genome.fa.s12.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  149  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50741207--50741490	150	1.9	150	84	7	380	27	18	25	28	1.98
50745024--50745062	19	2.1	19	100	0	78	53	15	5	25	1.62
50751659--50751842	27	6.8	27	85	0	197	30	21	8	39	1.82
50751659--50751907	54	4.6	54	83	1	230	34	21	7	36	1.82
50751821--50752151	27	12.2	27	77	9	230	41	21	7	29	1.81
50751659--50751853	81	2.4	81	82	0	255	31	21	7	38	1.82
50751835--50752145	54	5.7	53	80	6	268	42	19	7	29	1.79
50752184--50752274	27	3.4	27	80	3	94	36	17	24	21	1.95
50752147--50752270	54	2.3	52	80	12	135	35	19	21	23	1.96
50753074--50753248	26	6.8	26	89	0	255	28	21	22	28	1.99
50753074--50753248	52	3.4	52	92	1	282	28	21	22	28	1.99
50753467--50753571	31	3.4	31	95	0	183	26	17	26	29	1.97
50755886--50756037	27	5.6	27	84	3	189	30	18	7	42	1.79
50755887--50756063	54	3.3	54	88	3	239	32	18	7	41	1.79
50756015--50756262	27	9.2	27	77	9	195	40	22	8	29	1.83
50755853--50756063	81	2.6	81	76	5	219	32	20	8	38	1.83
50755961--50756264	54	5.6	54	78	6	199	37	21	8	31	1.84
50756029--50756262	54	4.4	53	83	4	220	41	21	8	28	1.82
50756029--50756233	80	2.5	80	83	5	243	41	21	8	28	1.83
50756029--50756262	81	2.9	78	78	12	242	41	21	8	28	1.82
50756244--50756321	27	2.8	28	73	11	70	42	14	11	32	1.81
50756378--50756437	27	2.2	27	93	0	102	35	20	28	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50756386--50756469	27	3.1	27	89	3	116	32	21	25	21	1.98
50757204--50757234	16	1.9	16	93	0	53	29	19	16	35	1.93
50757268--50757442	26	6.8	26	91	0	273	26	22	22	28	1.99
50757661--50757769	31	3.5	31	93	0	182	26	14	26	32	1.95
50758641--50758748	43	2.5	42	80	7	121	33	34	17	14	1.91
50758651--50758748	42	2.3	43	80	5	119	32	35	17	14	1.90
50763143--50764430	659	2.0	660	95	1	2350	32	24	13	29	1.94
50773150--50773227	29	2.7	28	84	11	104	25	15	30	28	1.96
50773180--50773506	173	1.9	174	92	0	557	30	14	24	31	1.94
50779807--50779837	16	1.9	16	93	0	53	45	6	19	29	1.75
50786126--50786298	46	3.7	46	76	14	194	21	19	27	31	1.97
50786123--50786293	93	1.8	93	93	2	299	21	19	28	30	1.97
50786522--50786559	19	2.0	20	85	15	53	36	0	23	39	1.55
50788079--50788222	44	3.3	43	82	10	170	27	18	22	31	1.97
50788079--50788222	42	3.3	43	79	12	154	27	18	22	31	1.97
50792391--50792528	43	3.2	43	78	11	131	25	19	24	30	1.98
50792413--50792539	43	3.0	43	79	12	145	25	20	23	29	1.99
50792389--50792546	42	3.7	43	77	8	135	25	20	24	29	1.99
50809819--50809961	39	3.7	39	84	3	130	28	29	20	20	1.98
50809814--50809977	78	2.1	78	80	5	181	28	28	20	21	1.98
50809862--50809977	39	3.0	39	92	0	187	28	29	19	22	1.98
50817908--50818046	57	2.4	58	81	3	165	29	15	23	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50819730--50819827	44	2.2	43	82	7	108	21	17	27	33	1.96
50828547--50828770	40	5.6	40	87	3	306	24	23	26	25	2.00
50828551--50828770	83	2.7	80	89	4	309	23	24	26	25	2.00
50840173--50840362	40	4.8	40	90	1	247	25	22	28	24	1.99
50840173--50840382	80	2.6	80	86	3	280	24	21	28	25	1.99
50848654--50848883	40	5.8	40	92	1	336	25	21	28	24	1.99
50850333--50850556	40	5.6	40	89	3	306	23	22	27	26	2.00
50850337--50850556	83	2.7	80	88	4	309	23	22	27	26	1.99
50852115--50852155	19	2.3	19	87	8	59	29	0	17	53	1.44
50852713--50852804	42	2.1	43	80	7	98	27	11	25	35	1.91
50854783--50854905	48	2.6	49	85	6	162	32	28	14	24	1.95
50854836--50854961	48	2.6	48	84	2	146	27	28	15	28	1.96
50865410--50865491	41	2.0	41	95	0	146	24	28	18	29	1.98
50882458--50882624	46	3.6	46	76	19	159	31	18	26	23	1.97
50882455--50882580	47	2.7	44	82	13	148	30	18	26	24	1.98
50897717--50897769	27	2.0	27	85	7	72	30	16	18	33	1.94
50899704--50899750	25	1.9	25	82	4	60	31	17	17	34	1.92
50919828--50920135	43	7.2	43	90	0	472	12	22	32	32	1.91
50920296--50920450	29	5.3	28	67	12	98	22	17	28	31	1.96
50920379--50920478	28	3.5	28	71	6	85	21	16	34	29	1.94
50920289--50920457	58	2.9	58	92	0	277	22	17	29	30	1.97
50923437--50923611	46	3.8	46	79	11	196	21	18	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50923434--50923605	93	1.8	93	91	2	283	22	19	28	30	1.98
50928515--50928615	52	1.9	52	97	0	193	25	7	31	34	1.85
50928591--50928712	48	2.6	48	88	5	178	30	17	25	27	1.97
50928591--50928788	94	2.1	94	81	1	236	30	17	27	24	1.97
50939823--50939900	28	2.8	28	90	0	120	29	23	12	34	1.92
50942188--50942266	29	2.7	29	86	5	106	27	32	15	24	1.95
50945273--50945350	29	2.7	29	88	4	113	26	33	15	24	1.95
50955986--50956025	21	2.0	19	90	9	62	30	0	20	50	1.49
50957748--50957817	29	2.4	29	83	6	90	28	25	11	34	1.91
50957886--50957922	19	2.0	18	89	5	56	18	40	16	24	1.90
50957895--50957931	19	1.9	19	88	0	56	16	37	18	27	1.92
50961837--50961992	43	3.6	42	81	4	170	31	23	18	26	1.98
50961848--50962005	86	1.8	85	81	9	196	32	22	17	26	1.96
50963498--50963556	16	3.7	16	82	8	75	49	0	1	49	1.11
50963501--50963571	21	3.7	20	71	19	60	49	1	1	47	1.18
50965401--50965443	19	2.3	19	84	8	52	34	25	23	16	1.95
50965412--50965457	19	2.4	19	89	10	67	36	28	19	15	1.92
50973276--50973349	24	3.1	24	67	18	73	40	13	8	37	1.74
50973255--50973349	47	2.0	47	100	0	190	41	14	8	35	1.77
50973257--50973330	22	3.2	22	68	17	69	41	16	8	33	1.77
50974730--50974830	27	3.6	27	86	4	130	29	21	12	35	1.91
50976652--50976824	43	4.1	42	80	6	197	33	26	13	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50980262--50980301	19	2.1	19	100	0	80	25	5	17	52	1.64
50981951--50982102	27	5.6	27	91	3	232	31	28	13	26	1.94
50981951--50982102	55	2.8	55	92	0	250	31	28	13	26	1.94
50988633--50988722	42	2.2	42	95	2	164	21	30	26	22	1.99
51002849--51003014	43	3.9	43	76	9	140	30	22	16	30	1.96
51006052--51006134	23	3.7	23	78	15	84	21	20	21	36	1.96
51010891--51010919	10	2.9	10	100	0	58	68	0	0	31	0.89
51012088--51012161	29	2.6	29	89	4	105	25	16	32	25	1.96
51016664--51016710	16	2.9	17	87	12	73	51	21	6	21	1.70
51017818--51017868	16	3.2	16	85	0	57	49	15	23	11	1.78
51018079--51018181	29	3.7	27	76	11	100	27	15	32	25	1.96
51018087--51018201	57	2.0	56	83	8	144	25	16	33	24	1.96
51028188--51028230	16	2.7	16	81	0	59	53	11	20	13	1.71
51028446--51028515	29	2.5	28	83	4	86	28	15	28	27	1.96
51028454--51028526	29	2.6	29	82	2	85	26	16	30	27	1.97
51034374--51034564	48	4.0	48	80	2	177	26	25	18	29	1.98
51034422--51034586	48	3.6	46	79	6	149	26	26	18	29	1.98
51034334--51034731	186	2.1	186	79	5	410	27	24	17	30	1.97
51036037--51036171	22	5.8	24	77	8	95	25	21	18	34	1.96
51036072--51036195	22	5.5	22	76	12	99	25	20	17	36	1.95
51036046--51036196	45	3.2	45	78	10	144	25	20	18	35	1.95
51051649--51051714	20	3.4	20	66	29	61	48	24	3	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51053986--51054012	14	1.9	14	100	0	54	70	0	0	29	0.88
51066579--51066632	26	2.1	26	100	0	108	27	18	20	33	1.96
51071416--51071639	40	5.7	39	86	8	276	24	22	27	25	2.00
51071416--51071672	80	3.3	79	83	8	231	25	21	27	24	1.99
51079377--51079598	40	5.7	40	83	10	246	24	22	27	25	2.00
51079377--51079598	76	2.8	79	82	10	267	24	22	27	25	2.00
51079377--51079596	116	1.9	117	84	6	295	24	22	27	25	2.00
51083130--51083177	24	2.0	24	91	0	78	29	20	29	20	1.98
51097003--51097100	44	2.2	44	89	3	153	27	22	17	32	1.96
51097020--51097112	44	2.1	44	80	4	98	29	24	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311