genome.fa.s5.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  112  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35551430--35551549	59	2.0	59	98	0	231	28	20	15	36	1.92
35554251--35554378	64	2.0	64	90	0	202	32	17	14	36	1.89
35554401--35555363	132	7.3	133	88	1	1373	28	20	23	27	1.99
35554657--35554878	45	5.0	45	68	5	128	28	18	25	26	1.98
35554401--35555363	265	3.6	265	91	1	1425	28	20	23	27	1.99
35554405--35555366	397	2.4	396	88	1	1417	28	20	23	27	1.99
35556807--35556850	23	1.9	23	85	0	61	29	2	2	65	1.16
35557271--35557313	20	2.1	21	86	4	61	25	4	2	67	1.22
35557324--35557366	13	3.2	13	84	12	52	27	4	2	65	1.25
35564216--35564265	25	2.0	25	96	0	91	28	10	20	42	1.84
35573252--35573609	90	4.1	90	76	10	303	31	5	24	39	1.77
35573561--35573748	92	2.0	92	98	0	367	28	7	27	36	1.85
35578314--35578399	30	2.8	31	94	1	147	25	2	12	59	1.46
35583742--35583849	26	4.2	26	90	0	171	33	6	23	37	1.80
35595605--35595638	6	5.7	6	96	0	59	47	32	2	17	1.63
35597771--35597823	29	1.9	27	82	17	65	43	7	11	37	1.69
35598018--35598091	38	2.0	37	94	5	132	40	10	16	32	1.83
35598197--35598378	97	1.9	100	84	5	255	30	21	14	32	1.94
35600538--35600736	62	3.2	61	72	7	186	19	21	14	44	1.86
35600537--35600733	41	4.7	42	80	5	204	19	21	14	44	1.86
35600538--35600750	21	10.3	21	73	5	139	18	22	15	44	1.87
35602263--35602311	19	2.7	18	84	9	55	53	4	14	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35607739--35607783	19	2.2	21	88	11	67	28	8	24	37	1.86
35607739--35607777	19	2.1	19	100	0	78	28	10	25	35	1.89
35609395--35609559	90	1.8	90	83	5	217	33	3	19	43	1.69
35616310--35616335	3	8.7	3	100	0	52	34	0	0	65	0.93
35617404--35617499	34	2.8	34	80	0	102	44	16	8	30	1.77
35618144--35618184	18	2.3	19	83	12	59	21	36	19	21	1.95
35620788--35620998	94	2.2	93	82	5	246	31	19	18	29	1.96
35620841--35621288	44	10.0	44	71	11	264	33	17	19	29	1.95
35620933--35621059	41	3.0	41	81	7	148	33	19	19	26	1.96
35620841--35621232	179	2.2	180	80	5	416	33	17	19	29	1.95
35624818--35624868	25	2.0	25	85	7	68	25	3	3	66	1.26
35624881--35624934	24	2.2	24	83	0	63	33	5	1	59	1.31
35624890--35625279	26	15.1	25	71	14	208	30	5	3	60	1.37
35624897--35625127	53	4.4	54	75	16	164	29	4	3	62	1.33
35624890--35625279	52	7.6	52	72	10	284	30	5	3	60	1.37
35625090--35625137	14	3.5	15	78	16	59	37	0	0	62	0.95
35634218--35634290	36	2.0	36	97	0	137	39	13	15	31	1.86
35636196--35636380	40	4.7	40	82	7	209	24	22	27	24	2.00
35636196--35636380	79	2.3	81	83	7	227	24	22	27	24	2.00
35636249--35636413	79	2.1	79	84	6	210	26	21	27	25	1.99
35637801--35637859	5	11.0	5	89	7	73	18	0	1	79	0.81
35637799--35637856	23	2.5	24	86	13	79	18	0	1	79	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35642922--35642981	5	12.0	5	76	13	52	23	0	1	75	0.90
35642920--35642976	30	1.9	30	85	7	80	24	0	1	73	0.92
35648469--35648493	3	8.3	3	100	0	50	36	0	0	64	0.94
35650359--35650398	19	2.1	19	86	9	55	57	7	0	35	1.27
35656367--35656415	23	2.1	23	100	0	98	20	6	22	51	1.69
35656476--35656513	18	2.0	18	90	10	58	34	0	0	65	0.93
35659521--35659588	32	2.1	32	100	0	136	30	20	16	32	1.94
35659877--35659919	22	1.9	23	85	4	61	46	13	2	37	1.57
35659903--35659955	19	3.0	17	81	10	70	35	16	9	37	1.82
35664956--35665000	23	2.0	23	91	4	74	46	17	4	31	1.68
35664982--35665034	19	3.0	17	81	10	70	37	16	7	37	1.78
35664953--35665010	22	2.6	22	86	7	82	43	18	3	34	1.68
35664966--35665023	19	2.8	20	84	10	64	39	17	6	36	1.76
35668366--35668531	53	3.1	53	88	6	221	25	15	28	30	1.96
35677062--35677109	10	4.9	9	85	10	51	22	6	2	68	1.23
35678026--35678061	9	3.8	10	92	7	58	27	0	0	72	0.85
35681007--35681261	3	85.7	3	75	6	198	30	6	1	61	1.29
35681343--35681403	12	5.3	11	75	14	52	18	8	1	72	1.18
35681417--35681459	3	14.0	3	95	4	77	34	0	0	65	0.93
35684491--35684572	41	2.0	41	95	0	146	34	17	29	19	1.94
35692613--35692657	24	1.9	24	95	4	83	62	0	0	37	0.96
35704819--35704853	18	1.9	18	94	0	61	31	34	5	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35714511--35714705	98	2.0	98	87	4	286	51	12	11	24	1.73
35721949--35721986	19	2.0	20	85	15	53	68	2	7	21	1.28
35722917--35722965	24	2.0	24	92	7	82	20	4	46	28	1.68
35722959--35722989	12	2.6	12	100	0	62	9	0	41	48	1.36
35723473--35724362	44	20.2	44	63	11	146	25	23	21	29	1.99
35723291--35723593	133	2.3	133	87	1	419	28	22	20	29	1.98
35723410--35723743	177	1.9	176	89	1	526	26	23	21	28	1.99
35723447--35723731	89	3.2	88	69	8	254	25	23	20	29	1.99
35723473--35723743	88	3.1	87	69	8	251	26	22	21	28	1.99
35723652--35724502	131	6.5	131	87	1	1141	25	24	20	29	1.99
35723657--35724500	394	2.1	395	88	0	1251	25	24	20	29	1.99
35723652--35724502	263	3.2	262	88	1	1220	25	24	20	29	1.99
35725070--35725129	25	2.4	25	88	5	86	30	18	11	40	1.86
35725594--35725639	21	2.2	21	85	11	60	0	10	4	84	0.75
35725600--35725640	22	1.9	21	90	5	64	0	9	7	82	0.83
35726136--35726173	7	5.7	7	84	12	53	10	10	0	78	0.95
35726131--35726173	12	3.4	13	81	15	54	9	9	0	81	0.88
35730091--35730260	50	3.5	50	81	11	201	34	15	22	26	1.95
35730236--35730353	31	3.8	31	86	4	175	27	19	27	26	1.99
35730371--35730584	47	4.7	46	82	6	193	28	14	26	29	1.96
35730369--35730628	42	5.7	48	83	8	212	29	14	26	30	1.95
35732246--35732283	12	3.2	12	84	0	58	7	18	18	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35734690--35734982	3	97.7	3	66	20	89	62	2	8	26	1.37
35734913--35734978	23	2.9	23	74	12	66	63	0	7	28	1.21
35734881--35734985	20	5.1	20	70	15	70	67	1	4	25	1.20
35735018--35735070	18	2.7	21	83	11	60	60	0	11	28	1.31
35735240--35735282	5	8.0	5	80	14	50	76	0	4	18	0.95
35735352--35735403	25	2.1	24	82	3	59	13	23	9	53	1.68
35739686--35739726	20	2.0	20	85	0	55	46	0	2	51	1.14
35740714--35740896	94	1.9	96	87	6	275	45	11	15	26	1.80
35743671--35743705	6	5.8	6	86	0	52	14	45	0	40	1.45
35743658--35743705	24	2.0	24	87	0	69	12	41	4	41	1.62
35745965--35746012	20	2.5	19	77	12	53	54	4	2	39	1.32
35746116--35746155	21	2.0	21	85	14	57	60	2	0	37	1.11
35749227--35749323	30	3.2	30	71	8	90	27	15	28	27	1.96
35751179--35751207	9	3.2	9	100	0	58	10	44	0	44	1.38
35751426--35751509	30	2.8	29	75	12	89	13	21	1	64	1.35
35751485--35751516	12	2.7	12	95	0	55	9	15	3	71	1.24
35751578--35751634	5	11.0	5	78	17	55	1	17	1	78	0.91
35751576--35751645	16	4.4	16	81	13	83	1	18	2	77	0.97
35754254--35754350	30	3.2	30	71	8	90	27	15	28	27	1.96
35770463--35770584	28	4.5	28	74	9	108	22	24	15	37	1.93
35773198--35773250	23	2.3	23	78	12	56	58	1	3	35	1.27
35773766--35773805	20	2.0	20	85	9	55	55	25	17	2	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35785207--35785248	3	13.7	3	80	14	50	35	2	0	61	1.09
35785264--35785288	6	4.2	6	100	0	50	32	0	16	52	1.44
35785376--35785465	26	3.4	27	75	18	84	32	0	5	62	1.18
35785644--35785675	3	10.3	3	93	6	55	37	0	0	62	0.95
35785677--35785720	22	2.0	21	86	13	61	34	4	9	52	1.54
35785691--35785828	71	1.9	73	86	4	199	32	5	5	56	1.45
35794704--35794882	77	2.4	77	81	3	220	27	18	15	38	1.91
35794786--35794972	90	2.1	89	82	6	225	26	18	15	39	1.90
35794892--35795189	76	3.9	76	90	3	445	28	17	21	32	1.96
35794900--35795189	155	1.9	155	90	1	465	28	17	21	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325