genome.fa.s12.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  154  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52353424--52353614	43	4.6	40	81	4	177	23	28	20	27	1.99
52353504--52353674	43	4.0	42	82	10	186	24	29	21	24	1.99
52353505--52353668	86	1.9	85	82	8	208	23	30	21	23	1.99
52355553--52355582	15	2.1	15	93	6	53	36	26	6	30	1.82
52357918--52357987	31	2.3	30	90	7	106	71	0	18	10	1.13
52358308--52358382	36	2.1	36	89	0	114	36	12	17	34	1.87
52363329--52363424	50	1.9	50	89	0	147	27	27	18	27	1.98
52364326--52364516	69	2.8	68	83	3	238	43	16	11	28	1.82
52364713--52364869	68	2.3	68	82	3	183	43	17	12	26	1.85
52379202--52379319	43	2.8	42	85	1	146	32	33	16	17	1.93
52384316--52384446	32	3.9	31	73	19	88	32	5	15	47	1.68
52384402--52384485	31	2.8	30	80	8	82	36	2	14	46	1.57
52386968--52387011	21	2.1	21	82	0	52	31	9	9	50	1.65
52392310--52392429	47	2.6	47	94	0	213	25	28	17	28	1.98
52395542--52395571	15	2.0	15	93	0	51	20	10	26	43	1.83
52399278--52399408	49	2.7	49	81	0	145	32	19	23	24	1.98
52403357--52403392	17	2.2	17	95	5	65	66	5	11	16	1.40
52403364--52403420	16	3.5	16	79	15	64	61	1	12	24	1.40
52403532--52403571	15	2.6	15	88	4	53	70	0	7	22	1.12
52403547--52403867	3	105.7	3	69	12	156	59	4	7	29	1.44
52413952--52414005	24	2.2	24	84	12	67	29	37	16	16	1.91
52421879--52421932	24	2.2	24	84	12	67	29	37	16	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52426636--52426806	46	3.7	46	79	6	175	21	29	19	29	1.98
52435843--52435957	42	2.7	43	80	4	128	30	26	16	26	1.97
52440222--52440371	67	2.2	67	81	8	171	32	17	28	21	1.96
52440246--52440429	67	2.8	64	77	8	194	29	17	29	22	1.97
52442728--52442768	20	2.0	20	90	0	64	43	9	24	21	1.83
52443260--52443337	40	2.0	39	92	2	129	43	11	14	30	1.80
52443323--52443479	47	3.3	46	90	1	233	52	12	8	27	1.67
52446430--52446606	49	3.6	49	79	5	180	27	20	26	25	1.99
52456487--52456572	43	2.0	43	82	8	104	26	25	19	27	1.99
52465103--52465131	13	2.2	13	100	0	58	27	0	10	62	1.28
52469469--52469514	10	4.5	10	81	5	56	15	23	21	39	1.92
52469466--52469514	21	2.4	20	89	3	71	14	22	22	40	1.90
52469739--52469767	13	2.2	13	100	0	58	27	0	10	62	1.28
52472029--52472196	46	3.6	45	76	12	180	21	20	28	29	1.98
52472026--52472197	93	1.8	93	92	2	292	21	20	29	28	1.98
52480916--52481013	40	2.5	39	81	5	115	27	30	17	24	1.97
52482862--52482990	46	2.8	46	82	5	163	25	19	30	24	1.98
52483735--52483775	22	1.9	21	85	5	55	36	7	12	43	1.70
52484376--52484415	21	2.0	20	90	5	62	10	37	27	25	1.88
52485941--52485998	23	2.6	22	79	12	66	31	24	12	32	1.91
52506686--52506743	24	2.4	25	85	2	82	17	20	20	41	1.90
52508915--52509062	42	3.4	44	74	10	117	24	16	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52510357--52510395	19	1.9	20	85	15	53	35	0	17	46	1.49
52516519--52516663	42	3.4	41	78	11	132	26	17	22	33	1.96
52518412--52518585	46	3.7	46	77	10	158	28	19	28	23	1.98
52518415--52518630	46	4.7	45	71	15	120	28	18	28	24	1.98
52530006--52530081	38	2.0	38	94	0	134	23	18	17	40	1.91
52545820--52546210	44	8.5	44	68	15	159	32	18	19	28	1.96
52545862--52546402	94	5.8	94	81	2	550	33	18	18	29	1.95
52545775--52546028	138	1.8	138	84	3	350	30	18	22	28	1.97
52545862--52546404	188	2.9	189	82	4	643	33	18	18	29	1.95
52546106--52546277	50	3.6	50	72	16	182	30	18	20	30	1.96
52545862--52546398	282	1.9	282	79	3	614	33	18	18	29	1.95
52548786--52549000	40	5.4	40	91	2	328	22	21	28	26	1.99
52553306--52553332	14	1.9	14	100	0	54	44	7	0	48	1.31
52553305--52553339	14	2.4	14	85	4	52	54	5	0	40	1.24
52562541--52562583	18	2.3	19	84	15	54	30	6	2	60	1.35
52564902--52564961	9	6.6	9	76	16	61	16	1	8	73	1.16
52566916--52567100	40	4.7	40	82	6	216	25	27	22	23	2.00
52566918--52567100	79	2.3	80	81	7	212	25	27	22	24	2.00
52574343--52574556	90	2.3	92	85	4	290	44	14	7	32	1.74
52578509--52578549	12	3.2	13	80	13	57	56	9	7	26	1.58
52581290--52581384	41	2.3	42	80	10	106	26	15	27	30	1.96
52585779--52585949	93	1.8	93	87	0	252	30	28	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52585774--52585944	46	3.7	46	75	10	168	31	27	18	22	1.97
52588327--52588406	15	5.4	15	72	12	67	57	11	18	12	1.64
52588338--52588415	15	5.2	15	72	9	61	55	12	17	14	1.70
52601213--52601248	19	1.9	19	88	5	56	44	11	0	44	1.39
52604874--52605038	42	3.9	41	73	4	123	29	25	15	29	1.96
52606893--52606918	13	2.0	13	100	0	52	38	7	15	38	1.76
52620051--52620215	42	3.9	42	76	10	158	29	25	16	27	1.97
52622655--52622694	21	2.0	21	85	5	55	20	30	37	12	1.89
52623939--52624059	48	2.6	46	82	7	154	21	25	21	31	1.98
52623890--52624059	92	1.8	92	84	5	234	22	26	20	30	1.98
52628583--52628661	37	2.1	37	90	0	122	25	31	18	24	1.98
52628780--52628923	47	3.1	47	85	2	191	26	31	10	31	1.90
52632768--52632990	40	5.6	40	82	5	238	24	26	22	26	2.00
52632755--52632990	120	2.0	120	82	5	289	25	26	22	26	2.00
52633296--52633374	29	2.7	29	86	5	106	27	32	15	24	1.95
52633356--52633501	43	3.4	43	96	0	274	27	34	14	23	1.93
52635356--52635434	37	2.1	37	90	0	122	25	31	18	24	1.98
52635553--52635696	47	3.1	47	85	2	191	26	31	10	31	1.90
52641415--52641602	40	4.7	40	86	3	263	26	26	22	24	2.00
52651019--52651193	49	3.5	49	85	4	244	30	25	18	26	1.98
52651006--52651200	49	3.9	49	83	4	239	29	25	18	26	1.98
52651000--52651198	100	2.0	100	93	0	344	29	25	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52655352--52655410	6	9.7	6	75	17	59	47	15	18	18	1.83
52655361--52655439	31	2.5	31	83	4	97	49	13	17	18	1.80
52655833--52655975	27	5.3	27	83	1	178	27	19	18	34	1.96
52655833--52655968	55	2.5	54	86	1	191	26	20	19	33	1.96
52655832--52656002	82	2.1	81	82	5	220	27	17	19	35	1.94
52655987--52656264	27	10.6	27	75	7	144	30	6	22	39	1.80
52666958--52667133	46	3.8	45	78	10	194	20	20	30	28	1.98
52666955--52667125	93	1.8	93	92	0	288	20	21	30	28	1.98
52673199--52673237	20	2.0	20	85	10	53	35	17	0	46	1.49
52680236--52680317	43	1.9	43	84	0	110	28	29	19	23	1.98
52682441--52682617	72	2.5	72	81	5	198	30	28	18	22	1.97
52692825--52692886	26	2.3	27	83	10	83	35	27	8	29	1.85
52692992--52693104	27	4.2	27	89	3	158	19	24	21	34	1.96
52692997--52693100	55	1.9	55	92	5	176	20	25	20	34	1.96
52699613--52699869	40	6.5	40	88	2	358	27	27	21	22	1.99
52699613--52699869	79	3.2	79	87	2	347	27	27	21	22	1.99
52699646--52699866	119	1.9	120	91	0	363	28	27	21	22	1.99
52707185--52707430	40	6.2	40	91	2	374	27	28	21	22	1.99
52707208--52707430	79	2.8	79	93	2	367	28	28	21	21	1.99
52707185--52707430	119	2.1	119	89	5	374	27	28	21	22	1.99
52712078--52712260	79	2.3	81	83	7	223	24	22	27	24	2.00
52712079--52712262	40	4.6	40	82	9	207	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52712131--52712295	79	2.1	79	83	6	201	26	21	27	24	1.99
52718981--52719111	40	3.3	40	88	2	192	23	19	27	29	1.99
52719009--52719158	40	3.8	38	80	10	131	25	22	28	24	1.99
52719049--52719171	40	3.1	39	80	6	97	26	21	28	23	1.99
52726531--52726714	40	4.6	40	82	6	196	23	20	27	28	1.99
52726531--52726711	80	2.3	81	83	9	221	23	20	27	27	1.99
52726612--52726761	40	3.8	38	80	10	131	25	22	28	24	1.99
52730207--52730258	22	2.4	22	87	9	72	38	5	17	38	1.74
52730368--52730550	79	2.3	81	81	7	205	24	23	27	24	2.00
52730368--52730552	40	4.7	40	82	6	207	24	23	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311