genome.fa.s12.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  190  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65387059--65387098	6	6.7	6	88	0	62	15	5	0	80	0.88
65426211--65426257	25	1.9	24	86	4	67	74	2	17	6	1.12
65427495--65427677	79	2.3	81	84	7	232	24	22	27	25	2.00
65427496--65427679	40	4.6	40	83	9	216	23	22	28	25	2.00
65427548--65427712	79	2.1	79	84	6	210	25	21	27	25	1.99
65439775--65439946	93	1.8	93	94	0	308	27	29	21	21	1.99
65439768--65439943	46	3.8	46	79	12	207	28	28	21	21	1.98
65439817--65439955	47	3.0	46	75	16	144	29	28	19	22	1.98
65446948--65447119	93	1.8	93	93	2	301	27	29	20	21	1.98
65446941--65447116	46	3.8	46	78	14	200	28	29	20	21	1.98
65446949--65447135	46	4.0	44	73	16	139	28	29	20	21	1.98
65449856--65450220	47	7.7	47	72	12	241	24	29	18	27	1.98
65449859--65450174	146	2.2	145	81	7	360	25	29	17	27	1.98
65456943--65457033	28	3.2	28	90	3	139	25	14	32	27	1.94
65458718--65458742	13	1.9	13	100	0	50	40	24	4	32	1.73
65461791--65461878	46	1.9	46	85	0	113	27	29	22	20	1.99
65472905--65472987	30	2.7	31	87	3	125	22	27	18	31	1.97
65473208--65473278	25	2.8	25	78	6	72	30	21	22	25	1.98
65480838--65480920	30	2.7	31	90	3	134	21	26	20	31	1.98
65481116--65481211	25	3.8	24	80	12	88	30	21	20	27	1.98
65481141--65481211	25	2.8	26	85	6	92	29	22	22	25	1.99
65483396--65483429	17	2.1	16	88	5	50	44	11	0	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65488683--65488854	43	4.0	42	75	9	161	29	15	25	30	1.95
65492141--65492230	27	3.2	27	78	7	92	32	23	24	20	1.98
65492336--65492400	28	2.3	28	94	0	112	30	9	27	32	1.88
65499985--65500074	27	3.2	27	81	7	101	32	22	23	22	1.98
65500342--65500396	19	2.8	19	94	2	92	18	36	16	29	1.92
65501980--65502095	43	2.7	43	87	2	171	18	16	31	32	1.94
65501980--65502113	43	3.1	42	83	3	153	20	17	30	31	1.96
65502481--65502534	21	2.6	21	87	0	81	0	48	20	31	1.50
65508020--65508121	16	6.4	16	73	17	95	33	3	17	45	1.67
65508012--65508347	9	37.7	9	66	16	94	36	3	15	44	1.62
65508047--65508266	46	4.6	46	84	6	296	36	3	14	45	1.62
65508046--65508242	97	2.0	97	92	0	322	36	3	13	46	1.60
65508211--65508316	30	3.4	30	76	14	124	37	2	16	43	1.62
65508235--65508347	34	3.5	33	78	14	126	38	1	15	44	1.58
65508211--65508347	64	2.1	64	93	0	229	37	2	16	44	1.59
65508046--65508274	97	2.4	95	86	4	257	36	3	13	45	1.61
65508367--65508400	17	2.0	17	94	0	59	38	2	5	52	1.41
65509377--65509437	30	2.0	30	83	0	77	31	24	4	39	1.77
65514593--65514817	40	5.7	40	86	5	296	24	22	28	25	2.00
65514593--65514850	119	2.2	119	81	6	283	25	21	27	24	1.99
65519484--65519573	38	2.3	39	84	1	119	27	24	25	22	2.00
65526145--65526213	35	2.0	35	100	0	138	30	14	20	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65527404--65527548	40	3.6	40	85	4	193	25	24	26	23	2.00
65528990--65529064	22	3.5	21	70	12	62	26	1	24	48	1.59
65528990--65529156	7	23.4	7	72	10	79	22	0	29	47	1.56
65529082--65529176	50	1.9	50	89	4	147	22	0	35	42	1.54
65529086--65529178	43	2.2	43	84	3	116	22	0	36	40	1.54
65530228--65530643	207	2.0	207	96	0	760	27	17	20	35	1.94
65532451--65532561	27	4.2	25	84	10	123	37	23	23	15	1.93
65532451--65532561	54	2.1	54	86	5	154	37	23	23	15	1.93
65533974--65534044	24	3.0	24	95	0	124	25	38	1	35	1.65
65534116--65534152	17	2.2	17	100	0	74	24	24	16	35	1.95
65540188--65540299	27	4.2	26	83	7	134	37	23	24	15	1.93
65540190--65540296	54	2.0	54	87	3	153	38	21	24	15	1.92
65541543--65541569	13	2.1	13	100	0	54	59	0	25	14	1.36
65541708--65541801	24	3.9	24	83	9	111	24	35	5	35	1.78
65548010--65548117	27	4.0	26	83	8	117	37	20	24	17	1.93
65548012--65548117	54	2.0	54	84	3	142	38	18	24	17	1.93
65549540--65549586	24	2.0	24	91	0	76	25	36	0	38	1.56
65551576--65551852	43	6.5	43	83	2	324	24	16	28	30	1.96
65552641--65552877	118	2.0	118	95	0	429	30	8	22	38	1.85
65554389--65554441	25	2.2	25	86	10	74	30	18	16	33	1.94
65554396--65554466	26	2.8	25	85	6	81	26	21	22	29	1.99
65554599--65554647	25	2.0	25	91	0	80	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65561020--65561097	25	3.1	25	90	3	113	25	20	21	32	1.98
65561230--65561278	25	2.0	25	91	0	80	28	18	20	32	1.96
65561702--65561736	16	2.1	18	89	10	56	17	22	17	42	1.88
65563610--65563654	18	2.5	18	79	13	56	77	15	2	4	1.02
65564914--65564967	28	1.9	28	88	0	81	20	7	1	70	1.21
65568383--65568579	98	2.0	98	100	0	394	32	15	16	35	1.90
65576334--65576509	46	3.8	47	79	12	211	20	20	28	30	1.98
65576331--65576502	93	1.8	93	93	2	301	20	20	29	29	1.98
65581965--65582048	42	2.0	42	100	0	168	28	21	16	33	1.95
65583785--65583810	11	2.4	11	100	0	52	92	7	0	0	0.39
65585109--65585252	46	3.1	45	83	6	182	31	17	28	22	1.97
65585851--65585951	44	2.3	44	81	6	107	33	16	20	28	1.95
65585916--65586226	143	2.2	143	85	0	415	30	18	22	28	1.97
65585959--65586266	143	2.2	143	83	0	391	31	18	21	28	1.97
65588035--65588088	28	1.9	28	88	0	81	20	7	1	70	1.21
65601094--65601127	16	2.1	17	88	5	52	38	5	20	35	1.77
65602162--65602440	151	1.8	151	82	3	355	23	25	28	23	2.00
65602163--65602472	151	2.1	151	80	2	336	23	25	27	23	2.00
65604043--65604085	15	2.9	15	76	13	52	46	0	0	53	1.00
65620563--65620623	30	2.0	30	83	0	77	31	22	8	37	1.84
65621511--65621687	45	4.0	43	80	11	182	24	15	27	32	1.96
65622488--65622757	6	44.3	6	72	15	198	48	13	18	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65622509--65622757	85	2.8	85	90	4	363	48	13	17	20	1.81
65622571--65622757	25	7.6	24	76	12	98	47	14	18	19	1.82
65622876--65622951	27	2.8	28	80	11	79	35	23	22	18	1.96
65623254--65623336	27	3.1	26	84	5	94	38	22	19	19	1.93
65623363--65623393	16	1.9	16	93	0	53	35	16	19	29	1.93
65623535--65623729	27	7.3	27	81	2	214	27	18	18	35	1.95
65625601--65625751	40	3.8	41	86	2	184	22	27	25	24	2.00
65633161--65633277	40	2.9	41	83	3	157	24	27	25	22	2.00
65640191--65640223	16	1.9	18	88	11	52	51	18	12	18	1.76
65640709--65640917	45	4.7	45	88	2	289	27	27	20	23	1.99
65656451--65656510	30	2.0	30	86	0	84	28	25	10	36	1.88
65661208--65661372	46	3.6	46	73	15	142	31	28	17	22	1.97
65661254--65661515	47	5.6	46	70	13	196	30	28	17	22	1.97
65661206--65661515	93	3.3	93	89	1	444	30	28	18	22	1.97
65666602--65666864	47	5.7	45	71	12	183	31	26	18	23	1.97
65666650--65666817	46	3.6	46	76	7	187	31	25	19	23	1.98
65666595--65666865	93	2.9	93	91	1	427	31	26	18	23	1.97
65686400--65686424	13	1.9	13	100	0	50	16	32	40	12	1.84
65695078--65695153	37	2.1	37	94	0	134	31	7	21	39	1.82
65698436--65698542	52	2.1	52	98	0	205	24	13	26	36	1.92
65707181--65707340	43	3.7	42	78	8	153	23	18	26	31	1.97
65707223--65707340	42	2.8	42	79	8	132	23	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65708942--65708973	13	2.5	13	100	0	64	31	31	31	6	1.82
65709555--65709705	43	3.5	43	80	4	162	31	15	20	31	1.94
65712331--65712525	96	2.0	96	92	3	322	29	13	23	33	1.93
65719149--65719375	43	5.4	42	84	5	183	32	27	15	24	1.96
65719141--65719336	43	4.6	42	86	0	203	29	27	18	24	1.98
65719507--65719575	35	2.0	35	82	5	86	56	4	2	36	1.34
65725606--65725631	11	2.4	11	100	0	52	23	0	53	23	1.46
65726530--65726603	7	10.4	7	74	8	60	36	45	0	17	1.49
65726533--65726603	21	3.3	21	77	11	72	38	43	0	18	1.50
65726504--65726603	29	3.5	29	77	10	107	36	46	0	18	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311