genome.fa.s12.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  95  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31551108--31551235	46	2.8	46	95	1	222	29	29	21	19	1.97
31551116--31551254	46	3.0	45	88	5	140	28	29	20	20	1.98
31601251--31601295	22	2.0	22	95	0	81	22	22	24	31	1.99
31605885--31606108	40	5.6	40	82	7	249	24	21	28	25	1.99
31612636--31612860	40	5.6	40	86	3	299	23	22	28	25	1.99
31612640--31612860	83	2.7	80	86	5	286	22	23	28	25	1.99
31615349--31615405	27	2.2	26	83	3	69	19	24	21	35	1.96
31631237--31631301	29	2.2	29	97	0	121	33	9	20	36	1.84
31634079--31634211	23	5.8	23	71	11	87	22	21	19	36	1.95
31634079--31634261	47	4.0	45	78	14	160	22	22	20	34	1.97
31634079--31634211	69	1.9	69	80	11	157	22	21	19	36	1.95
31634079--31634246	22	7.3	23	75	14	143	22	22	18	36	1.95
31634079--31634261	92	2.0	93	83	5	237	22	22	20	34	1.97
31638269--31638340	22	3.1	22	64	24	58	33	13	29	23	1.93
31638248--31638481	94	2.5	94	87	2	292	32	11	29	26	1.91
31638248--31638441	47	4.1	47	94	0	334	34	11	28	26	1.91
31638465--31638619	46	3.4	46	97	0	292	34	10	32	22	1.88
31642098--31642181	28	3.0	29	82	8	102	30	10	27	30	1.90
31645735--31645759	9	2.8	9	100	0	50	60	0	0	40	0.97
31649418--31649672	55	4.8	54	78	9	242	22	25	16	35	1.95
31653954--31654030	25	3.3	25	62	23	67	33	2	29	33	1.72
31653938--31655398	47	31.1	47	90	7	2312	31	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31654024--31654097	22	3.3	22	64	17	62	29	10	31	28	1.91
31655517--31655594	36	2.1	37	88	2	113	24	17	32	25	1.97
31656805--31657013	40	5.3	39	85	7	271	25	22	27	24	2.00
31660928--31662112	47	25.1	47	95	2	2090	31	8	30	29	1.87
31662231--31662309	37	2.1	37	90	0	122	24	18	31	25	1.98
31668818--31669047	55	4.3	54	80	9	235	22	25	16	36	1.94
31674572--31674619	24	2.0	23	88	4	69	47	16	22	12	1.80
31674833--31674944	29	4.0	27	71	10	89	28	13	32	25	1.94
31677492--31677674	79	2.3	81	83	7	223	25	21	27	25	1.99
31677492--31677674	40	4.6	40	82	9	205	25	21	27	25	1.99
31677543--31677707	79	2.1	79	83	6	201	26	20	27	25	1.99
31685575--31685756	40	4.6	40	81	8	203	25	21	27	25	2.00
31685575--31685756	79	2.3	81	83	7	221	25	21	27	25	2.00
31685628--31685779	79	1.9	79	84	7	202	26	21	26	25	1.99
31687333--31687435	37	2.8	37	93	0	179	25	32	19	23	1.98
31687576--31687865	48	6.0	48	94	0	499	31	27	6	34	1.82
31690802--31690850	26	1.9	26	87	4	73	48	18	14	18	1.80
31695900--31695952	25	2.2	25	82	3	63	32	1	20	45	1.62
31695939--31695968	15	2.0	15	93	0	51	36	0	13	50	1.42
31696256--31696345	25	3.6	25	84	1	117	21	21	20	37	1.94
31696443--31696515	27	2.8	24	76	13	74	23	27	20	28	1.99
31697407--31697438	13	2.5	13	94	0	55	6	25	40	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31701893--31701934	21	2.0	22	85	4	59	19	28	35	16	1.93
31702058--31702139	42	2.0	42	82	4	103	21	36	23	18	1.95
31711817--31711911	29	3.3	29	84	0	127	30	28	14	26	1.95
31718866--31718969	42	2.4	43	79	7	104	34	25	16	23	1.95
31718905--31718998	44	2.1	44	86	3	127	35	23	17	24	1.95
31721145--31721182	19	2.0	20	89	5	60	26	21	15	36	1.93
31722872--31723051	99	1.9	94	81	8	218	25	18	30	26	1.98
31738731--31738899	47	3.6	47	95	0	293	35	13	24	26	1.93
31738878--31739007	55	2.4	53	84	6	172	35	17	26	20	1.95
31738878--31739044	53	3.1	54	81	6	185	37	15	26	20	1.92
31741552--31741581	13	2.3	13	94	0	51	3	33	36	26	1.73
31744816--31744849	18	1.9	18	88	5	52	29	14	14	41	1.86
31745958--31746021	28	2.2	28	75	2	65	29	25	14	31	1.94
31746975--31747098	26	4.8	26	87	3	171	29	23	19	27	1.98
31747144--31747212	18	3.6	19	81	14	81	37	20	7	34	1.80
31747148--31747212	20	3.3	20	83	12	91	36	20	7	35	1.81
31747156--31747190	9	3.9	9	100	0	70	42	22	0	34	1.54
31748866--31748944	37	2.1	37	90	0	122	25	31	18	24	1.98
31749063--31749356	49	6.1	49	90	2	461	28	29	9	32	1.88
31749063--31749356	96	3.0	97	91	3	459	28	29	9	32	1.88
31749063--31749356	145	2.0	145	91	0	480	28	29	9	32	1.88
31761289--31761360	26	2.8	26	95	2	128	30	23	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31761406--31761474	18	3.6	19	81	14	81	37	20	7	34	1.80
31761410--31761474	20	3.3	20	83	12	91	36	20	7	35	1.81
31761418--31761452	9	3.9	9	100	0	70	42	22	0	34	1.54
31761510--31761557	25	1.9	25	86	0	69	27	18	22	31	1.97
31768679--31768793	44	2.7	43	77	11	128	30	25	19	25	1.98
31769781--31771307	760	2.0	760	99	0	3045	34	21	14	29	1.93
31773527--31773577	27	1.9	26	84	4	66	19	27	17	35	1.94
31781084--31781142	27	2.3	25	82	5	64	22	20	20	37	1.95
31783875--31784123	27	9.2	27	88	0	309	30	21	6	40	1.78
31783861--31784150	81	3.6	81	86	1	357	31	21	6	40	1.79
31784102--31784309	27	7.7	27	79	8	165	39	21	8	30	1.82
31784116--31784293	81	2.2	81	87	6	254	41	20	8	29	1.82
31784116--31784293	54	3.3	53	85	1	221	41	20	8	29	1.82
31784312--31784555	27	9.0	27	86	0	308	35	18	20	25	1.95
31784758--31784852	25	3.8	25	82	0	109	26	24	21	28	1.99
31789603--31789671	25	2.8	25	70	16	70	21	23	20	34	1.96
31789652--31789738	24	3.6	24	74	13	79	19	25	20	34	1.96
31789653--31789757	49	2.1	49	84	3	131	21	26	19	32	1.97
31789726--31789814	25	3.6	25	81	6	108	25	26	15	31	1.96
31794421--31794501	9	8.9	9	72	11	51	66	3	3	25	1.25
31794422--31794501	17	4.4	19	75	13	69	67	3	3	25	1.24
31795272--31795296	5	5.0	5	100	0	50	80	20	0	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31795052--31797968	888	3.3	883	88	3	4117	35	9	17	37	1.82
31806114--31806140	12	2.2	12	100	0	54	51	7	0	40	1.30
31806593--31806746	28	5.5	28	91	1	229	27	11	26	33	1.91
31814223--31814248	12	2.2	12	100	0	52	50	7	0	42	1.31
31814695--31814848	28	5.5	28	92	1	238	27	12	26	33	1.92
31819500--31819715	55	4.0	54	78	8	242	33	17	25	23	1.96
31819507--31819709	108	1.9	110	87	6	306	32	18	25	24	1.97
31822020--31822062	22	2.0	22	90	9	70	37	0	25	37	1.56
31829402--31829487	27	3.0	28	86	10	129	26	13	34	24	1.93
31829399--31829493	31	3.2	31	86	10	153	27	12	34	25	1.92
31829457--31829703	47	5.2	49	87	4	339	31	10	30	27	1.89
31829822--31829900	37	2.1	37	88	4	115	25	18	30	25	1.98
31831759--31831904	43	3.4	43	98	0	283	22	15	34	26	1.94
31831886--31831959	29	2.6	29	84	4	96	25	16	31	27	1.96
31832268--31832502	40	5.9	40	89	1	328	24	22	27	25	2.00
31833599--31833697	49	2.0	49	100	0	198	43	6	16	34	1.72
31834804--31834857	27	2.0	27	96	0	99	27	14	35	22	1.93
31834757--31834906	76	2.0	76	100	0	300	30	10	31	28	1.90
31834831--31835124	49	6.1	49	89	2	429	31	9	30	27	1.89
31834831--31835124	96	3.1	97	87	4	427	31	9	30	27	1.89
31835247--31835320	37	2.0	37	89	2	114	21	20	31	27	1.98
31841661--31841689	14	2.1	14	100	0	58	51	6	0	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31841891--31841934	22	2.0	22	100	0	88	31	0	22	45	1.53
31851602--31851718	58	2.0	59	93	1	200	35	11	20	32	1.89
31856511--31856536	7	3.7	7	100	0	52	57	0	0	42	0.98
31858086--31858140	8	6.5	8	80	12	65	25	5	0	69	1.10
31858065--31858130	27	2.4	27	92	2	105	28	6	1	63	1.27
31859195--31859263	29	2.3	31	82	7	88	30	15	10	43	1.80
31859208--31859273	31	2.1	31	83	5	80	37	15	6	40	1.72
31859470--31859521	22	2.3	23	81	15	63	46	3	0	50	1.20
31860545--31860614	20	3.5	20	84	0	104	25	35	7	31	1.83
31866566--31866624	25	2.4	24	78	13	66	33	6	1	57	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311