genome.fa.s12.2.7.7.80.10.50.1000.291.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  291  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94661816--94661903	21	4.2	21	82	1	97	18	18	15	47	1.83
94662128--94662200	31	2.4	30	90	6	103	35	5	20	38	1.76
94662137--94662200	31	2.1	31	96	0	119	34	6	21	37	1.79
94666053--94666489	237	1.8	237	86	2	628	34	17	20	28	1.95
94667523--94667796	46	6.0	46	93	0	415	22	24	14	38	1.92
94670833--94670895	22	2.9	22	72	9	65	63	4	9	22	1.43
94671174--94671669	163	3.0	163	99	0	967	33	12	10	43	1.77
94671961--94672009	17	2.8	17	79	11	55	51	2	0	46	1.12
94672868--94672910	20	2.2	20	83	8	52	60	2	0	37	1.10
94676668--94676702	12	3.0	12	95	4	63	34	0	0	65	0.93
94676826--94676885	30	2.0	30	96	0	111	56	11	3	28	1.51
94680936--94680996	19	3.1	19	81	9	70	49	0	0	50	1.00
94691251--94691528	137	2.0	137	97	0	520	36	17	10	35	1.85
94696318--94696356	19	2.2	19	90	9	64	76	0	23	0	0.78
94697339--94697373	18	1.9	18	88	0	52	25	20	8	45	1.79
94697496--94697530	18	1.9	18	88	0	52	40	11	11	37	1.77
94697516--94697562	18	2.6	18	83	6	60	38	14	17	29	1.89
94699177--94699347	30	5.8	29	73	10	114	19	26	12	41	1.87
94699277--94699347	29	2.4	29	95	2	124	14	28	14	43	1.83
94701034--94701102	30	2.3	31	85	7	88	47	20	8	23	1.77
94703056--94703112	3	19.0	3	90	0	78	3	31	3	61	1.30
94703174--94703216	21	2.1	20	86	4	59	30	27	13	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94703248--94703316	30	2.3	31	82	7	79	23	10	18	47	1.79
94705235--94705307	35	2.1	35	97	0	137	42	5	4	47	1.45
94705452--94705501	20	2.4	21	83	12	68	28	12	10	50	1.71
94710871--94710897	13	2.1	13	100	0	54	85	0	14	0	0.61
94732062--94732102	20	1.9	23	85	14	61	51	12	12	24	1.73
94732562--94732622	31	2.0	31	96	0	113	39	16	11	32	1.84
94732711--94732768	30	1.9	30	89	6	91	51	8	1	37	1.43
94741017--94741047	11	2.8	11	90	0	53	32	0	0	67	0.91
94744656--94744695	20	2.0	20	85	9	55	2	17	25	55	1.55
94747058--94747097	20	2.0	20	85	0	53	27	12	35	25	1.92
94750812--94751584	384	2.0	384	99	0	1528	30	16	23	30	1.96
94755012--94755052	21	2.0	21	90	0	64	19	29	21	29	1.98
94759609--94759755	19	7.6	20	74	17	105	58	4	0	36	1.22
94759656--94759718	30	2.0	33	84	9	87	61	4	0	33	1.17
94759612--94759769	30	5.6	28	73	15	80	59	3	1	35	1.24
94772573--94772621	25	2.0	25	84	8	64	32	10	4	53	1.54
94773768--94773877	9	11.7	9	68	16	53	36	1	2	59	1.23
94773768--94773833	29	2.3	28	86	5	87	34	1	4	59	1.27
94773791--94773857	20	3.3	20	79	10	66	38	0	2	58	1.14
94773768--94773859	29	3.2	29	77	11	82	38	1	3	57	1.22
94773772--94773890	20	6.4	17	71	20	55	34	1	3	60	1.23
94773932--94773992	27	2.3	27	88	8	90	22	1	1	73	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94773938--94773979	19	2.2	19	84	16	52	23	0	2	73	0.94
94779626--94779658	16	2.0	17	88	5	50	24	6	0	69	1.10
94787447--94787488	2	21.0	2	90	0	66	45	4	50	0	1.23
94792087--94792119	14	2.4	14	85	5	50	0	12	0	87	0.53
94794581--94794718	69	2.0	69	87	5	199	41	20	15	22	1.90
94815202--94815282	39	2.1	38	84	6	101	62	6	2	28	1.32
94824183--94824240	29	2.0	29	89	0	89	37	22	17	22	1.93
94828913--94829087	46	3.8	46	90	0	269	18	24	14	42	1.87
94828903--94829101	92	2.2	92	87	0	292	19	24	14	42	1.87
94829089--94829192	45	2.3	45	80	6	138	20	24	18	37	1.94
94829216--94829356	33	4.3	33	70	13	101	23	24	19	31	1.98
94830919--94830948	11	2.8	11	95	5	53	76	0	0	23	0.78
94832954--94833033	42	1.9	42	87	5	117	26	36	20	17	1.94
94850292--94850367	25	3.3	25	61	21	65	35	21	17	26	1.95
94856545--94856577	16	2.1	16	88	5	50	69	0	0	30	0.88
94857571--94857596	11	2.4	11	100	0	52	30	34	0	34	1.58
94863136--94863160	12	2.1	12	100	0	50	56	0	0	44	0.99
94864133--94864193	20	3.2	20	73	13	56	57	4	0	37	1.20
94864133--94864199	19	3.6	18	76	7	62	53	4	0	41	1.21
94864208--94864245	17	2.2	18	86	13	53	68	2	0	28	1.03
94865542--94865610	26	2.8	25	74	19	63	49	1	1	47	1.19
94865592--94865649	25	2.4	25	76	23	61	41	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94866375--94866423	19	2.6	19	76	0	53	65	2	4	28	1.22
94871221--94871275	21	2.6	22	71	8	60	47	0	7	45	1.30
94874440--94874533	30	3.1	30	92	1	143	26	24	6	42	1.78
94874450--94874527	15	5.2	15	71	11	70	26	21	7	43	1.80
94878567--94878614	17	2.9	17	80	17	57	35	0	0	64	0.94
94882969--94883015	19	2.5	19	100	0	94	42	21	4	31	1.72
94883401--94883455	26	2.2	26	96	3	103	30	7	27	34	1.84
94884853--94884885	12	2.8	12	100	0	66	48	6	9	36	1.60
94885510--94885542	15	2.1	16	88	11	50	24	0	0	75	0.80
94892097--94892139	14	3.1	14	79	0	50	32	2	0	65	1.06
94902409--94902449	20	2.0	21	90	4	66	26	4	17	51	1.65
94902415--94902455	21	2.0	20	85	4	55	29	2	17	51	1.58
94910237--94910263	12	2.2	12	100	0	54	18	7	40	33	1.78
94916584--94916620	4	9.2	4	100	0	74	48	24	0	27	1.51
94925201--94925251	20	2.5	21	81	6	61	35	1	5	56	1.35
94925582--94925624	23	1.9	22	90	4	68	34	0	2	62	1.08
94925764--94925936	84	2.0	85	87	1	249	30	13	10	45	1.77
94935128--94935181	26	2.2	25	78	18	60	44	1	5	48	1.37
94935357--94935396	20	2.0	20	90	0	62	37	2	17	42	1.63
94936943--94937002	3	20.0	3	100	0	120	33	33	0	33	1.58
94940668--94940728	29	2.1	29	96	0	113	59	6	4	29	1.44
94946235--94946297	27	2.3	27	83	0	72	23	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94949761--94949789	14	2.0	15	93	6	51	20	6	17	55	1.65
94949905--94950033	50	2.5	51	90	5	199	35	16	22	25	1.94
94950009--94950157	31	4.8	31	89	3	228	26	18	27	26	1.98
94950182--94950346	47	3.7	46	84	6	169	28	15	26	29	1.96
94950276--94950390	42	2.7	43	89	4	171	30	14	26	27	1.95
94952535--94952598	22	2.9	22	77	13	60	62	4	0	32	1.16
94952572--94952603	16	2.1	16	94	5	57	56	6	0	37	1.25
94952652--94953102	114	3.9	114	92	3	714	50	16	1	31	1.52
94952652--94953100	227	2.0	229	90	4	721	51	16	1	31	1.52
94952883--94953175	114	2.8	99	75	18	288	50	15	1	32	1.51
94960067--94960181	57	2.0	57	94	0	203	47	6	20	25	1.74
94960357--94960410	20	2.6	21	82	11	67	35	0	7	57	1.27
94963426--94963456	13	2.4	13	94	0	53	38	3	0	58	1.15
94964625--94964880	130	2.0	132	82	4	322	28	18	18	34	1.95
94966153--94966199	21	2.2	21	96	0	85	36	10	25	27	1.89
94966174--94966354	46	3.9	46	85	4	222	39	14	22	23	1.91
94969379--94969545	46	3.5	46	75	12	156	28	28	16	25	1.97
94970609--94970715	21	5.0	22	86	7	132	36	26	23	14	1.92
94970906--94971000	28	3.6	24	81	13	93	46	33	4	15	1.66
94970920--94971003	28	3.0	28	91	1	132	46	30	3	19	1.66
94984657--94984706	23	2.2	23	85	7	66	66	6	0	28	1.15
94991416--94991457	21	2.0	21	95	0	75	38	16	21	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94991655--94991706	27	1.9	27	88	0	77	15	19	48	17	1.82
94991764--94991823	15	3.9	15	74	22	54	65	0	33	1	1.03
94991784--94991826	20	2.2	20	87	8	61	69	0	30	0	0.88
94992095--94992144	26	2.0	24	88	7	73	64	6	0	30	1.18
94992115--94992173	21	2.8	21	78	12	59	69	8	0	22	1.15
94993173--94993262	44	2.0	44	95	0	162	36	10	25	27	1.88
94997273--94997311	17	2.3	17	91	8	62	33	10	10	46	1.72
95000005--95000029	13	1.9	13	100	0	50	32	4	0	64	1.12
95000107--95000164	23	2.5	23	77	8	64	31	6	3	58	1.41
94999997--95000730	139	5.3	138	91	2	1154	27	7	6	58	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311