genome.fa.s5.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  151  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47909063--47909092	16	1.9	16	93	6	53	30	0	20	50	1.49
47910825--47910887	26	2.3	27	83	8	83	36	25	11	26	1.90
47910995--47911106	27	4.1	27	83	3	127	18	20	22	38	1.93
47910996--47911102	54	2.0	54	85	3	144	19	19	21	39	1.93
47916030--47916089	27	2.3	26	82	2	66	36	20	21	21	1.95
47920898--47921070	56	3.1	55	93	3	283	29	8	34	27	1.87
47922501--47922576	37	2.1	37	100	0	152	28	21	14	35	1.92
47923784--47923967	49	3.7	49	82	2	233	30	25	17	26	1.98
47923783--47923965	100	1.8	100	90	0	294	30	24	18	26	1.98
47924214--47924267	27	2.0	27	85	0	72	38	14	5	40	1.70
47935615--47935897	50	5.6	50	79	5	275	24	15	27	32	1.95
47935668--47935897	101	2.3	100	83	0	280	23	16	28	31	1.96
47935617--47935898	151	1.9	153	87	1	424	24	15	27	32	1.95
47936022--47936058	18	2.1	18	100	0	74	32	5	40	21	1.76
47946853--47947234	47	7.7	47	73	16	290	32	8	30	29	1.87
47946853--47947234	94	3.9	94	74	15	356	32	8	30	29	1.87
47946967--47947000	17	2.0	17	100	0	68	35	11	23	29	1.90
47946920--47947049	64	2.0	65	96	3	244	33	9	27	30	1.88
47946984--47947234	47	5.3	47	94	0	412	32	8	30	28	1.87
47946853--47947143	160	1.8	157	96	2	537	32	8	29	29	1.87
47946872--47947096	113	2.0	111	98	1	432	32	9	28	29	1.88
47947353--47947430	37	2.1	36	86	6	104	25	19	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47949831--47949891	32	1.9	32	86	6	88	42	24	16	16	1.88
47958129--47958326	64	3.0	65	85	7	249	23	28	14	33	1.94
47958186--47958326	64	2.1	67	94	3	252	24	29	14	31	1.94
47963162--47963384	79	2.8	78	83	8	272	25	27	22	24	2.00
47963162--47963384	40	5.7	40	86	7	280	25	27	22	24	2.00
47971133--47971352	40	5.7	39	84	8	247	25	28	21	25	1.99
47971133--47971352	76	2.8	76	83	10	257	25	28	21	25	1.99
47976888--47977035	68	2.2	67	90	2	215	25	30	13	30	1.94
47976905--47977047	68	2.1	68	97	0	268	24	30	13	31	1.94
47976905--47977081	68	2.6	67	88	7	234	24	28	14	32	1.94
47983262--47983403	27	5.3	26	72	12	92	30	9	23	36	1.86
47987281--47987337	30	1.9	30	89	7	89	40	5	24	29	1.77
47988105--47988386	101	2.8	100	84	4	336	24	16	26	32	1.96
47988109--47988386	151	1.8	153	91	3	463	24	15	26	33	1.95
47988105--47988386	50	5.6	50	81	3	323	24	16	26	32	1.96
47990260--47990315	20	2.9	20	89	5	80	23	32	33	10	1.89
47991154--47991229	38	2.0	38	97	0	143	31	11	23	32	1.91
47992415--47992559	40	3.6	40	85	4	184	25	24	26	24	2.00
47997901--47998154	68	3.9	65	78	9	239	24	29	16	29	1.97
48001110--48001277	91	1.8	91	93	2	293	27	29	20	22	1.98
48001105--48001274	45	3.7	47	80	9	201	28	28	20	22	1.99
48003640--48003689	15	3.4	15	86	2	66	60	12	18	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48003651--48003698	15	3.2	15	79	5	53	56	14	16	12	1.68
48006626--48006798	46	3.7	46	72	7	152	31	26	20	21	1.98
48016031--48016258	40	5.7	40	90	3	343	25	26	23	25	2.00
48021322--48021397	28	2.7	28	95	0	134	23	27	28	19	1.98
48021546--48021627	26	3.2	26	75	6	87	40	24	15	19	1.91
48025411--48025480	26	2.7	26	84	6	97	38	25	18	17	1.92
48025417--48025493	26	3.0	26	82	0	91	37	25	20	15	1.92
48025920--48025964	19	2.5	18	82	10	65	24	42	24	8	1.83
48027986--48028018	16	2.1	16	94	0	57	36	12	15	36	1.84
48033054--48033243	42	4.4	44	81	9	223	33	24	16	26	1.96
48033049--48033243	86	2.3	86	91	2	313	32	23	16	27	1.96
48038171--48038221	26	2.0	26	96	0	93	11	23	35	29	1.90
48038273--48038324	26	2.0	26	96	0	95	13	23	34	28	1.92
48038093--48038454	102	3.6	102	92	3	574	19	19	30	29	1.97
48045740--48045789	25	2.0	25	96	0	91	14	24	32	30	1.94
48045664--48046018	101	3.6	99	92	4	531	20	20	28	30	1.98
48048936--48049035	41	2.3	43	83	10	125	30	17	25	28	1.97
48048936--48049078	42	3.5	41	77	12	107	28	19	25	25	1.99
48071047--48071146	39	2.6	40	90	6	154	21	23	30	26	1.99
48078617--48078834	40	5.5	40	81	4	221	23	23	27	25	2.00
48089079--48089164	45	1.9	44	83	2	109	24	15	25	34	1.94
48102053--48102100	25	1.9	25	82	0	60	33	18	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48102148--48102203	11	5.5	11	75	16	66	35	10	19	33	1.87
48102147--48102223	20	3.8	20	96	0	136	33	11	20	33	1.89
48102254--48102338	25	3.3	26	74	12	88	24	24	24	25	2.00
48108261--48108409	75	2.0	74	84	3	192	32	5	5	57	1.44
48113720--48113859	27	5.1	27	85	4	147	27	22	8	40	1.83
48113727--48113859	54	2.4	54	86	3	169	28	24	7	39	1.82
48113851--48114041	27	7.1	26	79	10	138	38	22	10	27	1.88
48113858--48114041	54	3.4	52	81	4	188	39	21	10	28	1.87
48113858--48114041	81	2.3	81	82	7	214	39	21	10	28	1.87
48113916--48114104	27	6.9	27	77	9	96	40	20	9	30	1.84
48114158--48114218	27	2.3	27	80	5	70	37	16	24	21	1.93
48115032--48115101	25	2.8	25	84	4	88	22	27	25	24	2.00
48116204--48116331	68	1.9	68	96	3	240	29	25	14	29	1.95
48116279--48116399	42	2.9	41	81	6	152	28	25	16	29	1.97
48122671--48123002	27	12.3	27	78	9	209	32	10	19	37	1.86
48122697--48122963	54	5.0	54	81	2	261	33	8	18	38	1.82
48122724--48122934	80	2.6	80	77	6	212	34	7	18	39	1.79
48122724--48122948	107	2.1	108	79	2	247	32	8	19	39	1.82
48122984--48123027	21	2.1	21	83	8	54	29	13	27	29	1.94
48129562--48129703	27	5.3	27	88	3	137	31	14	15	38	1.88
48129562--48129868	54	5.7	54	77	7	198	31	12	17	38	1.87
48129602--48129905	27	11.4	27	82	5	323	31	11	18	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48129626--48129905	107	2.6	108	81	2	341	31	11	19	37	1.87
48130249--48130340	28	3.3	28	81	0	112	26	33	16	23	1.95
48134030--48134563	47	11.1	47	86	5	708	31	12	29	26	1.93
48134030--48134563	145	3.7	145	87	5	769	31	12	29	26	1.93
48134373--48134447	23	3.2	23	62	23	57	29	10	32	28	1.90
48134539--48134627	46	1.9	46	81	0	106	33	10	31	24	1.89
48134774--48135029	37	6.9	37	94	0	440	25	18	30	25	1.98
48141495--48141662	39	4.3	39	93	0	282	20	26	20	31	1.98
48143446--48143619	40	4.4	40	91	2	262	24	22	28	24	2.00
48153610--48153872	132	2.0	132	91	1	429	33	23	17	25	1.96
48169689--48169719	15	2.1	15	93	0	53	35	25	6	32	1.82
48173600--48173930	47	7.1	47	87	6	402	31	11	29	26	1.92
48173673--48173930	89	2.8	91	86	5	337	31	13	30	25	1.93
48173673--48173923	136	1.8	136	93	0	430	31	13	30	25	1.93
48173904--48174040	46	3.0	46	87	0	193	34	9	30	25	1.88
48179454--48179492	21	1.9	20	84	5	51	71	7	10	10	1.30
48185740--48185814	28	2.7	28	85	0	105	28	33	13	25	1.93
48191058--48191164	29	3.7	29	76	6	110	24	31	14	28	1.95
48191060--48191172	58	2.0	57	83	1	145	24	30	14	30	1.94
48191245--48191281	19	2.0	18	89	5	56	18	40	16	24	1.90
48191254--48191290	19	1.9	19	88	0	56	16	37	18	27	1.92
48199822--48199854	16	2.1	16	100	0	66	51	6	36	6	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48218057--48218170	31	3.7	31	89	2	169	26	25	18	29	1.98
48218391--48218460	25	2.8	26	82	4	81	25	21	25	27	1.99
48220929--48221096	47	3.6	47	95	0	300	32	8	29	30	1.87
48220929--48221358	94	4.7	94	87	6	623	32	8	29	28	1.87
48221059--48221130	35	2.1	35	100	0	144	34	5	27	31	1.80
48221094--48221358	47	5.6	47	93	0	404	33	8	30	27	1.87
48221012--48221272	82	3.0	82	84	12	378	33	7	28	30	1.85
48220929--48221272	176	2.0	176	97	0	643	32	8	28	30	1.86
48221477--48221555	37	2.1	37	79	4	88	26	16	29	27	1.97
48223692--48223756	27	2.4	27	82	5	78	21	24	18	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325