10	72	13	50	35	4	0	59	1.18
88706603--88706665	30	2.1	30	81	0	72	33	4	0	61	1.17
88707241--88707280	16	2.3	18	83	12	57	40	0	0	60	0.97
88707247--88707294	22	2.1	23	85	11	64	39	0	0	60	0.97
88707891--88707932	22	1.9	22	85	9	59	38	0	9	52	1.34
88717508--88717542	17	2.1	17	88	0	52	82	0	17	0	0.66
88720051--88720099	26	2.0	25	84	8	64	53	2	0	44	1.12
88725196--88725221	8	3.2	8	100	0	52	88	0	0	11	0.52
88728322--88728552	115	2.0	114	80	5	259	51	3	10	35	1.53
88730017--88730085	35	2.0	35	100	0	138	34	26	20	18	1.96
88733445--88733496	20	2.6	20	84	6	61	46	19	1	32	1.61
88738060--88738130	4	17.8	4	75	18	60	71	0	25	2	0.99
88738068--88738130	21	3.0	21	80	17	69	73	0	23	3	0.98
88738734--88739069	131	2.6	131	87	5	454	36	18	17	27	1.93
88740334--88740472	39	3.6	39	88	2	192	50	5	14	30	1.64
88740334--88740483	77	1.9	78	86	4	214	48	5	17	29	1.69
88748387--88749655	210	6.1	210	90	2	1939	28	18	22	30	1.97
88749853--88749936	45	1.9	45	85	4	118	33	13	27	26	1.93
88749870--88749955	45	1.9	45	88	4	129	29	15	30	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88751238--88751281	2	22.0	2	100	0	88	0	0	50	50	1.00
88751437--88751493	15	3.9	15	88	2	89	35	0	12	52	1.39
88751433--88751491	30	2.0	28	93	6	100	32	0	11	55	1.36
88751878--88751952	21	3.4	23	76	14	86	13	20	26	40	1.89
88752114--88752154	19	2.2	19	87	12	59	46	0	24	29	1.53
88755162--88755307	53	2.7	53	80	8	170	28	15	25	30	1.95
88757120--88757269	39	3.9	38	88	4	194	47	5	18	29	1.70
88757120--88757269	77	1.9	78	86	4	214	47	5	18	29	1.70
88757764--88757836	35	2.1	35	94	0	128	36	8	5	49	1.56
88758198--88758238	16	2.5	17	92	4	66	36	34	4	24	1.77
88759147--88759180	16	2.1	16	94	0	59	41	0	8	50	1.34
88762241--88762299	24	2.5	24	88	0	91	44	0	25	30	1.55
88762365--88762429	20	3.4	19	69	14	62	35	4	15	44	1.67
88762340--88762452	37	3.1	37	93	1	183	32	5	15	46	1.68
88762352--88762409	17	3.2	17	68	13	53	34	3	12	50	1.57
88762453--88762571	9	12.6	9	89	7	166	21	9	31	37	1.85
88764726--88764752	14	1.9	14	100	0	54	51	3	7	37	1.48
88770057--88770122	18	3.6	18	85	2	87	0	33	0	66	0.92
88770057--88770116	22	3.0	21	86	13	74	0	33	0	66	0.92
88786490--88786569	42	1.9	42	94	0	142	38	10	15	36	1.80
88791441--88791512	28	2.8	25	82	6	81	44	1	0	54	1.08
88791462--88791513	17	3.1	17	78	8	61	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88793507--88793538	4	8.0	4	92	0	55	28	0	25	46	1.53
88794031--88794073	22	1.9	23	95	4	79	44	0	0	55	0.99
88798762--88798832	30	2.3	30	85	11	90	53	4	0	42	1.20
88798760--88798843	30	2.8	30	81	13	86	52	3	0	44	1.18
88804339--88804394	27	2.0	26	83	10	67	58	0	1	39	1.08
88807140--88807194	24	2.3	24	83	0	65	49	10	5	34	1.61
88807972--88808003	12	2.7	12	90	0	55	65	0	0	34	0.93
88810390--88810675	41	7.0	41	87	2	387	34	25	20	19	1.96
88810389--88810724	123	2.7	123	86	0	458	34	24	20	20	1.97
88810811--88810845	17	2.0	17	88	5	52	20	0	14	65	1.26
88811559--88811609	21	2.4	21	86	0	84	11	3	31	52	1.56
88811942--88811986	20	2.1	21	88	8	65	44	0	4	51	1.21
88811917--88812257	147	2.3	147	92	2	594	47	2	2	47	1.29
88812023--88812154	60	2.3	59	84	8	166	47	2	3	46	1.30
88812071--88812195	32	4.0	32	73	19	97	47	2	2	48	1.28
88812116--88812263	40	3.5	41	71	16	104	48	2	2	47	1.24
88815264--88815299	8	4.6	8	86	6	56	77	0	0	22	0.76
88815267--88815296	15	1.9	16	93	6	53	73	0	0	26	0.84
88815885--88815919	3	11.3	3	87	6	52	31	0	2	65	1.07
88816443--88816481	21	1.9	21	89	5	62	25	2	7	64	1.33
88826631--88827237	73	8.2	72	84	7	730	29	15	21	33	1.94
88826643--88829634	148	19.3	148	69	16	1158	29	16	20	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88827337--88828259	75	12.2	74	76	13	796	29	16	20	33	1.94
88828376--88829706	75	17.5	75	73	13	847	30	16	20	32	1.95
88828667--88829053	73	5.3	73	81	4	429	29	16	20	32	1.95
88828684--88829583	147	5.9	148	76	13	616	30	16	20	32	1.95
88829153--88829634	76	6.5	75	84	5	570	31	17	20	30	1.96
88829153--88829634	149	3.2	147	84	4	646	31	17	20	30	1.96
88829153--88829706	147	3.7	145	80	8	584	31	17	20	30	1.95
88829153--88829706	149	3.7	142	82	7	549	31	17	20	30	1.95
88829724--88829757	13	2.6	13	85	0	50	17	11	2	67	1.34
88831231--88831256	5	5.2	5	100	0	52	23	57	19	0	1.40
88832115--88832153	21	1.9	20	89	5	60	23	2	10	64	1.37
88833421--88833477	9	6.7	9	80	11	75	28	0	10	61	1.29
88833429--88833483	8	6.6	8	83	4	56	30	0	9	60	1.28
88833421--88833468	16	2.9	17	93	6	89	29	0	10	60	1.30
88833437--88833498	26	2.4	25	84	10	79	29	1	8	61	1.34
88835565--88835887	27	12.0	27	80	8	309	28	21	8	41	1.82
88835560--88835886	54	6.1	54	87	0	395	28	21	8	41	1.83
88835564--88835890	81	4.0	81	81	2	370	28	20	8	41	1.82
88835903--88836089	27	6.9	27	83	0	221	35	17	20	26	1.95
88835895--88836089	54	3.6	54	86	2	248	35	16	20	27	1.94
88836740--88836841	27	3.8	27	84	5	125	18	22	21	37	1.94
88836990--88837033	19	2.3	19	84	0	52	22	22	11	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88839272--88839303	13	2.4	14	94	5	57	37	0	9	53	1.34
88839716--88839767	21	2.5	21	83	0	68	26	21	48	3	1.67
88840009--88840093	31	2.7	31	96	0	152	14	5	21	58	1.56
88844979--88845031	18	2.6	20	77	20	56	33	3	11	50	1.56
88845172--88845230	25	2.4	24	80	8	64	28	25	18	27	1.98
88845577--88845616	20	2.0	20	100	0	80	35	20	10	35	1.86
88848758--88848826	21	3.4	21	71	15	72	36	1	7	55	1.37
88848813--88848843	15	2.1	14	94	5	53	35	3	6	54	1.42
88860382--88860472	43	2.1	43	85	0	119	38	20	18	21	1.93
88860473--88860606	43	3.1	43	86	5	171	28	17	19	35	1.94
88860473--88860606	44	3.1	43	88	3	180	28	17	19	35	1.94
88866584--88866628	20	2.3	20	84	3	56	31	15	24	28	1.96
88866621--88866793	61	2.8	61	80	8	176	27	20	24	27	1.99
88869861--88869980	36	3.2	37	84	5	161	23	14	47	15	1.81
88870809--88870840	15	2.1	15	94	0	55	28	6	0	65	1.16
88870975--88871008	17	1.9	17	88	5	50	47	35	2	14	1.60
88874251--88874275	4	6.2	4	100	0	50	76	0	24	0	0.80
88882212--88882329	32	3.8	31	73	16	102	31	0	2	66	1.05
88882221--88882266	19	2.2	22	85	11	62	23	0	4	71	1.03
88882232--88882285	29	2.0	26	85	10	72	29	0	3	66	1.09
88882232--88882274	19	2.2	20	83	4	52	27	0	4	67	1.10
88882256--88882324	16	4.1	16	74	9	66	36	0	1	62	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88893555--88893705	53	2.8	53	89	4	214	29	27	16	25	1.97
88900591--88900736	53	2.7	53	89	4	204	30	28	15	26	1.96
88902254--88902336	44	1.9	43	85	7	114	24	26	19	30	1.98
88907347--88907497	53	2.8	53	89	4	214	29	27	16	25	1.97
88908513--88908544	8	4.0	8	91	0	55	53	25	21	0	1.46
88908791--88908851	26	2.3	27	80	11	72	31	27	13	27	1.94
88910008--88910041	18	2.0	17	88	11	52	41	17	14	26	1.88
88911586--88911896	46	6.7	46	90	0	415	21	24	14	39	1.91
88913942--88913978	20	1.9	20	88	5	58	51	8	0	40	1.32
88916084--88916165	18	4.3	18	64	27	53	29	4	10	54	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311