Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  12  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3422423--3422461
20
1.9
19
85
10
51
10
2
12
74
1.17
3422767--3422824
18
2.9
21
77
17
61
46
0
1
51
1.11
3426083--3426128
16
2.9
16
90
0
56
43
6
13
36
1.69
3433102--3433143
3
13.7
3
85
5
57
2
2
28
66
1.16
3433102--3433143
22
1.9
22
90
0
66
2
2
28
66
1.16
3433105--3433143
19
2.1
19
90
0
60
2
2
28
66
1.18
3435831--3435874
17
2.6
16
80
19
54
25
27
4
43
1.74
3440162--3440236
38
2.0
38
86
0
105
33
8
22
36
1.84
3441659--3441701
19
2.3
19
91
0
68
41
4
11
41
1.62
3441650--3441704
19
2.8
20
80
8
67
41
5
12
40
1.66
3443419--3443507
45
2.0
45
86
4
126
40
11
19
29
1.86
3443468--3443622
31
5.0
31
79
1
177
40
16
15
28
1.89
3443467--3443622
62
2.5
62
86
2
215
40
16
15
28
1.88
3459312--3459367
25
2.2
25
87
6
78
60
0
5
33
1.19
3462501--3462540
20
2.0
20
90
0
62
50
12
10
27
1.72
3462489--3462554
35
1.9
34
90
6
107
46
13
7
31
1.71
3464366--3464408
14
3.0
14
89
3
59
81
2
0
16
0.79
3464366--3464408
22
1.9
23
90
4
70
81
2
0
16
0.79
3464374--3464408
15
2.4
14
90
4
52
82
2
0
14
0.77
3465013--3465059
18
2.6
19
80
10
53
36
4
2
57
1.30
3469591--3469625
14
2.4
14
85
4
52
68
0
0
31
0.90
3469639--3469677
19
1.9
19
85
10
51
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3481715--3481759
18
2.5
18
82
7
56
24
2
0
73
0.95
3481716--3481774
30
2.0
30
86
6
84
23
3
0
72
0.99
3484038--3484082
4
10.8
4
82
17
56
73
4
2
20
1.11
3484035--3484086
26
2.0
26
100
0
104
69
7
3
19
1.29
3484696--3484736
11
3.7
11
80
0
55
19
14
9
56
1.66
3484765--3484795
12
2.7
11
95
5
53
25
0
0
74
0.82
3486184--3486275
23
4.0
23
80
5
105
15
14
27
43
1.85
3486190--3486307
23
5.0
23
77
11
80
15
16
23
44
1.85
3486266--3486334
25
2.8
25
93
0
111
17
17
15
49
1.80
3486366--3486422
23
2.5
23
91
0
87
28
5
24
42
1.76
3491940--3492050
23
4.7
23
73
8
91
15
18
24
42
1.88
3492016--3492080
25
2.6
25
90
0
94
16
18
18
46
1.85
3496825--3496899
37
2.0
38
87
7
109
57
8
18
16
1.63
3500001--3500047
15
3.0
15
84
6
58
65
4
2
27
1.22
3500182--3500246
29
2.3
28
83
2
85
64
4
0
30
1.14
3500204--3500248
18
2.5
18
77
0
54
64
2
0
33
1.06
3501461--3501546
39
2.2
39
89
4
129
19
4
51
24
1.66
3501500--3501786
63
4.5
62
79
7
270
20
5
54
19
1.65
3501513--3501855
21
15.8
21
70
10
170
20
6
54
18
1.65
3501500--3501857
42
8.2
42
81
6
265
20
5
54
19
1.65
3501605--3501812
45
4.7
45
89
2
289
19
6
54
19
1.66
3501605--3501857
45
5.7
44
85
7
257
19
6
54
20
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3501500--3501857
90
4.1
87
76
10
322
20
5
54
19
1.65
3507568--3507649
42
2.0
42
82
4
103
15
26
28
29
1.96
3510159--3510228
25
2.8
25
93
0
113
24
24
21
30
1.99
3513161--3513387
50
4.5
50
90
2
348
35
14
22
26
1.94
3513367--3513425
31
1.9
31
100
0
118
28
20
25
25
1.99
3513380--3513471
46
2.0
46
89
0
139
26
22
23
27
2.00
3515315--3515362
21
2.3
21
89
7
71
12
37
31
18
1.88
3516532--3516585
12
4.8
12
69
17
53
53
1
12
31
1.50
3516939--3516981
21
2.0
22
90
9
70
62
4
2
30
1.28
3518156--3518213
29
2.0
29
83
6
73
6
3
41
48
1.47
3531818--3531843
13
2.0
13
100
0
52
0
15
0
84
0.62
3540510--3540551
17
2.4
18
80
15
52
33
2
0
64
1.07
3549933--3550116
46
4.0
46
92
0
305
20
22
15
41
1.89
3552246--3552286
17
2.4
18
88
8
59
7
17
0
75
1.02
3555786--3555834
25
2.0
25
100
0
98
46
12
12
28
1.77
3556495--3557288
44
18.2
44
84
5
936
31
15
26
27
1.95
3557009--3557231
81
2.7
81
82
10
263
35
14
24
25
1.93
3559051--3559105
21
2.6
21
77
13
58
32
5
0
61
1.19
3566594--3566652
29
2.0
29
80
6
66
72
6
11
8
1.26
3571318--3571372
27
2.0
27
96
0
101
18
14
23
43
1.87
3578195--3578251
29
1.9
30
82
10
73
52
12
5
29
1.60
3582912--3582968
28
2.0
28
100
0
114
52
7
14
26
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3584838--3584895
26
2.3
25
85
5
73
31
5
5
58
1.42
3584852--3584913
26
2.3
27
75
13
65
29
8
6
56
1.53
3586240--3586294
29
2.0
28
82
13
69
60
7
1
30
1.35
3587259--3587318
7
8.3
7
75
12
50
65
1
1
31
1.13
3587423--3587741
3
102.7
3
66
16
79
60
5
2
31
1.33
3587337--3587820
146
3.4
139
86
9
658
60
5
3
30
1.35
3587337--3587884
143
3.8
136
83
9
609
60
5
3
31
1.36
3587790--3587867
25
3.2
25
70
13
65
57
6
2
33
1.38
3587790--3587885
23
4.3
23
71
17
60
58
5
3
33
1.36
3587861--3587907
3
16.0
3
82
4
60
68
0
2
29
1.02
3589471--3589535
30
2.2
30
88
0
94
58
13
3
24
1.50
3590241--3590286
14
3.2
14
77
17
58
21
2
2
73
1.04
3591160--3591184
10
2.5
10
100
0
50
24
0
0
76
0.80
3594370--3594422
24
2.2
24
80
9
65
37
1
7
52
1.41
3596875--3596918
20
2.3
19
84
4
52
15
2
6
75
1.12
3598464--3598513
21
2.3
23
80
16
61
38
16
16
30
1.90
3598892--3598916
2
12.5
2
100
0
50
48
0
0
52
1.00
3599592--3599632
11
3.9
11
78
12
50
53
0
0
46
1.00
3599591--3599632
20
2.0
21
86
4
59
52
0
0
47
1.00
3601543--3601588
24
1.9
24
100
0
92
47
8
8
34
1.65
3603549--3603605
24
2.4
25
82
11
66
42
3
5
49
1.42
3636288--3636416
61
2.1
60
83
8
163
27
28
22
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3640358--3640397
16
2.6
16
92
4
64
55
5
20
20
1.62
3643051--3643174
42
2.9
42
77
4
124
28
24
16
31
1.96
3644262--3644415
10
15.2
10
69
14
75
60
0
3
35
1.18
3644250--3644415
40
4.1
38
74
13
138
60
1
3
34
1.20
3644263--3644451
60
3.1
60
77
9
145
59
1
5
33
1.27
3644923--3644953
16
1.9
16
93
0
53
22
6
3
67
1.28
3645038--3645075
16
2.4
17
82
13
53
23
0
5
71
1.07
3645077--3645162
21
4.2
21
76
5
86
34
3
1
60
1.21
3645080--3645162
30
2.7
31
81
9
107
33
3
1
61
1.21
3647073--3647121
21
2.3
21
89
0
71
24
16
12
46
1.81
3648989--3649091
36
2.9
36
77
0
98
23
32
16
28
1.96
3650923--3650993
30
2.3
33
80
11
87
64
0
1
33
1.02
3650926--3651119
10
19.9
10
66
18
72
60
1
5
32
1.27
3650923--3651012
31
2.9
32
77
12
89
62
0
2
35
1.08
3650924--3651119
9
20.2
9
67
20
69
60
1
5
33
1.27
3650955--3651030
19
3.9
19
75
11
73
63
1
2
32
1.17
3650964--3651008
22
2.0
22
95
0
81
57
0
4
37
1.19
3650924--3651030
50
2.2
50
81
8
130
63
0
1
33
1.11
3651297--3651355
9
6.2
9
81
11
64
30
5
0
64
1.15
3651301--3651376
20
3.8
19
81
6
80
31
5
0
63
1.17
3651353--3651426
30
2.5
30
78
6
71
33
5
1
59
1.29
3651353--3651416
30
2.1
30
82
5
76
32
4
1
60
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3656397--3656437
19
2.2
18
86
4
55
34
17
0
48
1.47
3657007--3657052
16
2.7
18
80
13
60
50
8
0
41
1.33
3662266--3662312
21
2.2
22
92
3
78
21
38
19
21
1.94
3667788--3667814
3
9.0
3
100
0
54
66
0
33
0
0.92
3676713--3676737
10
2.5
10
100
0
50
40
8
0
52
1.31
3677834--3677863
14
2.2
14
94
5
53
33
0
3
63
1.11
3679571--3679616
22
2.1
22
84
8
58
43
4
0
52
1.21
3679968--3679994
3
9.0
3
100
0
54
33
0
0
66
0.92
3680971--3681022
24
2.1
25
86
10
72
53
0
1
44
1.11
3685207--3685250
15
3.1
15
81
18
51
54
4
34
6
1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311