Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  98  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32420248--32420304
30
2.0
28
86
6
78
52
3
29
14
1.58
32422285--32422344
29
2.1
29
90
0
93
41
28
0
30
1.56
32422291--32422338
15
3.3
15
73
5
53
43
25
0
31
1.55
32422960--32423004
14
3.2
14
87
0
54
17
33
6
42
1.76
32423862--32423907
20
2.3
20
92
0
74
32
19
26
21
1.97
32425269--32425308
20
2.0
21
90
5
64
32
25
22
20
1.98
32432725--32432755
10
3.0
10
95
4
53
9
3
9
77
1.10
32432697--32432743
12
3.8
12
94
2
76
14
6
2
76
1.08
32434521--32434560
18
2.3
17
86
4
53
7
25
2
65
1.32
32436792--32436836
12
3.8
12
81
0
54
8
24
0
66
1.20
32436843--32436873
12
2.7
12
95
5
55
25
12
12
48
1.77
32436921--32436977
5
11.0
5
78
17
55
1
17
1
78
0.91
32436921--32436982
16
4.0
14
78
15
61
1
16
3
79
0.95
32439424--32439472
20
2.4
21
86
3
64
30
22
26
20
1.98
32440010--32440405
197
2.0
197
100
0
792
31
11
23
33
1.91
32441353--32441380
4
7.0
4
100
0
56
75
0
0
25
0.81
32449037--32449079
16
2.9
14
80
16
50
76
2
16
4
1.05
32449024--32449079
15
3.7
15
77
17
62
76
1
16
5
1.05
32449148--32449172
12
2.1
12
100
0
50
76
0
16
8
1.02
32449142--32449197
18
3.1
18
76
5
51
69
3
19
7
1.27
32449148--32449229
30
2.7
31
81
5
105
64
1
21
12
1.33
32451406--32451503
30
3.3
30
72
4
90
27
26
16
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32453002--32453050
20
2.4
21
86
3
64
30
22
26
20
1.98
32453658--32453714
29
2.0
29
92
0
96
24
0
29
45
1.53
32456748--32456844
30
3.2
30
76
2
106
27
15
28
27
1.96
32459616--32459662
20
2.3
20
81
0
58
29
34
12
23
1.92
32461179--32461215
12
3.2
12
96
3
67
78
8
0
13
0.96
32461179--32461215
11
3.3
11
92
3
56
78
8
0
13
0.96
32464099--32464145
20
2.3
20
81
0
58
29
34
12
23
1.92
32465927--32466116
70
2.7
68
82
4
236
43
17
11
26
1.84
32470409--32470465
29
2.0
29
92
0
96
45
29
0
24
1.53
32471609--32471642
12
2.8
12
81
0
50
17
38
0
44
1.49
32473091--32473138
20
2.4
20
67
0
51
20
27
18
33
1.96
32476122--32476165
21
2.0
22
86
4
63
34
34
6
25
1.82
32485471--32485514
21
2.0
22
86
4
63
34
34
6
25
1.82
32490614--32490711
30
3.3
30
69
9
74
29
25
14
30
1.95
32493374--32493461
18
4.8
18
68
15
54
9
25
1
64
1.29
32496761--32496808
20
2.4
20
67
0
51
33
18
27
20
1.96
32499076--32499144
13
5.4
13
86
6
88
72
7
4
15
1.23
32500061--32500117
11
5.5
10
73
22
55
77
1
17
3
1.00
32500061--32500117
5
11.0
5
77
17
55
77
1
17
3
1.00
32500061--32500117
16
3.7
14
80
17
60
77
1
17
3
1.00
32500165--32500195
12
2.6
12
100
0
62
45
12
16
25
1.83
32500198--32500268
30
2.4
31
81
11
85
63
1
21
14
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32500734--32500781
14
3.4
14
82
0
51
41
6
33
18
1.76
32503572--32503615
21
2.0
22
86
4
63
34
34
6
25
1.82
32505728--32505773
18
2.5
19
75
13
51
58
6
0
34
1.24
32505987--32506021
10
3.5
10
88
0
52
37
22
25
14
1.92
32507318--32507405
30
2.9
30
71
6
97
27
27
17
28
1.97
32509290--32509328
18
2.1
19
85
4
53
7
23
2
66
1.30
32509321--32509400
24
3.4
22
74
10
70
12
25
0
62
1.30
32511894--32511941
20
2.4
20
71
0
51
33
18
27
20
1.96
32513209--32513305
30
3.2
30
73
2
88
28
26
16
27
1.97
32514924--32514991
13
5.7
11
82
14
66
70
5
4
19
1.25
32514934--32514990
13
4.5
13
86
8
73
71
5
5
17
1.23
32522090--32522157
30
2.3
29
94
2
118
25
17
23
33
1.96
32526412--32526468
12
4.7
11
80
18
53
70
3
8
17
1.28
32526407--32526456
26
1.9
26
87
0
73
66
2
10
22
1.32
32526437--32526474
13
3.1
12
85
14
51
68
7
7
15
1.37
32526795--32526889
29
3.2
29
77
7
95
29
14
27
28
1.95
32527386--32527453
30
2.3
29
94
2
118
25
17
23
33
1.96
32529591--32529617
14
1.9
14
100
0
54
18
0
0
81
0.69
32533373--32533408
8
4.3
9
83
16
51
16
0
0
83
0.65
32533373--32533408
17
2.2
17
90
5
56
16
0
0
83
0.65
32534847--32534877
12
2.6
12
100
0
62
25
16
12
45
1.83
32534938--32534987
6
8.2
6
81
16
50
2
20
2
76
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32534927--32534997
37
1.9
37
86
11
101
2
18
2
76
1.04
32534923--32534983
16
3.8
16
77
14
63
3
19
1
75
1.03
32535930--32535968
12
3.1
13
85
14
55
12
5
7
74
1.20
32535940--32535978
14
2.6
14
84
8
51
10
7
5
76
1.13
32537687--32537783
30
3.2
30
72
8
99
28
16
26
27
1.97
32538612--32538654
21
2.0
21
90
0
68
32
2
37
27
1.70
32541107--32541152
20
2.2
21
88
3
67
15
19
21
43
1.87
32541114--32541161
21
2.3
20
92
3
78
12
16
22
47
1.80
32543573--32543604
15
2.1
15
94
0
55
81
0
15
3
0.82
32543528--32543616
34
2.6
35
76
13
96
73
2
17
6
1.16
32543530--32543611
43
1.9
43
82
9
105
73
2
17
7
1.17
32545220--32545266
22
2.1
22
96
0
85
23
40
4
31
1.74
32547209--32547257
10
4.8
10
80
14
55
40
22
22
14
1.90
32547209--32547257
21
2.4
21
89
3
73
40
22
22
14
1.90
32548090--32548126
18
2.1
18
90
5
58
40
0
10
48
1.38
32551103--32551166
30
2.2
29
83
8
76
14
26
1
57
1.46
32551157--32551197
19
2.1
20
95
4
75
0
24
4
70
1.06
32554038--32554134
30
3.2
30
72
8
99
28
16
26
27
1.97
32555274--32555318
14
3.3
14
78
6
56
35
0
15
48
1.45
32557595--32557654
29
2.1
29
93
0
102
41
30
0
28
1.56
32557601--32557648
15
3.3
15
73
5
53
43
27
0
29
1.55
32560416--32560461
20
2.2
21
84
3
58
13
19
21
45
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32560423--32560470
21
2.3
20
89
3
69
10
14
22
52
1.72
32567972--32568025
27
2.0
27
96
0
99
27
18
24
29
1.98
32568609--32568845
119
2.0
118
91
0
384
29
12
30
27
1.93
32569512--32569555
22
2.0
22
95
0
79
34
4
36
25
1.76
32571953--32571992
14
2.9
14
88
0
53
50
7
32
10
1.64
32573344--32573389
20
2.3
20
84
0
56
23
19
17
39
1.92
32573336--32573409
30
2.5
30
84
8
80
22
20
18
37
1.94
32575180--32575242
32
2.0
32
100
0
126
38
25
15
20
1.92
32581924--32581975
23
2.3
22
75
21
54
9
23
1
65
1.32
32582472--32582518
20
2.3
21
78
10
62
29
34
12
23
1.92
32583837--32583883
20
2.3
20
85
0
67
29
36
12
21
1.91
32593046--32593099
12
4.6
12
82
17
60
14
5
1
77
1.03
32593043--32593099
11
5.0
11
78
16
62
17
7
1
73
1.14
32593058--32593100
21
2.0
21
95
0
77
13
4
2
79
1.00
32597304--32597358
20
2.8
20
88
0
83
25
29
16
29
1.97
32599155--32599194
12
3.3
12
100
0
80
77
7
0
15
0.98
32599246--32599284
19
2.1
19
85
9
53
84
0
10
5
0.76
32600201--32600239
15
2.4
15
87
12
51
66
2
20
10
1.33
32601721--32601775
20
2.8
20
88
0
83
25
29
16
29
1.97
32604080--32604176
30
3.2
30
75
2
106
27
26
16
28
1.97
32610551--32610633
30
2.8
30
70
7
87
27
28
16
26
1.97
32612319--32612359
11
3.6
11
87
6
64
82
2
2
12
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32612319--32612364
22
2.0
23
95
4
85
78
4
4
13
1.05
32613266--32613336
37
1.9
37
86
11
101
77
2
18
1
0.97
32613265--32613336
16
4.5
16
77
10
67
77
2
18
1
0.96
32613276--32613325
6
8.2
6
85
14
59
78
2
20
0
0.86
32613276--32613336
21
2.8
21
80
5
77
78
1
18
1
0.91
32613386--32613416
12
2.6
12
100
0
62
45
12
16
25
1.83
32613409--32613475
30
2.2
32
76
12
79
61
1
20
16
1.42
32615543--32615639
30
3.2
30
75
2
106
27
26
16
28
1.97
32617479--32617525
20
2.3
20
81
0
58
29
34
12
23
1.92
32620060--32620165
48
2.2
47
85
9
135
59
1
24
14
1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311