genome.fa.s12.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  163  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55707155--55707336	28	6.5	28	94	1	294	26	12	27	33	1.92
55709651--55709708	20	2.9	20	78	0	71	22	31	29	17	1.96
55710571--55710629	30	1.9	31	90	10	95	47	3	20	28	1.66
55710867--55710904	13	2.9	13	92	0	58	52	0	2	44	1.14
55714234--55714428	27	7.3	27	89	3	259	28	25	8	38	1.84
55714246--55714428	80	2.3	80	88	2	260	28	25	7	38	1.82
55714234--55714428	107	1.8	107	88	2	302	28	25	8	38	1.84
55714243--55714467	107	2.1	107	81	6	260	31	23	9	36	1.87
55714460--55714637	27	6.6	27	79	2	133	40	19	8	30	1.83
55714427--55714555	54	2.4	54	82	7	138	39	17	12	30	1.87
55714427--55714590	81	2.0	80	82	9	199	39	17	11	31	1.85
55714460--55714610	54	2.8	54	80	0	149	42	19	7	30	1.79
55714460--55714637	81	2.2	81	83	2	214	40	19	8	30	1.83
55714658--55714731	27	2.7	27	78	12	71	40	20	17	21	1.91
55714671--55714734	27	2.4	27	84	5	76	39	17	21	21	1.93
55715544--55715613	25	2.8	25	88	0	104	27	22	22	27	1.99
55715543--55715638	25	3.9	24	78	9	86	28	20	22	28	1.99
55715833--55715915	31	2.7	31	87	3	116	27	14	26	31	1.95
55717154--55717347	27	7.2	27	87	1	255	29	24	6	39	1.81
55717154--55717347	81	2.4	81	89	1	282	29	24	6	39	1.81
55717343--55717485	27	5.3	26	73	10	108	38	21	10	29	1.87
55717350--55717481	54	2.4	54	81	5	151	38	20	11	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55717383--55717506	27	4.6	27	84	0	140	42	20	7	29	1.79
55717383--55717584	54	3.7	54	75	5	172	40	17	9	32	1.82
55717484--55717569	27	3.1	27	79	14	86	39	13	9	37	1.78
55717622--55717687	27	2.4	27	85	5	80	40	18	19	21	1.91
55717622--55717699	27	2.9	27	80	3	68	38	19	19	23	1.93
55718436--55718466	16	1.9	16	93	0	53	29	19	16	35	1.93
55718497--55718566	25	2.8	25	93	0	113	27	25	22	24	2.00
55718496--55718591	25	3.9	24	81	9	95	28	23	22	25	2.00
55718497--55718591	50	1.9	50	80	8	113	28	24	23	24	2.00
55719463--55719579	26	4.7	26	73	14	86	18	20	17	42	1.89
55726635--55726694	23	2.5	24	81	8	68	26	23	25	25	2.00
55726657--55726736	22	3.5	21	73	13	61	37	18	23	20	1.94
55730196--55730367	93	1.8	93	94	0	308	27	29	21	21	1.99
55730189--55730364	46	3.8	46	78	12	207	28	28	21	21	1.98
55737706--55737877	93	1.8	93	94	0	308	27	29	21	21	1.99
55737699--55737874	46	3.8	46	78	12	207	28	28	21	21	1.98
55745393--55745565	49	3.6	48	76	14	178	28	28	20	21	1.98
55745394--55745568	98	1.8	94	90	4	278	28	29	20	22	1.98
55755765--55756583	47	18.0	47	91	7	1302	32	8	28	29	1.87
55755765--55756583	93	9.0	94	91	7	1302	32	8	28	29	1.87
55755765--55756583	184	4.5	185	91	6	1263	32	8	28	29	1.87
55756702--55756778	36	2.1	36	88	4	111	24	19	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55758615--55758707	41	2.3	41	96	3	170	24	13	33	27	1.94
55758695--55758771	27	2.8	29	82	11	99	25	14	32	27	1.94
55759143--55759297	40	3.9	40	86	0	193	22	21	30	25	1.99
55762556--55763036	47	10.1	47	93	3	802	31	8	30	29	1.87
55762556--55763036	96	5.0	95	95	2	815	31	8	30	29	1.87
55762556--55763036	143	3.4	143	95	1	851	31	8	30	29	1.87
55763154--55763232	37	2.1	37	90	0	122	24	18	31	25	1.98
55767765--55767870	27	4.0	27	81	6	117	37	18	24	18	1.94
55769033--55769065	16	2.1	16	94	0	57	54	6	33	6	1.50
55770532--55770598	32	2.1	33	97	2	127	29	34	8	26	1.87
55775638--55775721	27	3.1	27	81	13	109	39	23	21	15	1.92
55781008--55781066	29	2.0	29	86	0	91	28	32	13	25	1.94
55783128--55783280	39	3.9	39	83	0	162	32	26	22	18	1.97
55783149--55783325	78	2.3	79	80	2	203	29	24	23	22	1.99
55783176--55783303	39	3.3	39	87	0	166	30	25	24	19	1.98
55783210--55783362	40	3.9	40	84	4	168	27	24	24	24	2.00
55785261--55785367	53	2.0	53	98	0	205	23	25	16	34	1.95
55786511--55786568	29	2.0	29	100	0	116	34	31	10	24	1.89
55792989--55793075	29	3.1	28	75	9	88	27	33	13	25	1.94
55797915--55798039	26	5.0	26	80	7	134	20	20	20	39	1.93
55812042--55812119	24	3.2	24	80	5	77	23	23	19	34	1.96
55835557--55835681	29	4.3	29	83	1	153	30	29	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55842332--55842367	18	2.0	18	94	0	63	41	0	30	27	1.56
55842945--55842999	20	2.8	19	78	5	65	34	5	20	40	1.75
55850108--55850318	27	7.8	27	88	0	251	28	22	8	40	1.82
55850311--55850518	54	3.9	52	80	6	211	41	20	8	29	1.81
55850297--55850544	81	3.0	81	84	7	299	41	20	8	30	1.81
55850311--55850492	27	6.8	27	81	8	210	41	20	8	29	1.81
55850528--55850579	27	1.9	27	88	7	79	40	11	11	36	1.78
55850624--55850720	27	3.6	27	84	5	90	34	21	23	20	1.97
55851434--55851461	8	3.5	8	100	0	56	42	21	21	14	1.88
55851881--55851928	25	2.0	24	83	4	60	31	25	18	25	1.98
55851967--55852023	9	5.9	9	73	15	51	35	8	21	35	1.84
55851965--55852035	20	3.5	20	94	0	124	35	11	21	32	1.89
55851976--55852030	11	5.4	11	70	16	55	36	12	20	30	1.90
55852080--55852229	24	6.3	24	88	3	187	29	20	20	29	1.98
55852080--55852229	47	3.2	47	83	4	194	29	20	20	29	1.98
55852080--55852229	71	2.1	71	88	0	219	29	20	20	29	1.98
55852440--55852503	31	2.1	31	90	0	101	35	15	23	25	1.94
55854105--55854176	24	2.9	24	83	4	90	23	15	31	29	1.95
55854114--55854186	24	3.0	22	79	15	74	21	16	32	28	1.95
55856839--55856877	19	2.0	20	95	5	71	23	0	5	71	1.05
55856839--55856913	19	3.4	23	82	13	70	25	0	6	68	1.14
55857196--55857241	24	1.9	24	90	0	74	28	4	4	63	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55862723--55862774	26	2.0	26	96	0	95	30	17	15	36	1.91
55868724--55868889	46	3.6	46	82	4	192	44	21	14	19	1.86
55868725--55868943	23	9.6	23	74	3	136	45	20	13	20	1.85
55868725--55868943	91	2.4	91	77	5	226	45	20	13	20	1.85
55871571--55871605	15	2.3	15	85	0	52	22	11	11	54	1.68
55877907--55878076	46	3.7	45	80	10	170	24	31	20	24	1.98
55882028--55882186	35	4.5	35	80	0	165	30	10	18	41	1.83
55901414--55901529	46	2.6	44	83	6	135	26	29	16	27	1.97
55901452--55901566	46	2.5	46	81	7	126	26	30	16	26	1.97
55907253--55907291	20	1.9	21	85	15	55	30	17	2	48	1.61
55910834--55910979	47	3.1	47	92	2	240	30	10	13	45	1.77
55911788--55912006	45	5.0	45	85	5	270	25	22	27	24	2.00
55911787--55912006	88	2.5	89	85	5	295	25	22	27	24	2.00
55913941--55914124	40	4.6	39	77	8	165	27	27	21	23	1.99
55913944--55914124	80	2.3	80	83	9	210	27	27	21	23	1.99
55915131--55915160	12	2.6	11	90	10	51	0	16	3	80	0.85
55921802--55922021	79	2.8	79	80	6	205	26	27	20	24	1.99
55921839--55922021	40	4.6	40	80	8	187	27	27	20	24	1.99
55928117--55928246	47	2.8	47	86	0	170	31	28	18	21	1.97
55935113--55935467	27	13.2	27	81	3	122	30	12	19	37	1.89
55935153--55935653	107	4.7	107	80	7	480	31	11	19	37	1.87
55935154--55935653	27	18.6	27	75	10	237	31	11	19	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55935153--55935653	134	3.7	136	80	5	565	31	11	19	37	1.87
55935958--55936042	27	3.0	28	89	5	127	25	31	16	25	1.96
55935958--55936058	28	3.6	28	86	4	114	26	35	14	22	1.93
55938395--55938524	47	2.8	46	81	4	145	33	26	14	25	1.95
55940638--55940686	21	2.3	22	89	3	73	34	16	10	38	1.82
55941969--55942020	26	2.0	27	84	3	70	25	13	23	38	1.91
55944771--55944876	41	2.6	41	86	1	142	26	17	26	29	1.98
55948624--55948684	16	3.7	16	72	20	54	36	1	0	62	1.05
55948619--55948679	24	2.5	24	80	19	74	34	1	0	63	1.04
55948621--55948686	9	7.7	9	75	17	61	34	1	0	63	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311