genome.fa.s12.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  107  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35334771--35334935	79	2.1	79	83	6	201	26	21	27	24	1.99
35340494--35340548	19	2.9	19	84	10	60	52	9	0	38	1.33
35355772--35356741	325	3.0	325	94	0	1701	37	17	14	30	1.90
35358536--35358603	35	2.0	34	94	2	118	29	8	30	30	1.88
35360995--35361040	23	2.0	23	82	4	56	45	8	19	26	1.79
35362231--35362443	52	4.1	52	85	1	293	26	11	23	38	1.89
35362232--35362436	103	2.0	104	89	2	315	26	11	23	38	1.89
35362672--35362910	40	5.9	40	73	8	164	27	20	23	28	1.99
35362832--35362916	43	2.0	43	90	0	134	28	17	25	28	1.98
35366419--35366634	105	2.0	105	99	0	423	43	13	10	32	1.79
35369317--35369355	21	1.9	20	85	15	53	12	30	28	28	1.93
35377115--35377176	25	2.4	25	78	2	70	40	3	17	38	1.66
35383513--35383555	21	2.0	21	86	0	59	69	9	2	18	1.26
35384373--35384428	28	2.0	28	100	0	112	35	14	21	28	1.92
35385487--35385523	19	1.9	19	88	0	56	16	10	51	21	1.74
35406340--35406385	23	2.0	23	83	12	58	13	19	26	41	1.88
35410072--35410150	25	3.2	25	71	20	83	25	21	21	31	1.98
35410060--35410175	50	2.3	50	89	0	178	26	22	18	31	1.97
35410107--35410179	25	2.9	25	74	8	67	28	23	16	31	1.96
35410983--35411046	31	2.1	31	90	0	101	25	23	15	35	1.94
35411239--35411358	24	5.0	23	89	5	150	28	22	21	27	1.99
35411253--35411358	24	4.4	24	91	2	160	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35411415--35411471	9	5.9	9	73	15	51	35	21	8	35	1.84
35411403--35411473	20	3.5	20	94	0	124	32	21	11	35	1.89
35411408--35411462	11	5.4	11	70	16	55	30	20	12	36	1.90
35419057--35419120	31	2.1	31	90	0	101	25	23	15	35	1.94
35419311--35419453	24	6.0	24	91	4	202	28	21	21	27	1.99
35419510--35419566	9	5.9	9	73	15	51	35	21	8	35	1.84
35419498--35419568	20	3.5	20	94	0	124	32	21	11	35	1.89
35419503--35419557	11	5.4	11	70	16	55	30	20	12	36	1.90
35419605--35419652	25	1.9	25	86	0	69	25	16	25	33	1.96
35425458--35425673	75	2.9	76	86	3	276	47	8	13	30	1.72
35425658--35426220	138	4.1	138	88	3	801	40	8	5	44	1.60
35430917--35431111	48	4.1	48	82	0	210	33	16	23	26	1.95
35430929--35431150	48	4.6	47	81	5	166	33	17	24	24	1.96
35430967--35431146	96	1.9	96	83	2	236	32	17	23	26	1.97
35433582--35433624	19	2.3	19	88	4	61	18	34	34	11	1.87
35436694--35436766	6	11.8	6	71	16	51	47	15	17	19	1.82
35436694--35436766	31	2.4	31	80	0	92	47	15	17	19	1.82
35436907--35437008	27	3.8	26	88	5	132	36	21	23	18	1.95
35437674--35437904	27	8.6	27	86	0	309	24	17	19	38	1.93
35437913--35438452	27	20.0	27	83	3	615	40	9	21	27	1.84
35439977--35440064	43	2.0	43	100	0	176	23	11	22	42	1.86
35440211--35440247	16	2.3	16	100	0	74	21	0	35	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35441057--35441338	48	5.9	48	82	3	289	31	19	23	25	1.98
35441057--35441334	144	1.9	144	81	1	333	31	19	23	26	1.98
35443143--35443214	31	2.3	31	95	0	126	20	36	29	13	1.92
35445436--35446136	138	5.1	138	90	2	1093	39	7	5	46	1.58
35445768--35445981	72	3.1	70	63	24	162	42	9	4	43	1.57
35445773--35445998	67	3.3	67	66	20	171	42	9	4	44	1.56
35445436--35446136	278	2.5	276	91	1	1127	39	7	5	46	1.58
35447208--35447260	20	2.6	21	82	11	65	41	11	9	37	1.73
35453892--35453924	13	2.5	13	100	0	66	30	48	21	0	1.50
35457361--35457621	138	1.9	138	88	1	398	22	21	23	32	1.98
35460601--35460751	27	5.6	27	92	4	160	31	29	13	26	1.94
35460601--35460751	54	2.8	55	92	2	250	31	29	13	26	1.94
35468642--35468793	27	5.6	27	93	3	241	30	28	13	26	1.94
35468642--35468793	55	2.8	55	94	0	259	30	28	13	26	1.94
35479431--35479471	15	2.8	15	85	10	50	43	2	2	51	1.28
35494336--35494374	20	2.0	20	89	0	60	43	17	10	28	1.82
35498019--35498133	44	2.6	44	85	6	146	28	24	20	26	1.99
35499870--35499925	6	9.3	6	84	0	76	55	16	0	28	1.41
35499870--35499925	18	3.1	18	89	0	85	55	16	0	28	1.41
35501972--35502245	47	5.9	48	76	8	219	23	29	18	28	1.98
35503662--35503688	4	6.8	4	100	0	54	51	0	0	48	1.00
35503665--35503720	15	3.9	13	78	21	51	44	5	5	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35503662--35503720	21	3.2	19	86	11	70	45	5	5	44	1.47
35504499--35504560	21	3.0	19	75	13	61	38	19	17	24	1.93
35506443--35506601	83	1.9	83	90	0	255	33	27	10	28	1.90
35507220--35507259	21	2.0	20	85	5	53	50	17	0	32	1.47
35518808--35518859	21	2.5	22	84	6	63	46	7	1	44	1.43
35519480--35519564	36	2.3	36	84	8	109	25	1	17	55	1.49
35519478--35519666	9	20.4	9	69	18	86	23	1	19	56	1.51
35519478--35519666	13	13.6	14	68	21	71	23	1	19	56	1.51
35523029--35523360	54	6.2	54	80	7	338	39	16	9	33	1.82
35523029--35523373	27	12.9	26	75	8	264	39	17	9	32	1.83
35523775--35523843	27	2.6	27	83	0	84	20	18	17	43	1.88
35524092--35524159	27	2.6	27	76	6	68	22	19	27	30	1.97
35527233--35527523	54	5.4	52	82	5	305	41	18	6	32	1.77
35527233--35527527	27	11.0	26	81	7	270	41	18	6	33	1.77
35527919--35527994	27	2.8	27	81	0	80	21	15	19	43	1.88
35542367--35542428	30	2.1	30	100	0	124	30	9	19	40	1.84
35547872--35547952	40	2.0	40	97	0	153	27	34	8	29	1.87
35552501--35552548	24	2.1	24	85	11	66	22	8	20	47	1.77
35553661--35553740	39	2.1	39	100	0	160	38	12	5	43	1.64
35553925--35553981	8	7.4	8	82	7	73	42	0	0	57	0.98
35554287--35554325	21	1.9	20	84	5	51	30	12	0	56	1.37
35558489--35558556	26	2.7	26	80	11	70	19	22	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35558539--35558593	24	2.2	25	81	12	69	18	21	21	38	1.94
35558525--35558666	74	1.9	73	82	4	178	19	23	21	35	1.96
35558599--35558705	49	2.2	50	85	8	139	15	25	23	35	1.94
35558624--35558706	24	3.4	24	78	9	80	15	26	22	34	1.94
35561513--35561566	23	2.3	24	84	15	69	64	0	3	31	1.11
35562961--35563021	15	4.1	15	80	4	70	18	29	22	29	1.97
35563152--35563192	18	2.3	18	88	12	59	34	19	19	26	1.96
35563152--35563228	36	2.2	36	81	6	86	33	22	16	27	1.95
35563569--35563628	31	1.9	31	90	6	95	23	13	36	26	1.92
35571037--35571072	18	2.0	18	94	0	63	25	16	16	41	1.89
35577489--35577618	47	2.8	46	78	12	138	26	16	31	25	1.96
35585324--35585377	27	2.0	27	96	0	99	24	18	24	33	1.97
35601891--35601996	57	1.9	56	83	7	137	40	0	33	25	1.56
35602478--35602510	12	2.6	13	95	4	59	9	0	15	75	1.03
35604129--35604204	24	3.1	23	83	5	89	21	23	19	35	1.96
35607647--35607840	29	6.7	29	86	3	248	41	12	25	20	1.88
35607659--35607828	88	1.9	88	90	2	270	40	11	27	20	1.87
35610263--35610417	42	3.7	42	79	3	168	30	15	24	29	1.96
35619427--35619462	18	2.0	18	100	0	72	27	33	22	16	1.95
35631234--35631282	20	2.5	20	87	12	66	57	8	0	34	1.29
35633795--35633842	23	2.1	23	100	0	96	22	4	16	56	1.58
35638985--35639021	9	3.9	10	86	10	51	72	0	2	24	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35639049--35639117	3	22.7	3	76	8	50	59	4	5	30	1.40
35642794--35642856	31	2.0	32	84	9	85	58	4	6	30	1.43
35642849--35642893	21	2.1	21	83	4	54	26	0	6	66	1.16
35644107--35644153	24	2.0	24	95	0	85	25	44	4	25	1.72
35644237--35644289	24	2.1	26	86	6	74	58	9	18	13	1.61
35644668--35644966	3	101.0	3	67	20	62	25	8	3	62	1.39
35644665--35644736	20	3.5	20	76	14	74	26	5	0	68	1.12
35644810--35644905	24	3.8	25	71	23	76	21	11	1	65	1.31
35650993--35651064	25	2.9	25	87	0	90	43	23	20	12	1.86
35652855--35652902	24	2.0	25	87	4	71	37	16	22	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311