genome.fa.s5.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  139  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43513888--43514076	50	3.8	49	82	1	216	31	24	17	25	1.97
43513889--43514076	99	1.9	99	84	2	250	31	25	18	25	1.97
43513889--43514084	101	2.0	99	83	2	248	30	25	18	25	1.98
43516912--43516947	16	2.2	16	100	0	72	27	0	33	38	1.57
43521864--43522663	397	2.0	398	90	0	1262	28	23	16	32	1.95
43529384--43529566	47	3.9	47	81	2	179	23	15	28	32	1.95
43532503--43532549	20	2.3	20	89	7	69	38	8	19	34	1.82
43532595--43532703	25	4.4	24	80	6	112	26	22	21	29	1.99
43532596--43532715	49	2.4	50	81	9	138	25	23	21	29	1.99
43556776--43556886	27	4.1	27	82	5	118	36	20	24	18	1.94
43557013--43557064	27	1.9	27	88	7	79	30	15	19	34	1.93
43564631--43564741	27	4.1	27	86	5	127	38	21	23	16	1.92
43564631--43564741	54	2.1	53	86	1	150	38	21	23	16	1.92
43573005--43573416	47	8.7	47	92	2	657	32	8	30	28	1.87
43573005--43573416	187	2.2	189	91	2	668	32	8	30	28	1.87
43573538--43573687	37	4.1	37	94	0	255	20	18	33	27	1.96
43581220--43581378	27	5.9	27	79	12	150	34	22	23	19	1.96
43581238--43581378	54	2.6	53	88	4	201	34	24	22	18	1.96
43582999--43583106	26	4.2	26	91	0	180	36	24	8	31	1.85
43593102--43593148	25	1.9	25	86	4	69	21	0	2	76	0.89
43596845--43596969	42	3.0	43	81	10	150	32	24	19	24	1.98
43600625--43600704	37	2.2	37	93	2	135	33	26	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43604485--43604636	43	3.5	44	77	15	156	32	25	17	25	1.97
43604461--43604630	43	4.0	42	78	8	155	32	24	17	25	1.97
43606178--43606220	22	2.0	22	90	0	68	41	25	23	9	1.84
43606455--43606512	27	2.1	27	87	0	80	25	18	17	37	1.93
43608083--43608129	23	2.0	23	100	0	94	34	29	8	27	1.87
43621048--43621179	49	2.7	49	82	4	153	26	28	20	24	1.99
43621048--43621360	46	6.7	45	75	10	179	25	29	17	27	1.98
43621935--43622010	38	2.0	38	92	0	125	40	18	3	36	1.69
43625811--43625900	39	2.3	39	92	1	144	28	24	11	35	1.90
43636007--43636118	40	2.8	40	93	0	188	25	25	23	25	2.00
43644012--43644236	40	5.6	40	85	6	294	26	28	21	23	1.99
43644012--43644236	83	2.8	82	87	6	318	26	28	21	23	1.99
43652074--43652271	27	7.3	27	86	2	236	29	24	6	39	1.80
43652074--43652267	81	2.4	81	89	0	280	29	24	6	39	1.80
43652303--43652440	27	5.1	28	78	4	131	42	21	5	31	1.76
43652270--43652425	81	1.9	81	83	7	201	41	19	9	30	1.83
43652323--43652483	54	2.9	53	77	4	160	41	19	6	32	1.78
43652303--43652509	110	1.9	108	81	4	245	40	20	7	30	1.81
43653512--43653603	42	2.2	42	94	0	157	31	17	20	30	1.96
43653627--43653710	31	2.7	31	94	1	143	26	17	27	28	1.98
43656436--43656540	53	2.0	53	84	0	138	40	18	22	19	1.92
43658064--43658169	28	3.8	29	83	5	119	29	17	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43662373--43662417	16	2.8	16	82	0	54	60	17	15	6	1.56
43662631--43662717	28	3.1	28	83	6	104	28	13	28	28	1.95
43664956--43664985	15	2.0	15	100	0	60	33	0	6	60	1.23
43669317--43669353	16	2.3	16	90	0	56	62	8	8	21	1.49
43679641--43679844	53	3.8	53	72	5	140	36	18	24	20	1.95
43691025--43691126	40	2.5	40	77	1	114	20	22	29	27	1.99
43699206--43699355	41	3.7	41	83	1	212	20	23	28	28	1.99
43712019--43712054	18	2.0	18	88	0	54	8	5	19	66	1.38
43715440--43715477	17	2.2	17	95	0	67	26	13	31	28	1.93
43720864--43720951	41	2.1	44	89	6	137	29	10	3	56	1.49
43722890--43722969	38	2.2	36	83	14	112	17	13	11	57	1.65
43722903--43722983	38	2.2	38	97	2	155	19	14	12	53	1.73
43726409--43726471	18	3.5	17	73	18	56	68	3	15	12	1.33
43735828--43735928	29	3.5	29	86	1	141	26	13	28	30	1.94
43737179--43737207	12	2.5	12	94	5	51	41	17	0	41	1.49
43743606--43743820	64	3.3	66	75	13	183	23	30	16	29	1.96
43752125--43752209	34	2.5	34	82	0	107	29	23	23	23	1.99
43757890--43757931	23	1.9	23	85	9	61	26	19	11	42	1.85
43775859--43775935	31	2.5	31	91	6	129	25	23	18	32	1.97
43776141--43776302	26	6.3	26	91	2	251	27	23	21	27	1.99
43777105--43777191	27	3.2	27	90	3	122	19	26	19	34	1.96
43777230--43777580	27	13.0	27	76	6	237	31	8	19	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43777335--43777580	54	4.6	54	81	5	275	29	7	21	41	1.80
43777333--43777566	81	2.9	80	88	3	328	29	7	20	42	1.79
43777557--43777688	27	4.9	27	84	0	156	43	6	18	31	1.77
43779961--43780039	31	2.5	31	91	0	122	25	25	20	29	1.99
43780250--43780380	26	5.2	25	81	8	135	31	22	18	28	1.97
43780251--43780380	52	2.6	50	82	9	151	31	21	18	28	1.97
43781161--43781239	27	2.9	27	81	9	88	20	22	21	35	1.96
43781257--43781615	27	13.3	27	77	6	280	31	9	20	39	1.83
43781369--43781602	81	2.9	79	87	4	335	29	7	20	41	1.80
43781342--43781753	27	15.3	27	81	4	260	33	7	20	39	1.80
43793910--43794175	27	9.9	27	85	4	331	39	18	9	33	1.82
43793913--43794246	81	4.1	80	82	3	339	39	19	8	32	1.82
43793910--43794246	27	12.5	27	79	7	274	39	19	8	32	1.82
43793913--43794246	54	6.2	54	81	4	307	39	19	8	32	1.82
43794126--43794283	81	2.0	81	82	5	194	38	22	7	31	1.82
43794273--43794347	27	2.8	27	93	0	123	36	18	22	22	1.95
43804767--43804938	79	2.2	78	83	7	213	25	22	28	24	1.99
43804714--43804936	40	5.6	39	79	7	207	25	21	27	24	1.99
43804794--43804971	79	2.2	80	82	3	200	25	22	28	23	1.99
43806427--43806456	11	2.7	11	100	0	60	26	10	16	46	1.78
43809125--43809353	41	5.6	41	77	6	205	34	13	29	21	1.92
43809211--43809317	40	2.6	40	82	2	115	29	14	33	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43810878--43811011	41	3.2	41	88	3	178	29	25	17	27	1.98
43811810--43811884	34	2.2	35	78	7	82	33	24	18	24	1.97
43812348--43812406	26	2.3	26	90	0	91	28	37	16	16	1.92
43816010--43816034	12	2.1	12	100	0	50	32	0	0	68	0.90
43816834--43817116	115	2.5	108	77	10	257	38	21	13	26	1.91
43820280--43820361	41	2.0	41	100	0	164	43	12	7	36	1.70
43820336--43820430	47	2.0	47	97	0	181	37	22	4	35	1.73
43820929--43821089	7	22.7	7	75	9	76	41	36	0	21	1.54
43820959--43821152	14	13.7	14	72	12	83	45	32	1	20	1.58
43821470--43821567	49	2.0	49	84	4	126	28	22	20	28	1.98
43821561--43821678	40	3.0	40	75	8	107	32	22	14	30	1.94
43824121--43824317	98	2.0	97	90	1	304	31	23	9	35	1.86
43824366--43824395	3	10.0	3	100	0	60	33	0	0	66	0.92
43824860--43824917	13	4.4	13	72	10	55	39	29	8	22	1.84
43827811--43827995	79	2.3	82	83	7	229	24	27	22	24	2.00
43827792--43827995	40	5.1	40	81	8	229	24	27	22	25	2.00
43835741--43835923	39	4.6	40	77	11	189	25	27	22	24	2.00
43840618--43840651	17	2.0	17	94	0	59	50	0	20	29	1.49
43840620--43840660	17	2.4	17	87	0	55	56	0	12	31	1.36
43841501--43841650	43	3.5	43	74	5	126	32	15	20	32	1.93
43856210--43856332	47	2.6	46	81	11	135	21	29	17	30	1.97
43858011--43858044	17	2.0	17	94	0	59	50	0	17	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43858013--43858053	17	2.4	17	83	0	55	56	0	9	34	1.32
43858902--43859050	43	3.5	43	77	5	133	26	14	24	34	1.94
43870727--43870798	27	2.6	29	80	12	71	66	0	9	23	1.21
43872267--43872442	46	3.8	46	80	12	207	22	20	28	28	1.98
43872266--43872434	93	1.8	93	93	0	293	22	20	28	27	1.99
43891706--43891759	27	2.0	27	92	0	90	48	18	5	27	1.70
43893654--43893732	37	2.1	37	88	4	115	25	30	18	25	1.98
43893851--43894278	47	9.1	47	94	1	696	28	29	9	32	1.88
43893851--43894278	143	3.0	143	92	2	704	28	29	9	32	1.88
43897857--43898014	80	2.0	80	83	2	201	25	25	21	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325