Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  10  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3486716--3486764
24
2.0
24
96
0
89
28
18
16
36
1.92
3491111--3491139
13
2.2
13
100
0
58
48
13
31
6
1.69
3497404--3497444
21
2.0
21
90
0
64
19
29
21
29
1.98
3502023--3502136
56
2.0
57
96
1
212
33
13
12
41
1.81
3504812--3504843
9
3.4
9
95
4
55
12
53
0
34
1.39
3510049--3510276
46
5.0
46
84
3
271
41
14
23
21
1.89
3515556--3515648
39
2.5
37
80
7
98
27
29
22
20
1.98
3516004--3516050
3
16.0
3
77
4
51
57
6
0
36
1.24
3516004--3516050
12
4.0
12
86
5
60
57
6
0
36
1.24
3516713--3516738
11
2.4
11
100
0
52
0
42
7
50
1.31
3517096--3517138
21
2.0
21
81
0
50
58
6
0
34
1.25
3525180--3525226
20
2.3
21
85
7
62
65
2
2
29
1.15
3529137--3529271
39
3.4
38
74
10
103
28
27
20
23
1.99
3533486--3533518
17
1.9
17
88
11
50
21
6
0
72
1.05
3537911--3538003
39
2.5
37
80
7
98
27
29
22
20
1.98
3539118--3539168
14
3.6
14
76
7
50
17
11
0
70
1.16
3539318--3539354
14
2.4
17
86
13
53
51
0
0
48
1.00
3546096--3546154
25
2.4
25
85
0
73
25
27
20
27
1.99
3557990--3558063
38
1.9
38
97
0
139
52
12
9
25
1.68
3562291--3562319
8
3.6
8
100
0
58
37
0
0
62
0.96
3562342--3562387
5
9.4
5
95
4
85
41
0
0
58
0.98
3562868--3562928
21
2.8
23
80
14
85
13
22
27
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3562858--3562940
21
3.9
21
80
3
76
14
20
26
38
1.91
3573390--3573702
44
7.2
45
64
9
139
27
24
19
28
1.99
3573373--3573795
130
3.3
130
92
2
688
26
25
19
28
1.99
3573809--3573957
40
3.7
40
83
7
192
24
20
25
29
1.99
3573767--3573969
82
2.4
83
88
4
302
21
20
24
33
1.97
3574073--3574593
44
11.8
45
75
5
431
30
26
16
26
1.97
3574129--3574579
132
3.4
131
94
1
769
29
26
17
26
1.98
3574565--3575000
136
3.2
136
96
0
791
29
23
20
26
1.99
3574944--3575122
86
2.1
87
88
1
270
27
24
21
26
1.99
3585036--3585087
16
3.2
16
91
0
86
26
0
32
40
1.57
3585422--3585473
15
3.6
15
80
12
56
53
1
0
44
1.11
3585306--3585602
59
5.0
58
66
18
164
50
4
3
41
1.38
3585306--3585598
120
2.4
121
93
1
491
50
4
3
41
1.39
3588402--3588431
15
2.0
15
100
0
60
46
20
26
6
1.75
3590475--3590522
20
2.4
21
79
10
55
43
6
4
45
1.48
3608624--3608649
12
2.2
12
100
0
52
23
7
26
42
1.81
3611690--3611746
28
2.0
28
100
0
114
38
17
14
29
1.89
3621871--3621895
4
6.2
4
100
0
50
24
0
0
76
0.80
3626874--3626931
29
2.0
29
100
0
116
27
13
17
41
1.87
3628525--3628564
21
1.9
21
84
0
53
17
70
7
5
1.30
3631544--3631577
16
2.1
16
88
0
50
50
14
17
17
1.79
3634378--3634418
21
2.0
21
90
0
64
29
21
29
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3636305--3636338
16
2.1
16
88
0
50
50
14
17
17
1.79
3639229--3639274
11
4.3
11
80
5
58
19
41
6
32
1.77
3639812--3639882
18
3.9
18
79
0
88
29
18
14
38
1.90
3643937--3643968
11
2.9
11
95
0
55
25
37
6
31
1.81
3646072--3646192
39
3.1
39
96
0
224
38
21
24
14
1.91
3646072--3646174
21
5.2
21
71
13
92
39
20
24
15
1.91
3646092--3646192
18
5.3
18
70
13
85
37
21
25
14
1.92
3647614--3647646
16
2.1
16
100
0
66
21
24
0
54
1.45
3652367--3652392
2
13.0
2
100
0
52
50
0
50
0
1.00
3657877--3657918
18
2.2
20
83
8
52
52
7
9
30
1.61
3664083--3664228
37
4.0
37
92
1
233
25
21
16
36
1.94
3664192--3664414
52
4.6
46
85
7
257
29
22
13
34
1.92
3664281--3664314
7
4.7
7
88
3
50
26
26
2
44
1.69
3664191--3664414
98
2.3
98
80
9
253
29
23
13
34
1.93
3667283--3667326
18
2.5
17
85
3
61
63
0
0
36
0.95
3680599--3680683
42
2.0
42
95
0
152
32
7
20
40
1.79
3682898--3682968
31
2.2
33
82
9
85
56
11
2
29
1.49
3682916--3682968
16
3.3
15
75
19
54
56
11
1
30
1.45
3689621--3689648
14
2.0
14
100
0
56
28
0
21
50
1.49
3693168--3693192
12
2.1
12
100
0
50
24
36
24
16
1.94
3693353--3693399
9
5.2
9
97
0
76
42
25
10
21
1.85
3697240--3697291
19
2.7
19
82
14
54
55
3
1
38
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3697911--3697954
20
2.2
20
80
11
56
43
0
6
50
1.29
3698392--3698433
21
2.0
22
85
4
59
57
0
7
35
1.26
3725646--3725681
16
2.2
16
100
0
72
25
0
36
38
1.56
3725916--3725950
18
2.0
17
88
5
52
54
0
0
45
0.99
3732147--3732205
30
2.0
30
83
6
75
66
3
3
27
1.24
3732201--3732274
21
3.6
22
75
15
68
63
2
8
25
1.35
3766494--3766539
22
2.1
22
95
0
83
36
4
10
47
1.58
3770816--3770909
47
2.0
47
100
0
188
42
8
25
23
1.82
3778724--3778822
23
4.3
23
93
0
162
22
21
27
29
1.99
3784135--3784165
12
2.6
12
94
0
53
0
25
0
74
0.82
3784245--3784275
16
1.9
16
93
0
53
54
3
0
41
1.16
3786148--3786185
18
2.1
19
90
5
60
34
23
0
42
1.55
3787067--3787153
24
3.6
24
78
7
86
18
25
21
34
1.96
3787042--3787147
48
2.2
49
79
3
115
20
25
20
33
1.97
3789621--3789945
50
6.5
50
93
1
519
36
15
21
26
1.93
3789926--3789983
30
1.9
31
96
3
109
29
20
24
25
1.99
3789985--3790053
31
2.2
31
84
0
84
26
20
26
27
1.99
3794853--3795128
50
5.5
50
93
1
455
35
15
22
26
1.94
3794853--3795128
99
2.8
100
93
1
464
35
15
22
26
1.94
3794853--3795128
149
1.8
150
93
0
482
35
15
22
26
1.94
3795108--3795165
31
1.9
31
96
3
109
29
18
25
25
1.98
3795121--3795210
45
2.0
45
86
4
128
25
22
24
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3795167--3795234
30
2.2
31
84
2
84
25
20
26
27
1.99
3802259--3802513
55
4.8
53
80
7
227
21
24
16
36
1.94
3802306--3802506
108
1.8
110
89
4
318
23
24
16
34
1.95
3805392--3805460
29
2.3
31
82
7
88
47
4
17
30
1.67
3805392--3805459
30
2.3
30
84
5
84
48
4
17
29
1.67
3807611--3807838
46
5.0
46
91
1
314
41
13
22
22
1.89
3808124--3808156
17
2.0
17
94
5
59
48
0
15
36
1.45
3809231--3809278
25
1.9
25
95
0
87
22
22
14
39
1.91
3810597--3810663
29
2.2
31
78
7
75
46
5
20
26
1.74
3815639--3815722
28
3.0
28
91
1
132
19
3
30
46
1.66
3815643--3815736
28
3.6
24
78
18
91
15
4
34
45
1.66
3815927--3815971
22
2.0
23
95
4
83
17
17
22
42
1.89
3820434--3820706
46
5.9
46
90
0
386
41
13
23
21
1.88
3820434--3820706
92
3.0
92
91
0
429
41
13
23
21
1.88
3825014--3825092
4
19.2
4
69
10
52
5
25
5
64
1.35
3825117--3825147
14
2.2
14
94
0
53
22
16
0
61
1.34
3826364--3826839
162
2.9
162
96
0
871
39
2
8
50
1.45
3826547--3826799
87
3.1
85
61
23
194
37
2
7
51
1.44
3840351--3840388
17
2.1
19
85
9
53
52
7
0
39
1.31
3840411--3840489
40
2.0
41
85
7
108
60
3
3
31
1.32
3844418--3844452
3
11.7
3
100
0
70
34
0
0
65
0.93
3847976--3848236
129
2.0
129
100
0
522
40
16
16
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3850741--3850770
15
2.0
15
93
0
51
76
0
3
20
0.92
3851045--3851176
64
2.0
66
89
5
207
41
16
14
27
1.87
3852725--3852860
46
3.0
46
83
2
177
33
13
10
42
1.78
3856409--3856453
16
2.8
16
82
0
63
60
13
0
26
1.34
3860565--3860602
20
1.9
20
88
0
58
42
7
5
44
1.56
3867350--3867413
32
2.0
32
100
0
128
40
25
3
31
1.71
3867531--3867582
25
2.1
25
85
0
68
59
5
3
30
1.39
3868750--3868821
29
2.5
29
97
0
135
25
11
12
51
1.72
3869259--3869327
29
2.3
30
82
12
88
50
14
13
21
1.76
3879675--3879720
16
3.1
14
79
14
56
71
2
0
26
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325